[POCKETOME]
 

Search Results

17 entries [expand]
Show only: ⁠Human; ⁠Other mammals; ⁠Gram-positive bacteria; ⁠Gram-negative bacteria; ⁠Archaea; ⁠Virus; ⁠Other.

SYI_THET8_384_821 [text] Isoleucine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily]

volume: 392. Å3; shape: 0.63; buriedness: 0.73

negative: 0.14; positive: 0.16; polar: 0.06; backbone: 0.47; hydrophobic: 0.16

PDB: 1ile, 1jzq, 1jzs

HET: ila, mrc

SYL_ECOLI_226_413 [text] Leucine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family]

volume: 543. Å3; shape: 0.53; buriedness: 0.76

negative: 0.13; positive: 0.14; polar: 0.19; backbone: 0.36; hydrophobic: 0.17

PDB: 2ajg, 2ajh, 2aji, 3zgz, 3zjt, 3zju, 3zjv, 4aq7, 4arc, 4ari, 4as1, 4cqn

HET: 365, 574, djf, ila, n79

SYL_ECOLI_413_860 [text] Leucine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family]

volume: 274. Å3; shape: 0.48; buriedness: 0.92

negative: 0.09; positive: 0.18; polar: 0.21; backbone: 0.39; hydrophobic: 0.13

PDB: 3zgz, 3zjt, 3zju, 3zjv, 4aq7, 4arc, 4ari, 4as1, 4cqn

HET: 84t, ila, lms

SYM_BRUSU_1_515 [text] Methionine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily]

volume: 279. Å3; shape: 0.58; buriedness: 0.85

negative: 0.09; positive: 0.09; polar: 0.12; backbone: 0.31; hydrophobic: 0.38

PDB: 4dlp, 4py2, 5k0s, 5k0t

HET: 0ou, 415, 43e, mse

SYMC_HUMAN_1_220 [text] Methionine--tRNA ligase, cytoplasmic [Class-I aminoacyl-tRNA synthetase family]

volume: 148. Å3; shape: 0.86; buriedness: 0.55

negative: 0.; positive: 0.27; polar: 0.33; backbone: 0.27; hydrophobic: 0.13

Multimer with: Eukaryotic translation elongation factor 1 epsilon-1 (MCA3_HUMAN)
Domains/regions (MCA3): [D] GST C-terminal

PDB: 4bl7, 4bvx, 4bvy

HET: i3c

SYM_THET8_1_501 [text] Methionine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family. MetG type 2A subfamily]

volume: 107. Å3; shape: 0.51; buriedness: 0.82

negative: 0.; positive: 0.09; polar: 0.19; backbone: 0.17; hydrophobic: 0.55

PDB: 1a8h, 1woy, 2d54, 2d5b, 3vu8

HET: mds

SYQ_ECOLI_2_552 [text] Glutamine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family]

volume: 555. Å3; shape: 0.77; buriedness: 0.87

negative: 0.06; positive: 0.23; polar: 0.1; backbone: 0.38; hydrophobic: 0.24

PDB: 1euq, 1euy, 1exd, 1gsg, 1gtr, 1gts, 1nyl, 1o0b, 1o0c, 1qrs, 1qrt, 1qru, 1qtq, 1zjw, 2rd2, 2re8, 4jxx, 4jxz, 4jyz

HET: amp, atp, gsu, qsi, so4

SYRC_HUMAN_71_660 [text] Arginine--tRNA ligase, cytoplasmic [Class-I aminoacyl-tRNA synthetase family]

volume: 115. Å3; shape: 0.43; buriedness: 0.91

negative: 0.18; positive: 0.16; polar: 0.36; backbone: 0.14; hydrophobic: 0.16

PDB: 4q2t, 4q2x, 4q2y, 4zaj

HET: ggb

SYV_THETH_192_338 [text] Valine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily]

volume: 311. Å3; shape: 0.76; buriedness: 0.75

negative: 0.18; positive: 0.06; polar: 0.19; backbone: 0.32; hydrophobic: 0.24

Domains/regions: [R] Interaction with the Thr-AMP intermediate

PDB: 1gax, 1ivs, 1wk9, 1wka

HET: tsb

SYWC_HUMAN_89_471 [text] Tryptophan--tRNA ligase, cytoplasmic [Class-I aminoacyl-tRNA synthetase family]

volume: 651. Å3; shape: 0.63; buriedness: 0.88

negative: 0.05; positive: 0.11; polar: 0.19; backbone: 0.35; hydrophobic: 0.3

PDB: 1o5t, 1r6t, 1r6u, 1ulh, 2ake, 2azx, 2dr2, 2quh, 2qui, 2quj, 2quk

HET: atp, ltn, tym

SYWC_YEAST_1_432 [text] Tryptophan--tRNA ligase, cytoplasmic [Class-I aminoacyl-tRNA synthetase family]

volume: 383. Å3; shape: 0.55; buriedness: 0.88

negative: 0.1; positive: 0.06; polar: 0.22; backbone: 0.36; hydrophobic: 0.25

PDB: 2ip1, 3kt0, 3kt3, 3kt6, 3kt8

HET: emn, ltn, pg4, tym

SYW_GEOSE_1_327 [text] Tryptophan--tRNA ligase [Class-I aminoacyl-tRNA synthetase family]

volume: 570. Å3; shape: 0.56; buriedness: 0.84

negative: 0.07; positive: 0.13; polar: 0.16; backbone: 0.38; hydrophobic: 0.26

PDB: 1d2r, 1i6k, 1i6l, 1i6m, 1m83, 1mau, 1maw, 1mb2, 2ov4, 3fhj, 3u1v, 5dk4

HET: 5bx, amp, anl, aqp, atp, ltn, tym

SYYC_HUMAN_1_362 [text] Tyrosine--tRNA ligase, cytoplasmic [Class-I aminoacyl-tRNA synthetase family]

volume: 167. Å3; shape: 0.7; buriedness: 0.87

negative: 0.08; positive: 0.08; polar: 0.38; backbone: 0.24; hydrophobic: 0.22

PDB: 1n3l, 1q11, 4q93, 4qbt

HET: stl, tye

SYY_ECOLI_3_322 [text] Tyrosine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily]

volume: 263. Å3; shape: 0.41; buriedness: 0.88

negative: 0.17; positive: 0.03; polar: 0.33; backbone: 0.32; hydrophobic: 0.15

PDB: 1vbm, 1vbn, 1wq3, 1wq4, 1x8x, 2yxn, 4oud

HET: azy, iyr, ysa

SYY_METJA_1_306 [text] Tyrosine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family. TyrS type 3 subfamily]

volume: 209. Å3; shape: 0.49; buriedness: 0.9

negative: 0.1; positive: 0.06; polar: 0.34; backbone: 0.31; hydrophobic: 0.19

Domains/regions: [R] Tyrosine

PDB: 1j1u, 1u7d, 1u7x, 1zh0, 1zh6, 2ag6, 2hgz, 2pxh, 2zp1, 3d6u, 3d6v, 3n2y, 3qe4, 4hjr, 4hjx, 4hk4, 4hpw, 4nd6, 4nd7, 4nda, 4nx2, 4pbr, 4pbs, 4pbt

HET: 2l7, 2lq, 2lt, 3ym, 4af, 4bf, 4cf, bp5, f2y, iyr, nal, niy, pbf, t11, tef, tfq

SYYM_HUMAN_28_377 [text] Tyrosine--tRNA ligase, mitochondrial [Class-I aminoacyl-tRNA synthetase family]

volume: 364. Å3; shape: 0.4; buriedness: 0.89

negative: 0.15; positive: 0.07; polar: 0.26; backbone: 0.39; hydrophobic: 0.14

PDB: 2pid, 3zxi

HET: tya, ysa

SYY_STAAE_1_420 [text] Tyrosine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily]

volume: 296. Å3; shape: 0.52; buriedness: 0.9

negative: 0.2; positive: 0.05; polar: 0.34; backbone: 0.29; hydrophobic: 0.12

PDB: 1jii, 1jij, 1jik, 1jil

HET: 383, 485, 545, 629