VDRA_DANRE_155_453

Vitamin D3 receptor A [Nuclear hormone receptor family. NR1 subfamily]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer[show domain annotation]
 • A1 (VDRA_DANRE):R: Hinge (175,179,182)
R: Ligand-binding (255,258,259,261,262,264,265,296,299,300,302,303,306,314,316,323,328,331,333,337,338,341,419,422,423,427,430,440,444,448)
R: Vitamin D3 binding (255,258,259,261,262,264,265)
R: Vitamin D3 binding (299,300,302,303,306)
175,179,182,255,258,259,261,262,264,265,296,299,300,302,303,306,314,316,323,328,331,333,337,338,341,419,422,423,427,430,440,444,448

Full PDB list

2hbh,2hc4,2hcd,3dr1,3o1d,3o1e,4fhh,4fhi,4g1d,4g1y,4g1z,4g20,4g21,4g2h,4ia1,4ia2,4ia3,4ia7,4q0a,4ruj,4ruo,4rup,5e7v,5lga (redundant pocketome entry)

Contact map

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ligand
A1
Y
1
7
5
Y
1
7
9
F
1
8
2
L
2
5
5
L
2
5
8
A
2
5
9
L
2
6
1
V
2
6
2
Y
2
6
4
S
2
6
5
I
2
9
6
I
2
9
9
M
3
0
0
R
3
0
2
S
3
0
3
S
3
0
6
W
3
1
4
C
3
1
6
Y
3
2
3
V
3
2
8
A
3
3
1
H
3
3
3
L
3
3
7
L
3
3
8
L
3
4
1
L
4
1
9
E
4
2
2
H
4
2
3
Y
4
2
7
L
4
3
0
L
4
4
0
V
4
4
4
F
4
4
8
[1]4g1d.a 0vk 34 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4g1y.a 0vo 30 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4g20.a 484 34 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3dr1.a c5d 33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2hbh.a xe4 29 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4fhh.a 0u3 33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4g2h.a 0vq 34 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4g1z.a 0vp 35 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4q0a.c 4oa 27 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2hc4.a vdx 30 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5lga.a 6vh 42 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2hcd.a biv 36 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3o1d.a g72 41 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5e7v.a m7e 38 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4fhi.a 0s4 33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4ruj.a vdx 30 . . . . . . . . . . . . . . . . . . . . . . H . . . . . . . . . .
[1]3o1e.a h97 41 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4rup.a h97 41 . . . . . . . . . . . . . . . . . . . . . . H . . . . . . . . . .
[1]4ruo.x biv 36 . . . . . . . . . . . . . . . . . . . . . . H . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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