SYY_METJA_1_306

Tyrosine--tRNA ligase [Class-I aminoacyl-tRNA synthetase family. TyrS type 3 subfamily]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer[show domain annotation]
 • A1 (SYY_METJA):R: Tyrosine (151,154,155,158)
32:36,63,65,67,70,108,109,137,159:162,164,173
32:36,63,65,67,70,108,109,137,151,154,155,158:162,164,173

Full PDB list

1j1u,1u7d,1u7x,1zh0,1zh6,2ag6,2hgz,2pxh,2zp1,3d6u,3d6v,3n2y,3qe4,4hjr,4hjx,4hk4,4hpw,4nd6,4nd7,4nda,4nx2,4pbr,4pbs,4pbt

Contact map

[download in TSV format]
   
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ligand
A1
Y
3
2
I
3
3
G
3
4
F
3
5
E
3
6
I
6
3
L
6
5
A
6
7
H
7
0
F
1
0
8
Q
1
0
9
I
1
3
7
Y
1
5
1
M
1
5
4
Q
1
5
5
D
1
5
8
I
1
5
9
H
1
6
0
Y
1
6
1
L
1
6
2
V
1
6
4
Q
1
7
3
[2]4pbt.a 2lq 23 G . . . . . E . . W M . . . . S . . . K . .
[2]4pbr.a 2l7 19 G . . . . . E . . W M . . . . S . . . K . .
[1]1j1u.a Y 13 . . . . . . . . . . . . . . . . . . . . . .
[2]4pbs.a 2l7 19 G . . . . . E . . . . . . . . G C . . . . .
[1]1u7d.a none . . . . . . . . . . . - . . . . . . . . . .
[1]1u7x.b none Q . . . . . . . . . . . . . . A . . . P . .
[2]1zh0.a nal 16 L . . . . . . . . . . . . . . P A . . Q . .
[2]1zh6.a 4af 15 L . . . . . . . . . . . . . . G C . . R . .
[2]2ag6.a 4bf 13 L . . . . . . . . . . . . . . P L . . E . .
[2]2hgz.a pbf 20 G . . . . . . . . . . . . . . T S . R . . .
[3]2pxh.a bp5 18 G . . . . . Y . A . . . . . E G W . . S . .
[1]2zp1.a iyr 14 . . . . . . . . A . . . . . . T S . . . . .
[2]3d6u.a t11 19 I . . . . . . . F . M . . . . P L . . E . .
[2]3d6v.a tfq 17 I . . . . . . . F . M . . . . P L . . E . .
[2]3n2y.a tef 17 L . . . . . I . . . M . . . . G . . . V G .
[2]3qe4.b 4cf 14 L . . . . . V . . W M . . . . G A . . . . .
[1]4hjr.a none R . . . . . Y . G N C . . . . N . . . S . .
[1]4hjx.a f2y 15 R . . . . . Y . G N C . . . . N . . . S . .
[1]4hk4.a none E . . . . . S . G . G . . . . N . . . V . .
[1]4hpw.a 3ym 15 E . . . . . S . G . G . . . . N . . . V . .
[1]4nd6.a none H . . . . . . . C . . . . . . S A . . R . .
[1]4nd7.a none H . . . . . . . C . . . . . . S A . . R . .
[1]4nda.a niy 16 H . . . . . . . C . . . . . . S A . . R . .
[1]4nx2.a 2lt 15 L . . . . . I . G I L . . . . S . . . M . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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