SYK_GEOSE_2_494

Lysine--tRNA ligase [Class-II aminoacyl-tRNA synthetase family]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer
 • A1 (SYK_GEOSE):208,209,230,232,254,256,257,259,261:263,266,268,270,272,367,371,403,405,412:417,419,464:466,468,471,482208,209,230,232,254,256,257,259,261:263,266,268,270,272,367,371,403,405,412:417,419,464:466,468,471,482
Metals (Me):Mg

Full PDB list

3a74,3e9h,3e9i

Contact map

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ligand
A1 Me
G
2
0
8
A
2
0
9
A
2
3
0
E
2
3
2
R
2
5
4
E
2
5
6
G
2
5
7
S
2
5
9
R
2
6
1
H
2
6
2
N
2
6
3
F
2
6
6
M
2
6
8
E
2
7
0
Y
2
7
2
E
3
6
7
E
3
7
1
R
4
0
3
E
4
0
5
E
4
1
2
H
4
1
3
A
4
1
4
N
4
1
5
A
4
1
6
F
4
1
7
E
4
1
9
G
4
6
4
L
4
6
5
G
4
6
6
G
4
6
8
R
4
7
1
I
4
8
2
[1]3e9h.a kaa,mg 33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3e9h.b kaa 32 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3e9i.a xah 33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mg
[1]3a74.a b4p,lyn 63 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mg
[1]3a74.d b4p,lyn,mg 64 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mg

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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