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RXRA_HUMAN_222_461_coactiv

Retinoic acid receptor RXR-alpha [Nuclear hormone receptor family. NR2 subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (RXRA_HUMAN):D: NR LBD (269, 271:274, 276, 277, 279:281, 284, 289, 290, 294, 295, 297, 298, 301, 302, 305, 381, 436, 439:458)
459:469
269, 271:274, 276, 277, 279:281, 284, 289, 290, 294, 295, 297, 298, 301, 302, 305, 381, 436, 439:469

Full PDB list

1dkf, 1fby, 1fm6, 1fm9, 1g1u, 1g5y, 1k74, 1lbd, 1mv9, 1mvc, 1mzn, 1rdt, 1xdk, 1xls, 1xv9, 1xvp, 2acl, 2p1t, 2p1u, 2p1v, 2zxz, 2zy0, 3a9e, 3dzu, 3dzy, 3e00, 3e94, 3fal, 3fc6, 3fug, 3h0a, 3kwy, 3nsp, 3nsq, 3oap, 3ozj, 3pcu, 3r29, 3r2a, 3r5m, 3uvv, 4j5w, 4j5x, 4k4j, 4k6i, 4m8e, 4m8h, 4n5g, 4n8r, 4nqa, 4oc7, 4poh, 4poj, 4pp3, 4pp5, 4rfw, 4rmc, 4rmd, 4rme, 4zo1, 4zsh, 5ec9, 5gym, 5ji0, 5lyq, 5mj5, 5mk4, 5mkj, 5mku, 5mmw, 5tbp (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
D
2
7
3
L
2
7
6
F
2
7
7
L
2
7
9
V
2
8
0
E
2
8
1
K
2
8
4
F
2
8
9
L
2
9
4
D
2
9
5
Q
2
9
7
V
2
9
8
L
3
0
1
R
3
0
2
W
3
0
5
T
4
4
9
F
4
5
0
E
4
5
3
M
4
5
4
E
4
5
6
A
4
5
7
P
4
5
8
[1]1fm6.u ERHKILHRLLQEGSP127 . . . . . . . . . . . . . . . . . . . . . .
[1]1fm9.a HKILHRLLQE86 . . . . . . . . . . . . . . . . . . . . . .
[1]1rdt.a HKILHRLLQ77 . . . . . . . . . . . . . . . . . . . . - -
[1]1xdk.a NHPMLMNLLKD90 . . . . . . . . . . . . . . . . . . . . . .
[1]1xls.a AKENALLRYLLDKDD124 . . . . . . . . . . . . . . . . . . . . . .
[1]1xvp.c ERHKILHRLLQE,T-GLSAM144 . . . . . . . . . . . . . . . . . . . . . .
[1]2p1t.a HKILHRLLQD86 . . . . . . . . . . . . . . . . . . . . . .
[1]3fug.a HKILHRLLQA86 . . . . . . . . . . . . . . . . . . . . . .
[1]4nqa.h HKILHRLLQDSS101 . . . . . . . . . . . . . . . . . . . . . .
[1]5ji0.a KILHRLLQE76 . . . . . . . . . . . . . . . . . . . - - -
[1]5mj5.a KHKILHRLLQDS104 . . . . . . . . . . . . . . . . . . . . . -
[1]5mk4.a KHKILHRLLQ90 . . . . . . . . . . . . . . . . . . . . . -
[1]5mkj.a KILHRLLQD79 . . . . . . . . . . . . . . . . . . . . . .
[1]5mku.a HKILHRLLQDS95 . . . . . . . . . . . . . . . . . . . . - -
[1]5mmw.a KILHRLLQ71 . . . . . . . . . . . . . . . . . . . . . -
[2]2acl.a l05,R-F-F-GLQV-QVFALRLQDKKL192 . . . . . . . . . . . . . . . . . . . . . -
[2]2acl.c l05,REARQQRF-M-GLQVEF-HSEQVFALRLQDKKL-W302 . . . . . . . . . . . . . . . . . . . . . .
[2]2acl.e l05,REAR-F-F-GLQ-QVFALRLQDKKL210 . . . . . . . . . . . . . . . . . . . . . -
[2]2acl.g l05,R-R-F-T-FAKAGLQV-QVFALRLQDKKL229 . . . . . . . . . . . . . . . . . . . . . -
[2]3fal.a lo2,REARQQRFAHF-FAKAGLQV-QVFALRLQDKKL295 . . . . . . . . . . . . . . . . . . . . . -
[2]3fal.c lo2,REARQQRFAHFT-F-FAKAGLQVEFI-QVFALRLQDKKL341 . . . . . . . . . . . . . . . . . . . . . -
[2]3fc6.a lx2,REARQQRF-T-F-F-GLQV-QVFALRLQDKKL279 . . . . . . . . . . . . . . . . . . . . . -
[2]3fc6.c lx2,REARQQRF-T-F-FAKAGLQVEFI-QVFALRLQDKKL326 . . . . . . . . . . . . . . . . . . . . . -
[2]3r29.a TNMGLEAIIRKALMGK119 . . . . . . . . . . . . . . . . . . . - - -
[2]3r29.b GLEAIIRKALM83 . . . . . . . . . . . . . . . . . . . - - -
[2]3r2a.b NMGLEAI50 . . . . . . . . . . . . . . . . . . . . . .
[2]3r2a.d TNMGLEAII65 . . . . . . . . . . . . . . . . . . . . . .
[3]3h0a.a TSHKLVQLLTT86 . . . . . . . . . . . . . . . . . . . - - -
[4]1mv9.a KHKILHRLLQD98 . . . . . . . . . . . . . . . . . . . . . .
[5]4zo1.b none . . . . . . . . . . . . . . . . . . . - - -
[6]4j5x.d none . . . . . . . . . . . . . . . . . . . . . .
[7]4j5w.c none . . . . . . . . . . . . . . . . . . . . . H
[8]4j5w.d none . . . . . . . . . . . . . . . . . . . . . R

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
C
2
6
9
A
2
7
1
A
2
7
2
D
2
7
3
K
2
7
4
L
2
7
6
F
2
7
7
L
2
7
9
V
2
8
0
E
2
8
1
K
2
8
4
F
2
8
9
S
2
9
0
L
2
9
4
D
2
9
5
Q
2
9
7
V
2
9
8
L
3
0
1
R
3
0
2
W
3
0
5
K
3
8
1
L
4
3
6
F
4
3
9
K
4
4
0
L
4
4
1
I
4
4
2
G
4
4
3
D
4
4
4
T
4
4
5
P
4
4
6
I
4
4
7
D
4
4
8
T
4
4
9
F
4
5
0
L
4
5
1
M
4
5
2
E
4
5
3
M
4
5
4
L
4
5
5
E
4
5
6
A
4
5
7
P
4
5
8
H
4
5
9
Q
4
6
0
M
4
6
1
T
4
6
2
.
4
6
3
.
4
6
4
.
4
6
5
.
4
6
6
.
4
6
7
.
4
6
8
.
4
6
9
[1]1fm6.u . . . * . . * . . * * . . * . * . . . . . . . . . . . . . . . * * * * * * * * * . . - - - - - - - - - - -
[1]1fm9.a . . . * . . * . . . * . . . . . . . . . . . . . . . . . . . . * * * * * * * * * . . - - - - - - - - - - -
[1]1rdt.a . . . * . . * . . . * . . . . . . . . . . . . . . . . . . . . * * * * * * * * * - - - - - - - - - - - - -
[1]1xdk.a . . . * . . * . . . . . . . . . . . * . . . . . . . . . . . . * * * * * * * * * * * - - - - - - - - - - -
[1]1xls.a . . . * . . * . . . * . . * . * . . . . . . . . . . . . . . . * * * * * * * * * . . - - - - - - - - - - -
[1]1xvp.c . . . * . . * . . * . . . * . . . . . . . . . . . . . . . . . * * * * * * * * * . . . . . . - - - - - - -
[1]2p1t.a . . . * . . * . . * * . . * . . . . * . . . . . . . . . . . . * * * * * * * * * * * - - - - - - - - - - -
[1]3fug.a . . . * . . * . . * . . . * . . . . * . . . . . . . . . . . . * * * * * * * * * * * - - - - - - - - - - -
[1]4nqa.h . . . * . . * . . * * . . . . . . . * . . . . . . . . . . . . * * * * * * * * * . * - - - - - - - - - - -
[1]5ji0.a . . . * . . * . . * . . . * . . . . * . . . . . . . . . . - - - * * * * * * * - - - - - - - - - - - - - -
[1]5mj5.a . . . * . . * . . * * . . * . * . . * . . . . . . . . . . . . * * * * * * * * * * - - - - - - - - - - - -
[1]5mk4.a . . . * . . * . . * * . . * . * . . * . . . . . . . . . . . . . * * * * * * * * * - - - - - - - - - - - -
[1]5mkj.a . . . * . . * . . * . . . * . . . . * . . . . . . . . . . . . * * * * * * * * * * * - - - - - - - - - - -
[1]5mku.a . . . * . . * . . * . . . * . . . . * . . . . . . . . . . . . . * * * * * * * * - - - - - - - - - - - - -
[1]5mmw.a . . . * . . * . . * . . . * . * . . * . . . . . . . . . . . . * * * * * * * * * * - - - - - - - - - - - -
[2]2acl.a . . . . . . . . . . . . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . - - - - - - - - - - - -
[2]2acl.c . . . . . . * . . * . . . . . * . . * . . . . . . . . . . . . . . . . . . . . . . . - - - - - - - - - - -
[2]2acl.e . . . . . . . . . * * . . . . * . . * . . . . . . . . . . . . . . . . . . . . . . - - - - - - - - - - - -
[2]2acl.g . . . . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - - - - - - - - - - - -
[2]3fal.a . . . . . . * . . . * . . . . * . . . . . - - - - - - - - - - - . . . . . . . . . - - - - - - - - - - - -
[2]3fal.c . . . . . . . . . * . . . . . . . . . . . - - - - - - - - - - - . . . . . . . . . - - - - - - - - - - - -
[2]3fc6.a . . . . . . * . . . * . . . . . . . . . . . . . . - - - - - - . . . . . . . . . . - - - - - - - - - - - -
[2]3fc6.c . . . * . . . . . . * . . . . * . . . . . - - - - - - - - - - . . . . . . . . . . - - - - - - - - - - - -
[2]3r29.a . . * * . * . . . * * . . * . * . . . * . . . . . . . . . . . . . . . . . * . - - - - - - - - - - - - - -
[2]3r29.b . . * * . * . . . * . . . * . . . . * * . . . . . . . . . . . . . . . . . . . - - - - - - - - - - - - - -
[2]3r2a.b . . . * . * . . . . * . . * . * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - - - - - - - -
[2]3r2a.d . . . * . * . . . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - - - - - - - -
[3]3h0a.a . . . * . . . . . . . . . . . . . . * . . . . . . . . . . . . * * * * * * * . - - - - - - - - - - - - - -
[4]1mv9.a . . . * . . * . . * . . . * . * . . * . . . . . . . . . . . . * * * * * * * * * * * * * - - - - - - - - -
[5]4zo1.b . . . * . * . . . * . . . . . . . . * . . . . . . * . * * * * * * * * * * * * - - - - - - - - - - - - - -
[6]4j5x.d . . . * . . * . . . * . . . . * . . * . . . . . . . . . . . . * * * * * * * * * * * R H K I L H R L L Q E
[7]4j5w.c . . . * . . * . . . . . . . . . . . * . . . . . . . . . . . . * * * * * * * * * * H K I L H R L L Q E - -
[8]4j5w.d . . . * . . * . . . . . . * . * . . * . . . . . . . . . . . . * * * * * * * * * * R * K I L H R L L Q E -

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1fm6.u:ERHKILHRLLQEGSP
1fm9.a:HKILHRLLQE
1rdt.a:HKILHRLLQ
1xdk.a:NHPMLMNLLKD
1xls.a:AKENALLRYLLDKDD
1xvp.c:ERHKILHRLLQE,T-GLSAM
2p1t.a:HKILHRLLQD
3fug.a:HKILHRLLQA
4nqa.h:HKILHRLLQDSS
5ji0.a:KILHRLLQE
5mj5.a:KHKILHRLLQDS
5mk4.a:KHKILHRLLQ
5mkj.a:KILHRLLQD
5mku.a:HKILHRLLQDS
5mmw.a:KILHRLLQ
2acl.a:R-F-F-GLQV-QVFALRLQDKKL,l05
2acl.c:REARQQRF-M-GLQVEF-HSEQVFALRLQDKKL-W,l05
2acl.e:REAR-F-F-GLQ-QVFALRLQDKKL,l05
2acl.g:R-R-F-T-FAKAGLQV-QVFALRLQDKKL,l05
3fal.a:REARQQRFAHF-FAKAGLQV-QVFALRLQDKKL,lo2
3fal.c:REARQQRFAHFT-F-FAKAGLQVEFI-QVFALRLQDKKL,lo2
3fc6.a:REARQQRF-T-F-F-GLQV-QVFALRLQDKKL,lx2
3fc6.c:REARQQRF-T-F-FAKAGLQVEFI-QVFALRLQDKKL,lx2
3r29.a:TNMGLEAIIRKALMGK
3r29.b:GLEAIIRKALM
3r2a.b:NMGLEAI
3r2a.d:TNMGLEAII
3h0a.a:TSHKLVQLLTT
1mv9.a:KHKILHRLLQD
4zo1.b is apo
4j5x.d is apo
4j5w.c is apo
4j5w.d is apo
[1] 1fm6.u
0.1
0.2 0.4 1.3 2.4 0.4 0 0.1 0.2 0.3 0.1 0.3 0.1 0.2 0.3 19 19 18 19 23 22 21 23 4.3 3.5 1.6 2.4 2.7 0.1 - - - -
[1] 1fm9.a 0
0
0.1 1.1 1.9 0.7 0.2 0.1 0.2 0.1 0.1 0.4 0.1 0.2 0.1 19 19 19 21 25 24 24 24 4.7 3.7 1.3 3.3 2.1 0.1 - - - -
[1] 1rdt.a 0.1 0
0.2
1.2 1.3 0.5 0.1 0.1 0.2 0.1 0.1 0.3 0.1 0.2 0.1 18 18 18 20 23 22 22 23 3.9 3.6 1.5 1.6 2.5 0.1 - - - -
[1] 1xdk.a 1.0 0.4 1.0
0.2
2.5 4.0 0.2 0.2 0.1 0.6 0.1 0.1 0.1 0.3 0.1 21 23 21 23 26 28 27 28 9.5 4.2 1.6 5.6 1.5 0.2 - - - -
[1] 1xls.a 0.3 0.1 0.1 1.2
0.1
0.3 0.1 0.1 0.6 0.4 0.1 0.2 0.1 0.4 0.2 18 18 18 18 23 23 22 24 4.6 4.2 1.7 2.1 3.0 0.2 - - - -
[1] 1xvp.c 0.5 0.6 0.6 0.9 2.8
0
0.4 0.3 0.3 0.4 0.5 0.5 0.3 0.6 0.2 18 18 18 20 21 22 21 22 3.7 3.7 1.3 2.3 2.2 0.4 - - - -
[1] 2p1t.a 0.5 0.4 0.9 1.0 5.2 2.9
0.1
0 0.3 0.2 0 2.0 0 0.2 0.1 22 25 21 23 26 30 27 30 8.0 4.1 1.6 3.6 2.1 0 - - - -
[1] 3fug.a 0.3 0.4 0.6 0.6 5.2 2.1 0
0
0.3 0.2 0.1 1.7 0 0.2 0.2 22 24 20 23 26 30 27 30 7.7 3.8 1.7 3.1 2.3 0 - - - -
[1] 4nqa.h 1.0 1.0 1.6 1.2 3.7 4.5 0.6 0.3
0.1
0.1 0.4 0.3 0.1 0.7 0.3 20 25 19 22 27 27 25 28 6.7 4.9 2.1 3.9 1.8 0.6 - - - -
[1] 5ji0.a 0.2 0.4 0.6 0.5 2.8 1.1 0 0 0.2
0.1
0.2 0.1 0 0.1 0.1 18 16 18 19 23 24 22 23 3.2 3.8 1.5 1.8 1.9 0 - - - -
[1] 5mj5.a 0.3 0.4 0.5 1.1 3.1 1.4 0 0 0.3 0.4
0.1
0 0.1 0.4 0.1 19 20 19 20 24 26 24 25 5.8 3.7 1.8 3.5 2.8 0 - - - -
[1] 5mk4.a 2.5 2.3 2.9 2.2 5.1 3.7 2.4 2.4 0.5 0.2 0.1
0
0 2.7 0 21 23 20 22 25 25 25 26 6.8 5.1 3.0 4.9 2.2 2.4 - - - -
[1] 5mkj.a 0.9 0.7 1.2 0.7 3.8 3.4 0.1 0.1 0.3 0.6 0.3 0.5
0.1
0.5 0.2 21 25 20 24 26 29 25 29 7.4 3.8 2.0 3.8 1.9 0.1 - - - -
[1] 5mku.a 0 0.3 0.3 0.5 3.6 1.0 0.1 0.1 0.2 0.1 0.1 0.1 0.2
0
0 19 19 19 21 24 24 24 25 4.2 3.7 1.8 2.3 2.2 0.1 - - - -
[1] 5mmw.a 0.2 0.4 0.6 0.6 3.4 2.4 0.1 0 0.2 0.5 0.1 0 0.1 0.4
0
19 20 18 20 24 25 25 26 5.5 3.9 2.0 3.5 2.6 0.1 - - - -
[2] 2acl.a 0.1 0.1 0.2 0.4 2.0 0.2 0.1 0.1 0.2 0.1 0.1 0 0.1 0 0.2
0.1
0.2 0.7 0 0.4 1.1 0.7 0.9 0 0.1 0.3 0.2 1.2 0.1 - - - -
[2] 2acl.c 1.7 2.0 1.3 1.4 2.5 1.3 0.9 1.0 0.4 0.2 0.2 0.2 0.2 1.2 0.1 0.5
0.1
0.7 0.9 1.1 2.5 1.2 1.7 0 0.3 0.3 0.2 1.3 1.1 - - - -
[2] 2acl.e 0.7 0.4 0.3 0.9 3.0 0.4 0.4 0.5 0.2 0 0.3 0.5 0.2 0.5 0.2 0.9 0.2
0.1
0.3 0.9 0.8 0.5 0.5 0.1 0.1 1.1 0.1 1.7 0.4 - - - -
[2] 2acl.g 0.1 0.1 0.3 0.4 3.4 0.4 0 0 0 0 0 0.1 0.1 0 0 0.2 0.3 0.7
0.1
0.5 1.1 1.2 1.4 0 0.1 0.3 0 1.2 0 - - - -
[2] 3fal.a 0 0.1 0.1 0.4 1.8 0.1 0.1 0.2 0.1 0 0.2 0.1 0.1 0.1 0.1 0.6 1.3 1.1 1.1
0
0.4 1.2 1.1 0 0.4 0.5 0.2 1.5 0.1 - - - -
[2] 3fal.c 0 0 0 0.2 1.8 0.2 0.1 0.2 0.1 0 0.1 0.1 0.1 0.1 0.1 0.7 0.3 1.0 0.3 0.1
0.1
0.3 0.1 0 0.2 0.2 0.2 1.3 0.1 - - - -
[2] 3fc6.a 0.1 0.2 0.1 0.9 1.9 0.3 0.1 0.1 0.1 0 0.4 0.1 0.1 0.2 0.1 0.3 0 0.5 0.1 0.7 1.6
0.3
0.8 0.1 0.3 0.7 0.2 1.0 0.1 - - - -
[2] 3fc6.c 0 0.1 0.1 0.1 1.6 0.2 0.1 0.1 0.1 0 0.1 0.1 0.1 0.1 0.1 0.4 0.1 1.1 0.3 0.2 0.2 0
0
0 0.4 0.4 0.2 1.4 0.1 - - - -
[2] 3r29.a 0.6 0.5 0.6 1.1 1.6 0.3 0.3 0.3 0.1 0.4 0.2 0.3 0.3 0.7 0.3 2.9 3.4 4.4 3.7 4.0 4.5 4.5 5.5
0.1
0.2 0.9 0 1.6 0.3 - - - -
[2] 3r29.b 0.6 0.6 0.9 1.4 2.5 1.2 0.5 0.5 0.4 0.1 0.1 0.1 0.1 0.5 0.1 2.8 2.5 3.6 3.2 4.4 3.7 6.0 5.9 0.1
0
0.5 0.1 1.6 0.5 - - - -
[2] 3r2a.b 0.4 0.4 0.2 0.2 2.1 0.3 0.3 0.3 0.4 0.4 0.1 0.1 0.3 0.2 0.1 1.3 0.9 2.0 1.5 1.6 2.0 3.8 3.7 0.1 0
0.1
0.3 1.5 0.1 - - - -
[2] 3r2a.d 0.4 0.5 0.4 0.2 1.8 0.2 0.1 0.1 0.1 0.1 0 0 0 0.2 0 4.0 2.8 5.1 3.7 2.0 2.1 4.1 4.4 0 0 0.1
0
1.1 0.1 - - - -
[3] 3h0a.a 1.2 1.4 1.7 0.7 2.6 3.0 0.7 0.6 0.2 0.4 0.6 0.2 0.2 1.0 0.4 17 14 17 19 20 21 19 20 4.7 4.2 1.2 4.4
0
0.6 - - - -
[4] 1mv9.a 1.9 0.4 0.4 0.6 5.6 2.6 0 0.1 0.3 0.2 0 1.8 0 0.2 0.1 26 30 23 29 30 35 29 35 12 3.9 1.5 3.4 2.5
0
- - - -
[5] 4zo1.b 30 28 28 28 33 31 27 27 27 24 24 28 24 28 24 29 33 24 28 27 28 27 27 35 29 20 29 22 28
-
- - -
[6] 4j5x.d 61 54 50 55 57 64 56 55 54 51 50 51 47 58 44 54 59 50 57 62 62 59 60 56 48 30 41 36 58 -
-
- -
[7] 4j5w.c 54 50 48 48 50 55 47 47 57 48 49 47 45 54 44 47 52 43 50 54 54 50 52 48 43 31 37 37 52 - -
-
-
[8] 4j5w.d 60 53 49 52 55 62 54 53 57 54 53 52 50 57 47 53 60 49 56 59 60 58 58 51 48 32 37 38 59 - - -
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (8 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1fm6.u
1fm9.a
1rdt.a
1xdk.a
1xls.a
1xvp.c
2p1t.a
3fug.a
4nqa.h
5ji0.a
5mj5.a
5mk4.a
5mkj.a
5mku.a
5mmw.a
2acl.a
2acl.c
2acl.e
2acl.g
3fal.a
3fal.c
3fc6.a
3fc6.c
3r29.a
3r29.b
3r2a.b
3r2a.d
3h0a.a
1mv9.a
4zo1.b
4j5x.d
4j5w.c
4j5w.d
[1] 1fm6.u
0
.08 .06 .23 .10 .12 .19 .19 .15 .15 .12 .14 .19 .12 .12 .59 .59 .60 .57 .58 .61 .59 .60 .63 .64 .62 .66 .23 .30 .68 1.5 1.3 1.4
[1] 1fm9.a .08
0
.04 .19 .09 .11 .21 .21 .18 .15 .14 .17 .22 .12 .13 .59 .60 .63 .59 .57 .61 .57 .58 .63 .68 .61 .64 .21 .32 .68 1.5 1.3 1.4
[1] 1rdt.a .06 .04
0
.20 .08 .12 .21 .21 .18 .14 .14 .17 .22 .12 .15 .57 .59 .62 .57 .56 .60 .56 .57 .61 .65 .59 .62 .22 .33 .68 1.5 1.3 1.4
[1] 1xdk.a .23 .19 .20
0
.22 .21 .10 .12 .15 .24 .14 .22 .11 .21 .14 .71 .70 .76 .72 .72 .74 .71 .73 .77 .76 .75 .76 .29 .24 .76 1.4 1.2 1.3
[1] 1xls.a .10 .09 .08 .22
0
.12 .23 .23 .22 .15 .15 .20 .24 .16 .17 .60 .60 .62 .60 .55 .60 .58 .58 .64 .67 .59 .63 .21 .35 .71 1.5 1.3 1.4
[1] 1xvp.c .12 .11 .12 .21 .12
0
.21 .20 .23 .13 .13 .18 .22 .12 .13 .57 .59 .61 .57 .56 .57 .57 .58 .62 .63 .62 .64 .20 .33 .64 1.5 1.3 1.4
[1] 2p1t.a .19 .21 .21 .10 .23 .21
0
.03 .14 .22 .13 .14 .04 .20 .11 .72 .71 .74 .70 .72 .73 .72 .74 .77 .75 .76 .79 .32 .16 .79 1.4 1.2 1.3
[1] 3fug.a .19 .21 .21 .12 .23 .20 .03
0
.13 .22 .13 .13 .05 .18 .12 .71 .70 .73 .69 .72 .72 .72 .74 .76 .75 .76 .79 .32 .16 .77 1.4 1.2 1.3
[1] 4nqa.h .15 .18 .18 .15 .22 .23 .14 .13
0
.24 .18 .18 .13 .19 .17 .68 .66 .72 .67 .69 .71 .69 .70 .74 .73 .74 .76 .30 .26 .73 1.4 1.2 1.3
[1] 5ji0.a .15 .15 .14 .24 .15 .13 .22 .22 .24
0
.16 .20 .23 .11 .16 .51 .50 .54 .51 .52 .52 .51 .53 .57 .56 .57 .60 .15 .35 .62 1.5 1.3 1.4
[1] 5mj5.a .12 .14 .14 .14 .15 .13 .13 .13 .18 .16
0
.12 .13 .11 .03 .65 .64 .66 .63 .65 .67 .65 .66 .69 .67 .69 .72 .25 .25 .69 1.4 1.3 1.4
[1] 5mk4.a .14 .17 .17 .22 .20 .18 .14 .13 .18 .20 .12
0
.15 .14 .11 .69 .66 .69 .66 .69 .71 .69 .70 .73 .71 .73 .77 .28 .25 .72 1.5 1.3 1.4
[1] 5mkj.a .19 .22 .22 .11 .24 .22 .04 .05 .13 .23 .13 .15
0
.19 .12 .72 .71 .75 .71 .74 .74 .73 .75 .78 .76 .78 .81 .32 .17 .77 1.4 1.2 1.3
[1] 5mku.a .12 .12 .12 .21 .16 .12 .20 .18 .19 .11 .11 .14 .19
0
.11 .61 .60 .62 .58 .62 .62 .62 .63 .66 .65 .66 .69 .25 .31 .64 1.5 1.3 1.4
[1] 5mmw.a .12 .13 .15 .14 .17 .13 .11 .12 .17 .16 .03 .11 .12 .11
0
.66 .64 .68 .64 .66 .67 .66 .67 .70 .69 .70 .72 .26 .23 .70 1.4 1.2 1.3
[2] 2acl.a .59 .59 .57 .71 .60 .57 .72 .71 .68 .51 .65 .69 .72 .61 .66
0
.06 .07 .03 .05 .04 .05 .06 .17 .17 .13 .16 .51 .84 .91 2.0 1.8 1.9
[2] 2acl.c .59 .60 .59 .70 .60 .59 .71 .70 .66 .50 .64 .66 .71 .60 .64 .06
0
.07 .07 .07 .08 .06 .10 .20 .18 .15 .19 .50 .83 .92 2.0 1.8 1.9
[2] 2acl.e .60 .63 .62 .76 .62 .61 .74 .73 .72 .54 .66 .69 .75 .62 .68 .07 .07
0
.05 .08 .07 .08 .09 .19 .17 .15 .18 .54 .86 .92 2.0 1.8 1.9
[2] 2acl.g .57 .59 .57 .72 .60 .57 .70 .69 .67 .51 .63 .66 .71 .58 .64 .03 .07 .05
0
.06 .05 .06 .07 .16 .14 .13 .16 .52 .83 .89 2.0 1.8 1.9
[2] 3fal.a .58 .57 .56 .72 .55 .56 .72 .72 .69 .52 .65 .69 .74 .62 .66 .05 .07 .08 .06
0
.06 .04 .04 .16 .18 .11 .14 .53 .84 .94 2.0 1.8 1.9
[2] 3fal.c .61 .61 .60 .74 .60 .57 .73 .72 .71 .52 .67 .71 .74 .62 .67 .04 .08 .07 .05 .06
0
.06 .05 .15 .15 .11 .14 .54 .86 .89 2.0 1.8 1.9
[2] 3fc6.a .59 .57 .56 .71 .58 .57 .72 .72 .69 .51 .65 .69 .73 .62 .66 .05 .06 .08 .06 .04 .06
0
.05 .18 .19 .13 .17 .54 .85 .94 2.0 1.8 1.9
[2] 3fc6.c .60 .58 .57 .73 .58 .58 .74 .74 .70 .53 .66 .70 .75 .63 .67 .06 .10 .09 .07 .04 .05 .05
0
.14 .16 .09 .13 .55 .86 .92 2.0 1.8 1.9
[2] 3r29.a .63 .63 .61 .77 .64 .62 .77 .76 .74 .57 .69 .73 .78 .66 .70 .17 .20 .19 .16 .16 .15 .18 .14
0
.08 .13 .14 .59 .89 .91 2.0 1.9 1.9
[2] 3r29.b .64 .68 .65 .76 .67 .63 .75 .75 .73 .56 .67 .71 .76 .65 .69 .17 .18 .17 .14 .18 .15 .19 .16 .08
0
.13 .14 .61 .88 .89 2.1 1.9 1.9
[2] 3r2a.b .62 .61 .59 .75 .59 .62 .76 .76 .74 .57 .69 .73 .78 .66 .70 .13 .15 .15 .13 .11 .11 .13 .09 .13 .13
0
.06 .58 .89 .94 2.0 1.8 1.9
[2] 3r2a.d .66 .64 .62 .76 .63 .64 .79 .79 .76 .60 .72 .77 .81 .69 .72 .16 .19 .18 .16 .14 .14 .17 .13 .14 .14 .06
0
.60 .92 .95 2.1 1.9 1.9
[3] 3h0a.a .23 .21 .22 .29 .21 .20 .32 .32 .30 .15 .25 .28 .32 .25 .26 .51 .50 .54 .52 .53 .54 .54 .55 .59 .61 .58 .60
0
.44 .58 1.6 1.4 1.5
[4] 1mv9.a .30 .32 .33 .24 .35 .33 .16 .16 .26 .35 .25 .25 .17 .31 .23 .84 .83 .86 .83 .84 .86 .85 .86 .89 .88 .89 .92 .44
0
.89 1.2 1.1 1.1
[5] 4zo1.b .68 .68 .68 .76 .71 .64 .79 .77 .73 .62 .69 .72 .77 .64 .70 .91 .92 .92 .89 .94 .89 .94 .92 .91 .89 .94 .95 .58 .89
0
2.1 1.8 1.9
[6] 4j5x.d 1.5 1.5 1.5 1.4 1.5 1.5 1.4 1.4 1.4 1.5 1.4 1.5 1.4 1.5 1.4 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.1 2.0 2.1 1.6 1.2 2.1
0
.55 .35
[7] 4j5w.c 1.3 1.3 1.3 1.2 1.3 1.3 1.2 1.2 1.2 1.3 1.3 1.3 1.2 1.3 1.2 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.9 1.9 1.8 1.9 1.4 1.1 1.8 .55
0
.30
[8] 4j5w.d 1.4 1.4 1.4 1.3 1.4 1.4 1.3 1.3 1.3 1.4 1.4 1.4 1.3 1.4 1.3 1.9 1.9 1.9 1.9 1.9 1.9 1.9 1.9 1.9 1.9 1.9 1.9 1.5 1.1 1.9 .35 .30
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 9.0 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1fm6.u
1fm9.a
1rdt.a
1xdk.a
1xls.a
1xvp.c
2p1t.a
3fug.a
4nqa.h
5ji0.a
5mj5.a
5mk4.a
5mkj.a
5mku.a
5mmw.a
2acl.a
2acl.c
2acl.e
2acl.g
3fal.a
3fal.c
3fc6.a
3fc6.c
3r29.a
3r29.b
3r2a.b
3r2a.d
3h0a.a
1mv9.a
4zo1.b
4j5x.d
4j5w.c
4j5w.d
[1] 1fm6.u
0
0.9 0.6 2.1 1.2 1.7 1.8 1.8 1.9 1.0 1.4 1.9 1.9 1.6 1.4 26 26 26 26 15 15 24 25 8.0 8.3 11 11 1.4 1.8 9.8 2.0 2.6 2.5
[1] 1fm9.a 0.9
0
0.5 1.7 1.0 1.9 1.5 1.4 1.6 1.1 1.4 1.9 1.6 1.7 1.4 26 26 26 26 14 15 24 25 8.0 8.3 11 10 1.4 1.5 9.9 1.7 2.3 2.1
[1] 1rdt.a 0.6 0.5
0
1.0 0.9 1.2 1.0 1.0 1.0 1.1 1.0 1.8 1.0 1.7 1.1 25 25 25 25 13 13 23 24 8.0 8.3 8.9 8.7 1.4 1.0 10 0.9 1.1 0.9
[1] 1xdk.a 2.1 1.7 1.0
0
1.7 2.4 0.8 0.8 0.8 0.8 0.9 1.6 0.8 1.4 0.9 26 27 26 26 14 14 24 26 8.1 8.5 10 10 1.2 0.8 9.6 0.7 1.5 1.1
[1] 1xls.a 1.2 1.0 0.9 1.7
0
1.6 1.4 1.3 1.5 0.9 1.1 1.8 1.5 1.6 1.1 25 26 26 26 15 15 24 25 8.1 8.5 11 11 1.3 1.3 10 1.6 2.3 2.1
[1] 1xvp.c 1.7 1.9 1.2 2.4 1.6
0
2.3 2.1 2.2 1.2 1.5 2.0 2.3 1.6 1.5 26 26 26 26 14 15 24 25 8.3 8.7 12 12 1.5 3.9 9.8 6.8 7.8 7.3
[1] 2p1t.a 1.8 1.5 1.0 0.8 1.4 2.3
0
0.3 0.9 0.9 0.6 1.5 0.3 1.4 0.6 26 26 26 26 14 14 24 25 8.1 8.5 10 10 1.3 0.4 9.9 0.7 1.5 1.3
[1] 3fug.a 1.8 1.4 1.0 0.8 1.3 2.1 0.3
0
0.8 0.9 0.6 1.5 0.3 1.4 0.6 26 26 26 26 14 14 24 25 8.1 8.5 10 10 1.2 0.4 9.9 0.7 1.6 1.3
[1] 4nqa.h 1.9 1.6 1.0 0.8 1.5 2.2 0.9 0.8
0
0.9 1.1 1.7 0.9 1.6 1.1 26 26 26 26 14 14 24 25 7.9 8.3 10 10 1.2 0.8 9.7 0.9 1.7 1.2
[1] 5ji0.a 1.0 1.1 1.1 0.8 0.9 1.2 0.9 0.9 0.9
0
1.1 0.8 0.9 0.7 1.0 22 22 22 22 12 12 21 22 7.4 7.7 7.8 7.6 1.4 0.8 9.0 0.9 0.9 0.8
[1] 5mj5.a 1.4 1.4 1.0 0.9 1.1 1.5 0.6 0.6 1.1 1.1
0
1.4 0.5 1.3 0.3 26 26 26 26 14 14 24 26 8.2 8.6 9.7 9.6 1.5 0.6 10 0.5 0.8 0.8
[1] 5mk4.a 1.9 1.9 1.8 1.6 1.8 2.0 1.5 1.5 1.7 0.8 1.4
0
1.4 0.5 1.4 26 26 27 27 14 14 25 26 8.3 8.6 9.7 9.6 1.9 1.5 9.4 1.4 1.4 1.5
[1] 5mkj.a 1.9 1.6 1.0 0.8 1.5 2.3 0.3 0.3 0.9 0.9 0.5 1.4
0
1.3 0.5 26 27 26 26 14 14 25 26 8.2 8.6 10 10 1.3 0.4 9.8 0.6 1.4 1.2
[1] 5mku.a 1.6 1.7 1.7 1.4 1.6 1.6 1.4 1.4 1.6 0.7 1.3 0.5 1.3
0
1.3 26 25 26 26 13 13 24 25 8.4 8.8 9.2 9.1 1.8 1.4 9.4 1.4 1.2 1.4
[1] 5mmw.a 1.4 1.4 1.1 0.9 1.1 1.5 0.6 0.6 1.1 1.0 0.3 1.4 0.5 1.3
0
26 26 26 26 14 14 24 26 8.2 8.6 9.8 9.6 1.4 0.6 10 0.5 0.8 0.8
[2] 2acl.a 26 26 25 26 25 26 26 26 26 22 26 26 26 26 26
0
1.6 1.7 1.9 37 37 1.0 0.9 24 24 27 28 24 26 28 26 26 26
[2] 2acl.c 26 26 25 27 26 26 26 26 26 22 26 26 27 25 26 1.6
0
1.2 2.9 36 37 1.1 1.4 23 23 29 29 24 26 28 27 27 27
[2] 2acl.e 26 26 25 26 26 26 26 26 26 22 26 27 26 26 26 1.7 1.2
0
2.8 37 37 1.6 1.9 24 24 28 28 25 26 29 26 26 26
[2] 2acl.g 26 26 25 26 26 26 26 26 26 22 26 27 26 26 26 1.9 2.9 2.8
0
37 37 1.5 1.3 24 24 28 28 25 26 29 26 27 26
[2] 3fal.a 15 14 13 14 15 14 14 14 14 12 14 14 14 13 14 37 36 37 37
0
0.5 36 36 11 11 10 10 12 14 14 14 14 14
[2] 3fal.c 15 15 13 14 15 15 14 14 14 12 14 14 14 13 14 37 37 37 37 0.5
0
36 37 11 11 10 10 12 14 14 14 14 14
[2] 3fc6.a 24 24 23 24 24 24 24 24 24 21 24 25 25 24 24 1.0 1.1 1.6 1.5 36 36
0
0.4 23 23 27 27 22 24 26 24 25 24
[2] 3fc6.c 25 25 24 26 25 25 25 25 25 22 26 26 26 25 26 0.9 1.4 1.9 1.3 36 37 0.4
0
24 24 29 29 23 25 27 25 26 25
[2] 3r29.a 8.0 8.0 8.0 8.1 8.1 8.3 8.1 8.1 7.9 7.4 8.2 8.3 8.2 8.4 8.2 24 23 24 24 11 11 23 24
0
1.5 3.1 3.2 8.0 8.1 14 8.2 8.1 8.1
[2] 3r29.b 8.3 8.3 8.3 8.5 8.5 8.7 8.5 8.5 8.3 7.7 8.6 8.6 8.6 8.8 8.6 24 23 24 24 11 11 23 24 1.5
0
3.7 3.8 8.4 8.5 14 8.6 8.5 8.4
[2] 3r2a.b 11 11 8.9 10 11 12 10 10 10 7.8 9.7 9.7 10 9.2 9.8 27 29 28 28 10 10 27 29 3.1 3.7
0
1.2 8.4 12 14 12 13 12
[2] 3r2a.d 11 10 8.7 10 11 12 10 10 10 7.6 9.6 9.6 10 9.1 9.6 28 29 28 28 10 10 27 29 3.2 3.8 1.2
0
8.2 12 14 12 13 12
[3] 3h0a.a 1.4 1.4 1.4 1.2 1.3 1.5 1.3 1.2 1.2 1.4 1.5 1.9 1.3 1.8 1.4 24 24 25 25 12 12 22 23 8.0 8.4 8.4 8.2
0
1.3 9.9 1.3 1.4 1.2
[4] 1mv9.a 1.8 1.5 1.0 0.8 1.3 3.9 0.4 0.4 0.8 0.8 0.6 1.5 0.4 1.4 0.6 26 26 26 26 14 14 24 25 8.1 8.5 12 12 1.3
0
9.8 2.5 3.7 3.1
[5] 4zo1.b 9.8 9.9 10 9.6 10 9.8 9.9 9.9 9.7 9.0 10 9.4 9.8 9.4 10 28 28 29 29 14 14 26 27 14 14 14 14 9.9 9.8
0
9.8 9.7 9.8
[6] 4j5x.d 2.0 1.7 0.9 0.7 1.6 6.8 0.7 0.7 0.9 0.9 0.5 1.4 0.6 1.4 0.5 26 27 26 26 14 14 24 25 8.2 8.6 12 12 1.3 2.5 9.8
0
2.4 1.7
[7] 4j5w.c 2.6 2.3 1.1 1.5 2.3 7.8 1.5 1.6 1.7 0.9 0.8 1.4 1.4 1.2 0.8 26 27 26 27 14 14 25 26 8.1 8.5 13 13 1.4 3.7 9.7 2.4
0
1.8
[8] 4j5w.d 2.5 2.1 0.9 1.1 2.1 7.3 1.3 1.3 1.2 0.8 0.8 1.5 1.2 1.4 0.8 26 27 26 26 14 14 24 25 8.1 8.4 12 12 1.2 3.1 9.8 1.7 1.8
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 8.7 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1fm6.u
1fm9.a
1rdt.a
1xdk.a
1xls.a
1xvp.c
2p1t.a
3fug.a
4nqa.h
5ji0.a
5mj5.a
5mk4.a
5mkj.a
5mku.a
5mmw.a
2acl.a
2acl.c
2acl.e
2acl.g
3fal.a
3fal.c
3fc6.a
3fc6.c
3r29.a
3r29.b
3r2a.b
3r2a.d
3h0a.a
1mv9.a
4zo1.b
4j5x.d
4j5w.c
4j5w.d
[1] 1fm6.u
0
1.4 1.4 2.3 1.7 2.1 2.1 2.1 2.1 1.5 1.9 2.6 2.1 2.4 1.9 25 25 25 25 13 13 24 25 8.5 8.8 11 10 2.2 2.1 9.0 2.1 2.6 2.8
[1] 1fm9.a 1.4
0
0.9 2.0 1.4 2.2 1.8 1.8 1.9 1.6 1.9 2.6 2.0 2.5 1.9 25 25 25 26 13 13 24 25 8.5 8.8 10 10 2.1 1.9 9.1 1.9 2.5 2.6
[1] 1rdt.a 1.4 0.9
0
1.2 1.2 1.5 1.4 1.3 1.3 1.3 1.3 1.8 1.4 1.7 1.4 24 24 24 24 12 12 23 24 8.0 8.4 8.8 8.7 2.0 1.3 8.7 1.3 1.3 1.2
[1] 1xdk.a 2.3 2.0 1.2
0
2.0 2.3 1.4 1.4 1.2 1.4 1.3 2.2 1.4 2.1 1.4 25 26 26 26 13 13 24 25 8.7 9.0 10 10 1.9 1.3 8.9 1.1 1.8 1.6
[1] 1xls.a 1.7 1.4 1.2 2.0
0
1.8 1.7 1.6 1.9 1.4 1.6 2.5 1.8 2.3 1.6 25 25 25 25 13 13 24 25 8.6 9.0 11 10 2.0 1.6 9.2 1.9 2.4 2.5
[1] 1xvp.c 2.1 2.2 1.5 2.3 1.8
0
2.2 2.2 2.3 1.7 1.8 2.6 2.3 2.3 1.9 25 26 26 26 13 13 24 25 8.7 9.2 12 12 2.1 4.3 9.1 6.1 6.5 6.6
[1] 2p1t.a 2.1 1.8 1.4 1.4 1.7 2.2
0
0.5 1.4 1.3 1.1 2.1 0.8 1.9 1.1 25 26 26 26 13 13 24 25 8.6 9.0 10 10 2.0 0.6 9.1 1.1 1.9 1.9
[1] 3fug.a 2.1 1.8 1.3 1.4 1.6 2.2 0.5
0
1.3 1.2 1.1 2.1 0.8 1.9 1.0 25 26 26 26 13 13 24 25 8.6 9.0 10 10 2.0 0.5 9.1 1.1 1.9 1.9
[1] 4nqa.h 2.1 1.9 1.3 1.2 1.9 2.3 1.4 1.3
0
1.3 1.5 2.3 1.4 2.1 1.5 25 26 25 26 13 13 24 25 8.4 8.8 10 10 1.9 1.3 8.9 1.2 1.9 1.7
[1] 5ji0.a 1.5 1.6 1.3 1.4 1.4 1.7 1.3 1.2 1.3
0
1.3 1.1 1.2 0.9 1.3 22 22 22 22 11 11 21 22 7.8 8.2 8.2 8.0 2.1 1.2 8.1 1.3 1.3 1.3
[1] 5mj5.a 1.9 1.9 1.3 1.3 1.6 1.8 1.1 1.1 1.5 1.3
0
1.9 0.8 1.8 0.6 25 25 26 26 13 13 24 25 8.8 9.2 9.8 9.6 2.2 1.1 9.1 1.0 1.4 1.3
[1] 5mk4.a 2.6 2.6 1.8 2.2 2.5 2.6 2.1 2.1 2.3 1.1 1.9
0
1.9 0.9 1.9 26 25 26 26 13 13 24 25 8.7 9.1 9.7 9.5 2.8 2.1 8.6 2.1 2.0 2.1
[1] 5mkj.a 2.1 2.0 1.4 1.4 1.8 2.3 0.8 0.8 1.4 1.2 0.8 1.9
0
1.8 0.8 25 26 26 26 13 13 24 25 8.7 9.1 10 10 2.0 0.7 9.1 1.1 1.8 1.8
[1] 5mku.a 2.4 2.5 1.7 2.1 2.3 2.3 1.9 1.9 2.1 0.9 1.8 0.9 1.8
0
1.8 25 25 26 26 12 12 24 25 8.8 9.2 9.4 9.2 2.6 1.9 8.6 2.0 1.8 2.0
[1] 5mmw.a 1.9 1.9 1.4 1.4 1.6 1.9 1.1 1.0 1.5 1.3 0.6 1.9 0.8 1.8
0
25 25 26 26 13 13 24 25 8.8 9.2 9.8 9.6 2.2 1.0 9.1 1.1 1.5 1.3
[2] 2acl.a 25 25 24 25 25 25 25 25 25 22 25 26 25 25 25
0
1.8 1.9 2.4 33 33 1.4 1.6 23 23 26 26 24 25 27 25 25 25
[2] 2acl.c 25 25 24 26 25 26 26 26 26 22 25 25 26 25 25 1.8
0
1.5 3.2 33 33 1.5 1.9 22 23 27 27 24 26 27 26 26 26
[2] 2acl.e 25 25 24 26 25 26 26 26 25 22 26 26 26 26 26 1.9 1.5
0
3.0 33 34 1.9 2.3 23 23 26 27 24 26 27 26 26 26
[2] 2acl.g 25 26 24 26 25 26 26 26 26 22 26 26 26 26 26 2.4 3.2 3.0
0
33 33 2.1 2.2 23 24 27 27 24 26 27 26 26 26
[2] 3fal.a 13 13 12 13 13 13 13 13 13 11 13 13 13 12 13 33 33 33 33
0
1.4 33 33 11 11 10 9.8 11 13 13 13 13 13
[2] 3fal.c 13 13 12 13 13 13 13 13 13 11 13 13 13 12 13 33 33 34 33 1.4
0
33 33 11 11 10 9.9 11 13 13 13 13 13
[2] 3fc6.a 24 24 23 24 24 24 24 24 24 21 24 24 24 24 24 1.4 1.5 1.9 2.1 33 33
0
1.1 22 22 26 26 22 24 25 24 24 24
[2] 3fc6.c 25 25 24 25 25 25 25 25 25 22 25 25 25 25 25 1.6 1.9 2.3 2.2 33 33 1.1
0
23 23 27 27 23 25 26 25 25 25
[2] 3r29.a 8.5 8.5 8.0 8.7 8.6 8.7 8.6 8.6 8.4 7.8 8.8 8.7 8.7 8.8 8.8 23 22 23 23 11 11 22 23
0
2.5 3.9 3.8 8.5 8.6 13 8.7 8.7 8.6
[2] 3r29.b 8.8 8.8 8.4 9.0 9.0 9.2 9.0 9.0 8.8 8.2 9.2 9.1 9.1 9.2 9.2 23 23 23 24 11 11 22 23 2.5
0
4.1 4.1 8.9 9.0 13 9.1 9.0 8.9
[2] 3r2a.b 11 10 8.8 10 11 12 10 10 10 8.2 9.8 9.7 10 9.4 9.8 26 27 26 27 10 10 26 27 3.9 4.1
0
1.5 8.8 12 13 12 12 12
[2] 3r2a.d 10 10 8.7 10 10 12 10 10 10 8.0 9.6 9.5 10 9.2 9.6 26 27 27 27 9.8 9.9 26 27 3.8 4.1 1.5
0
8.6 12 13 12 12 12
[3] 3h0a.a 2.2 2.1 2.0 1.9 2.0 2.1 2.0 2.0 1.9 2.1 2.2 2.8 2.0 2.6 2.2 24 24 24 24 11 11 22 23 8.5 8.9 8.8 8.6
0
2.0 9.1 2.0 2.0 2.1
[4] 1mv9.a 2.1 1.9 1.3 1.3 1.6 4.3 0.6 0.5 1.3 1.2 1.1 2.1 0.7 1.9 1.0 25 26 26 26 13 13 24 25 8.6 9.0 12 12 2.0
0
9.1 2.4 3.3 3.3
[5] 4zo1.b 9.0 9.1 8.7 8.9 9.2 9.1 9.1 9.1 8.9 8.1 9.1 8.6 9.1 8.6 9.1 27 27 27 27 13 13 25 26 13 13 13 13 9.1 9.1
0
9.1 8.9 9.0
[6] 4j5x.d 2.1 1.9 1.3 1.1 1.9 6.1 1.1 1.1 1.2 1.3 1.0 2.1 1.1 2.0 1.1 25 26 26 26 13 13 24 25 8.7 9.1 12 12 2.0 2.4 9.1
0
2.7 2.3
[7] 4j5w.c 2.6 2.5 1.3 1.8 2.4 6.5 1.9 1.9 1.9 1.3 1.4 2.0 1.8 1.8 1.5 25 26 26 26 13 13 24 25 8.7 9.0 12 12 2.0 3.3 8.9 2.7
0
2.4
[8] 4j5w.d 2.8 2.6 1.2 1.6 2.5 6.6 1.9 1.9 1.7 1.3 1.3 2.1 1.8 2.0 1.3 25 26 26 26 13 13 24 25 8.6 8.9 12 12 2.1 3.3 9.0 2.3 2.4
0
[Binding site full-atom RMSD matrix]







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