If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

ROCO4_DICDI_1009_1292

Probable serine/threonine-protein kinase roco4 [Protein kinase superfamily. TKL Ser/Thr protein kinase family. ROCO subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (ROCO4_DICDI):D: Protein kinase (1032:1038, 1040, 1053, 1055, 1091, 1105:1112, 1156, 1158, 1159, 1161, 1176, 1177)1032:1038, 1040, 1053, 1055, 1091, 1105:1112, 1156, 1158, 1159, 1161, 1176, 1177

Full PDB list

4f0f, 4f0g, 4f1m, 4f1o, 4f1t, 4yzm, 4yzn (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
I
1
0
3
2
G
1
0
3
3
K
1
0
3
4
G
1
0
3
5
G
1
0
3
6
V
1
0
4
0
A
1
0
5
3
K
1
0
5
5
M
1
1
0
5
E
1
1
0
6
F
1
1
0
7
V
1
1
0
8
P
1
1
0
9
G
1
1
1
1
R
1
1
5
6
P
1
1
5
8
F
1
1
6
1
A
1
1
7
6
D
1
1
7
7
[1]4f0g.a none . . . . . . . . . . . . . . . . . . .
[1]4f1m.a acp31 . . . . . . . . . . . . . . . . . . .
[1]4f1t.a h5222 . . . . . . . . . . . . . . . . . . .
[1]4yzn.a 4k532 . . . . . . . . . . L . . . . . L . .
[2]4yzm.a 4k442 . . . . . . . . . . L . . . . . L . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
I
1
0
3
2
G
1
0
3
3
K
1
0
3
4
G
1
0
3
5
G
1
0
3
6
F
1
0
3
7
G
1
0
3
8
V
1
0
4
0
A
1
0
5
3
K
1
0
5
5
V
1
0
9
1
M
1
1
0
5
E
1
1
0
6
F
1
1
0
7
V
1
1
0
8
P
1
1
0
9
C
1
1
1
0
G
1
1
1
1
D
1
1
1
2
R
1
1
5
6
P
1
1
5
8
N
1
1
5
9
F
1
1
6
1
A
1
1
7
6
D
1
1
7
7
[1]4f0g.a . . . . . . . . . . . . . . . . . . . . . . . . *
[1]4f1m.a . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4f1t.a . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4yzn.a . . * . . . . * . . . . . L . . . . . . . . L . *
[2]4yzm.a . . * * . . . * . . . . . L . . . . . . . . L . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4f0g.a is apo
4f1m.a:acp
4f1t.a:h52
4yzn.a:4k5
4yzm.a:4k4
[1] 4f0g.a
-
0.3 0.3 1.0 2.6
[1] 4f1m.a -
0
0.2 0.6 1.0
[1] 4f1t.a - 0
0
0.7 1.3
[1] 4yzn.a - 2.2 2.5
0
1.3
[2] 4yzm.a - 7.8 6.3 0.3
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (2 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4f0g.a
4f1m.a
4f1t.a
4yzn.a
4yzm.a
[1] 4f0g.a
0
.08 .06 .18 .40
[1] 4f1m.a .08
0
.03 .20 .34
[1] 4f1t.a .06 .03
0
.20 .36
[1] 4yzn.a .18 .20 .20
0
.26
[2] 4yzm.a .40 .34 .36 .26
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4f0g.a
4f1m.a
4f1t.a
4yzn.a
4yzm.a
[1] 4f0g.a
0
0.8 0.7 1.5 2.5
[1] 4f1m.a 0.8
0
1.0 1.2 2.2
[1] 4f1t.a 0.7 1.0
0
1.7 2.6
[1] 4yzn.a 1.5 1.2 1.7
0
1.6
[2] 4yzm.a 2.5 2.2 2.6 1.6
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 1.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4f0g.a
4f1m.a
4f1t.a
4yzn.a
4yzm.a
[1] 4f0g.a
0
0.9 0.9 1.7 2.6
[1] 4f1m.a 0.9
0
1.4 1.5 2.3
[1] 4f1t.a 0.9 1.4
0
2.0 2.4
[1] 4yzn.a 1.7 1.5 2.0
0
1.6
[2] 4yzm.a 2.6 2.3 2.4 1.6
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...