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PDPK1_HUMAN_53_359_PIFsite

3-phosphoinositide-dependent protein kinase 1 [Protein kinase superfamily. AGC Ser/Thr protein kinase family. PDPK1 subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (PDPK1_HUMAN):D: Protein kinase (111, 113, 115, 118, 119, 124, 127, 128, 130, 131, 135, 144:150, 155:157)
R: PIF-pocket (113, 115, 118, 119, 124, 127, 128, 130, 131, 135, 144:150, 155:157)
73:77
73:77, 111, 113, 115, 118, 119, 124, 127, 128, 130, 131, 135, 144:150, 155:157

Full PDB list

1h1w, 1oky, 1okz, 1uu3, 1uu7, 1uu8, 1uu9, 1uvr, 1z5m, 2biy, 2pe0, 2pe1, 2pe2, 2r7b, 2xch, 2xck, 3h9o, 3hrc, 3hrf, 3ion, 3iop, 3nax, 3nay, 3nun, 3nus, 3nuu, 3nuy, 3orx, 3orz, 3otu, 3pwy, 3qc4, 3qcq, 3qcs, 3qcx, 3qcy, 3qd0, 3qd3, 3qd4, 3rcj, 3rwp, 3rwq, 3sc1, 4a06, 4a07, 4aw0, 4aw1, 4ct1, 4ct2, 4rqk, 4rqv, 4rrv, 4xx9, 5ack, 5hkm, 5hng, 5ho7, 5ho8, 5lvl, 5lvm, 5lvn, 5lvo, 5lvp, 5mrd (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
R
7
5
K
7
6
K
7
7
K
1
1
1
K
1
1
5
I
1
1
8
I
1
1
9
V
1
2
4
V
1
2
7
T
1
2
8
E
1
3
0
R
1
3
1
S
1
3
5
K
1
4
4
L
1
4
5
Y
1
4
6
F
1
4
7
T
1
4
8
F
1
4
9
Q
1
5
0
L
1
5
5
Y
1
5
6
F
1
5
7
[1]1uu3.a none . . . . . . . . . . . . . . . . . . . . . . .
[1]3hrf.a p4720 . . . . . . . . . . . . . . . . . . . . . . .
[1]3orx.a 1f816 . . . . . . . . . . . . . . . . . C . . . . .
[1]3orz.b 2a219 . . . . . . . . . . . . . . . . . C . . . . .
[1]3otu.a j3023 - - . . . . . . . . . . . . . . . C . . . . .
[1]4a06.a a0619 . . . . . . . . . . . . . . . . . . . . . . .
[1]4a07.a az724 . . . . . . . . . . . . . . . . . . . . . . .
[1]4aw0.a mjf24 . . . . . . . . . . . . . . . . . . . . . . .
[1]4aw1.a 21o27 . . . . . . . . . . . . . . . . . . . . . . .
[1]4ct1.a 31s26 - . . . . V H I . Q . K . . . . . C . . . . L
[1]4ct2.a none . . . . . V . - . Q . K . . . . . C . . . . L
[1]4rqk.a r1s23 . . . . . . . . . . . . . . . . . . . . . . .
[1]4rqv.a r2s23 . . . . . . . . . . . . . . . . . . . . . . .
[1]4rrv.a MFRDFDYIA73 - . . . . . . . . . . . . . . . . . . . . . .
[1]4xx9.a rf425 . . . . . . . . . . . . . . . . . . . . . . .
[1]5ack.a svq26 . . . . . . . . . . . . . . . . . . . . . . .
[1]5lvo.a 78w22 . . . . . . . . . . . . . . . . . . . . . . .
[1]5lvp.b FPQFsepYSA64 . . . . . . . . . . . . . . . . . . . . . . .
[1]5lvp.d FPQFsepYS62 . . . . . . . . . . . . . . . . . . . . . . .
[1]5mrd.a s2623 - S . . . V N I . Q . K . . . . . C . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
Q
7
3
P
7
4
R
7
5
K
7
6
K
7
7
K
1
1
1
L
1
1
3
K
1
1
5
I
1
1
8
I
1
1
9
V
1
2
4
V
1
2
7
T
1
2
8
E
1
3
0
R
1
3
1
S
1
3
5
K
1
4
4
L
1
4
5
Y
1
4
6
F
1
4
7
T
1
4
8
F
1
4
9
Q
1
5
0
L
1
5
5
Y
1
5
6
F
1
5
7
[1]1uu3.a . . . * . . . . . . . . . . * . . . . . . . . . . *
[1]3hrf.a - - . * . . . . * . . . . . * . . . . . . . . . . *
[1]3orx.a - - . * . . . . . . . . . . * . . . . . C . . . . *
[1]3orz.b . . . * . . * . . . . . . . . . . . . . C . . * . *
[1]3otu.a - - - - . . . . . . . . . . . . . . . . C . . . . *
[1]4a06.a - - . * . . . . . . . . . . * . . . . . . . . . . *
[1]4a07.a - - . * . . . . . . . . . . * . . . . . . . . . . *
[1]4aw0.a - - . * . . . . . . . . . . * . . . . . . . . . . *
[1]4aw1.a - . . * . . . . . . . . * . * . . . . . . . . . . *
[1]4ct1.a - - - . . . V . V H I . Q . K . . . . . C . . . . L
[1]4ct2.a - - . . . . V . V . - . Q . K . . . . . C . . . . L
[1]4rqk.a - . . . . . . . * . . . . . * . . . . . . . . . . *
[1]4rqv.a . . . * . . . . . . . . . . * . . . . . . . . . . *
[1]4rrv.a - - - . . . . . * . . . . . . . . . . . . . . . . *
[1]4xx9.a . . . * . . . . * . . . . . * . . . . . . . . . . *
[1]5ack.a . . . . . . . . . . . . . . . . . . . . . . . . . *
[1]5lvo.a . . . . . . . . . . . . . . . . . . . . . . . . . *
[1]5lvp.b - . . . . . . . . . . . . . . . . . . . . . . . . *
[1]5lvp.d - . . . . . . . . . . . . . * . . . . . . . . . . *
[1]5mrd.a - - - S . . V . V N I . Q . K . . . . . C . . . . *

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1uu3.a is apo
3hrf.a:p47
3orx.a:1f8
3orz.b:2a2
3otu.a:j30
4a06.a:a06
4a07.a:az7
4aw0.a:mjf
4aw1.a:21o
4ct1.a:31s
4ct2.a is apo
4rqk.a:r1s
4rqv.a:r2s
4rrv.a:MFRDFDYIA
4xx9.a:rf4
5ack.a:svq
5lvo.a:78w
5lvp.b:FPQFsepYSA
5lvp.d:FPQFsepYS
5mrd.a:s26
[1] 1uu3.a
-
1.8 0.9 1.0 1.0 1.0 1.6 1.9 1.9 3.2 - 0.9 1.3 2.7 1.3 0.9 1.2 2.6 2.6 0.5
[1] 3hrf.a -
0
0.4 1.6 1.1 0.2 0.3 0.1 0 2.3 - 1.0 0.6 2.1 0.1 2.0 0.1 1.6 1.6 2.3
[1] 3orx.a - 2.1
0.6
1.8 1.3 1.7 2.3 1.5 1.5 3.8 - 1.6 2.3 2.0 1.8 1.9 1.9 2.3 2.2 1.9
[1] 3orz.b - 1.8 0.7
0.5
0.7 1.5 2.4 1.4 1.6 3.9 - 1.4 1.8 2.2 1.6 1.4 1.8 2.8 2.6 1.2
[1] 3otu.a - 1.3 0.4 0.4
0.4
1.3 1.4 1.3 1.4 2.8 - 1.1 2.2 2.1 1.6 1.1 2.0 1.2 1.3 0.6
[1] 4a06.a - 0.2 0.4 0.4 0.6
0.1
0.4 0 0 2.5 - 0.5 0.3 1.7 0.3 2.0 0.2 1.0 1.0 1.7
[1] 4a07.a - 0.2 0.5 0.6 0.5 0
0.1
0.1 0.2 2.6 - 0.1 0.2 0.9 0.2 1.2 0.1 1.3 1.1 0.7
[1] 4aw0.a - 0.2 0.3 0.8 0.6 0 0.2
0
0.1 2.4 - 0.6 0.4 1.9 0.3 2.1 0.2 1.9 1.9 1.6
[1] 4aw1.a - 0.2 0.4 0.8 0.8 0 0.5 0
0
2.3 - 0.5 1.0 2.1 0.4 2.1 0.4 1.6 1.7 2.0
[1] 4ct1.a - 0.1 0.5 0.8 0.6 0.1 0.2 0.1 0.1
0
- 0.2 0.4 0.5 0 0.9 0.1 0.5 0.4 0.5
[1] 4ct2.a - 1.3 1.0 0.4 0.8 0.5 0.7 1.2 1.0 1.2
-
0.6 0.8 1.3 1.0 0.3 0.4 0.8 0.8 0.3
[1] 4rqk.a - 0.6 0.7 0.9 0.6 0.1 0.3 1.0 0.8 2.4 -
0
0.8 1.7 0.5 0.4 0.3 1.7 1.6 0.4
[1] 4rqv.a - 0.1 0.4 0.8 0.5 0 0.1 0 0.1 2.7 - 0.5
0.2
1.1 0.2 1.7 0 0.9 0.8 1.5
[1] 4rrv.a - 0.3 0.2 1.2 0.6 0.2 0.3 0 0.1 2.6 - 0 0.8
0
0.3 0.5 0.4 0.2 0 0.3
[1] 4xx9.a - 0.1 0.6 1.3 0.8 0.1 0.1 0.4 0.2 2.1 - 0.9 0.5 1.9
0
2.2 0.2 1.5 1.4 1.8
[1] 5ack.a - 0.2 0.3 0.4 0.6 0.1 0.2 0 0 2.5 - 0 0.2 0.2 0.4
0
0.2 0.1 0 0
[1] 5lvo.a - 0.2 0.3 0.7 0.6 0 0.1 0 0 2.6 - 0 0 0.3 0.2 0.2
0
0 0.1 0.4
[1] 5lvp.b - 0.3 0.4 1.1 0.8 0.2 0.6 0 0 2.5 - 0.1 0.6 0.3 0.3 1.2 0.2
0
0.1 1.1
[1] 5lvp.d - 0.6 0.4 1.1 0.7 0.3 0.7 0.1 0.2 2.8 - 0.2 1.2 0.9 0.7 1.7 0.6 0.2
0
1.1
[1] 5mrd.a - 1.3 0.4 0.5 0.2 1.4 1.7 1.2 1.2 2.7 - 0.8 2.1 1.5 1.4 0.9 1.6 0.9 0.8
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1uu3.a
3hrf.a
3orx.a
3orz.b
3otu.a
4a06.a
4a07.a
4aw0.a
4aw1.a
4ct1.a
4ct2.a
4rqk.a
4rqv.a
4rrv.a
4xx9.a
5ack.a
5lvo.a
5lvp.b
5lvp.d
5mrd.a
[1] 1uu3.a
0
.10 .13 .15 .12 .06 .06 .07 .10 .20 .20 .09 .06 .14 .09 .15 .13 .13 .11 .13
[1] 3hrf.a .10
0
.13 .18 .18 .08 .09 .08 .09 .20 .21 .07 .07 .15 .05 .17 .16 .11 .13 .18
[1] 3orx.a .13 .13
0
.11 .16 .11 .10 .15 .15 .22 .21 .10 .10 .15 .11 .18 .16 .12 .13 .16
[1] 3orz.b .15 .18 .11
0
.11 .15 .12 .18 .18 .21 .23 .16 .15 .15 .18 .14 .13 .15 .20 .13
[1] 3otu.a .12 .18 .16 .11
0
.12 .10 .16 .17 .15 .15 .12 .12 .06 .16 .06 .05 .08 .12 .07
[1] 4a06.a .06 .08 .11 .15 .12
0
.05 .08 .09 .18 .16 .07 .04 .13 .05 .11 .11 .12 .13 .14
[1] 4a07.a .06 .09 .10 .12 .10 .05
0
.08 .09 .15 .15 .05 .04 .10 .08 .09 .08 .09 .11 .10
[1] 4aw0.a .07 .08 .15 .18 .16 .08 .08
0
.04 .19 .20 .10 .09 .16 .10 .16 .15 .14 .14 .15
[1] 4aw1.a .10 .09 .15 .18 .17 .09 .09 .04
0
.20 .19 .11 .09 .18 .12 .16 .16 .14 .12 .16
[1] 4ct1.a .20 .20 .22 .21 .15 .18 .15 .19 .20
0
.08 .15 .17 .15 .18 .14 .13 .13 .18 .14
[1] 4ct2.a .20 .21 .21 .23 .15 .16 .15 .20 .19 .08
0
.15 .16 .16 .19 .15 .14 .14 .16 .16
[1] 4rqk.a .09 .07 .10 .16 .12 .07 .05 .10 .11 .15 .15
0
.04 .09 .06 .11 .10 .08 .08 .12
[1] 4rqv.a .06 .07 .10 .15 .12 .04 .04 .09 .09 .17 .16 .04
0
.10 .05 .11 .09 .09 .10 .11
[1] 4rrv.a .14 .15 .15 .15 .06 .13 .10 .16 .18 .15 .16 .09 .10
0
.13 .04 .02 .05 .10 .06
[1] 4xx9.a .09 .05 .11 .18 .16 .05 .08 .10 .12 .18 .19 .06 .05 .13
0
.15 .14 .12 .13 .16
[1] 5ack.a .15 .17 .18 .14 .06 .11 .09 .16 .16 .14 .15 .11 .11 .04 .15
0
.02 .08 .13 .06
[1] 5lvo.a .13 .16 .16 .13 .05 .11 .08 .15 .16 .13 .14 .10 .09 .02 .14 .02
0
.06 .11 .04
[1] 5lvp.b .13 .11 .12 .15 .08 .12 .09 .14 .14 .13 .14 .08 .09 .05 .12 .08 .06
0
.05 .06
[1] 5lvp.d .11 .13 .13 .20 .12 .13 .11 .14 .12 .18 .16 .08 .10 .10 .13 .13 .11 .05
0
.09
[1] 5mrd.a .13 .18 .16 .13 .07 .14 .10 .15 .16 .14 .16 .12 .11 .06 .16 .06 .04 .06 .09
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1uu3.a
3hrf.a
3orx.a
3orz.b
3otu.a
4a06.a
4a07.a
4aw0.a
4aw1.a
4ct1.a
4ct2.a
4rqk.a
4rqv.a
4rrv.a
4xx9.a
5ack.a
5lvo.a
5lvp.b
5lvp.d
5mrd.a
[1] 1uu3.a
0
0.5 0.8 1.2 0.6 0.3 0.2 0.7 1.1 0.4 1.6 0.3 0.2 0.3 0.3 0.4 0.3 0.8 0.9 0.5
[1] 3hrf.a 0.5
0
0.9 0.5 0.7 0.2 0.3 0.5 0.6 0.3 1.6 0.5 0.5 0.3 0.4 0.6 0.6 0.8 0.8 0.5
[1] 3orx.a 0.8 0.9
0
0.8 1.2 0.8 0.8 0.9 0.9 0.8 1.7 0.8 0.8 0.8 0.8 0.9 0.8 0.7 0.7 0.8
[1] 3orz.b 1.2 0.5 0.8
0
0.7 0.4 0.5 0.7 1.1 0.5 1.6 0.8 1.2 0.5 1.2 1.3 1.1 1.1 1.1 0.5
[1] 3otu.a 0.6 0.7 1.2 0.7
0
0.6 0.7 0.8 1.0 0.8 1.7 0.7 0.6 0.7 0.7 0.6 0.7 1.1 1.2 0.7
[1] 4a06.a 0.3 0.2 0.8 0.4 0.6
0
0.2 0.5 0.7 0.3 1.5 0.2 0.3 0.3 0.3 0.4 0.4 0.8 0.8 0.4
[1] 4a07.a 0.2 0.3 0.8 0.5 0.7 0.2
0
0.5 0.6 0.3 1.5 0.2 0.2 0.2 0.2 0.3 0.2 0.7 0.8 0.4
[1] 4aw0.a 0.7 0.5 0.9 0.7 0.8 0.5 0.5
0
0.3 0.5 1.6 0.6 0.7 0.4 0.6 0.7 0.6 0.6 0.6 0.7
[1] 4aw1.a 1.1 0.6 0.9 1.1 1.0 0.7 0.6 0.3
0
0.6 1.6 1.0 1.0 0.6 1.0 1.1 1.0 0.8 0.7 0.7
[1] 4ct1.a 0.4 0.3 0.8 0.5 0.8 0.3 0.3 0.5 0.6
0
1.6 0.2 0.3 0.3 0.2 0.4 0.3 0.7 0.8 0.5
[1] 4ct2.a 1.6 1.6 1.7 1.6 1.7 1.5 1.5 1.6 1.6 1.6
0
1.6 1.6 1.6 1.6 1.6 1.6 1.6 1.7 1.7
[1] 4rqk.a 0.3 0.5 0.8 0.8 0.7 0.2 0.2 0.6 1.0 0.2 1.6
0
0.1 0.2 0.2 0.3 0.2 0.7 0.9 0.4
[1] 4rqv.a 0.2 0.5 0.8 1.2 0.6 0.3 0.2 0.7 1.0 0.3 1.6 0.1
0
0.2 0.2 0.3 0.2 0.8 1.0 0.4
[1] 4rrv.a 0.3 0.3 0.8 0.5 0.7 0.3 0.2 0.4 0.6 0.3 1.6 0.2 0.2
0
0.3 0.3 0.2 0.7 0.8 0.5
[1] 4xx9.a 0.3 0.4 0.8 1.2 0.7 0.3 0.2 0.6 1.0 0.2 1.6 0.2 0.2 0.3
0
0.4 0.3 0.8 1.0 0.4
[1] 5ack.a 0.4 0.6 0.9 1.3 0.6 0.4 0.3 0.7 1.1 0.4 1.6 0.3 0.3 0.3 0.4
0
0.2 0.8 1.0 0.5
[1] 5lvo.a 0.3 0.6 0.8 1.1 0.7 0.4 0.2 0.6 1.0 0.3 1.6 0.2 0.2 0.2 0.3 0.2
0
0.7 0.9 0.5
[1] 5lvp.b 0.8 0.8 0.7 1.1 1.1 0.8 0.7 0.6 0.8 0.7 1.6 0.7 0.8 0.7 0.8 0.8 0.7
0
0.3 0.8
[1] 5lvp.d 0.9 0.8 0.7 1.1 1.2 0.8 0.8 0.6 0.7 0.8 1.7 0.9 1.0 0.8 1.0 1.0 0.9 0.3
0
0.9
[1] 5mrd.a 0.5 0.5 0.8 0.5 0.7 0.4 0.4 0.7 0.7 0.5 1.7 0.4 0.4 0.5 0.4 0.5 0.5 0.8 0.9
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1uu3.a
3hrf.a
3orx.a
3orz.b
3otu.a
4a06.a
4a07.a
4aw0.a
4aw1.a
4ct1.a
4ct2.a
4rqk.a
4rqv.a
4rrv.a
4xx9.a
5ack.a
5lvo.a
5lvp.b
5lvp.d
5mrd.a
[1] 1uu3.a
0
0.9 1.2 1.6 1.7 1.0 0.8 1.0 1.2 0.9 1.4 0.7 0.8 0.8 0.8 1.3 0.6 1.2 1.4 1.4
[1] 3hrf.a 0.9
0
1.3 1.1 1.7 0.9 0.8 0.8 1.0 0.8 1.4 0.8 0.8 0.7 0.6 1.4 0.8 1.1 1.2 1.4
[1] 3orx.a 1.2 1.3
0
1.0 2.1 1.3 1.1 1.2 1.1 1.1 1.7 1.3 1.4 1.2 1.3 1.9 1.1 1.4 1.5 1.8
[1] 3orz.b 1.6 1.1 1.0
0
0.9 1.0 0.9 1.2 1.2 1.0 1.5 1.2 1.7 1.1 1.7 1.4 1.2 1.3 1.4 1.0
[1] 3otu.a 1.7 1.7 2.1 0.9
0
1.6 1.6 1.9 2.0 1.2 1.7 1.6 1.8 1.7 1.8 1.2 1.7 1.6 1.6 1.2
[1] 4a06.a 1.0 0.9 1.3 1.0 1.6
0
0.7 0.9 1.1 0.6 1.3 0.9 0.8 0.9 0.8 1.1 0.8 1.1 1.2 1.2
[1] 4a07.a 0.8 0.8 1.1 0.9 1.6 0.7
0
0.8 1.0 0.7 1.4 0.7 0.8 0.7 0.8 1.2 0.6 1.1 1.2 1.3
[1] 4aw0.a 1.0 0.8 1.2 1.2 1.9 0.9 0.8
0
0.5 0.8 1.4 0.9 0.9 0.7 0.9 1.4 0.7 1.0 1.1 1.5
[1] 4aw1.a 1.2 1.0 1.1 1.2 2.0 1.1 1.0 0.5
0
0.9 1.4 1.1 1.2 1.0 1.1 1.7 1.0 1.2 1.2 1.7
[1] 4ct1.a 0.9 0.8 1.1 1.0 1.2 0.6 0.7 0.8 0.9
0
1.4 0.8 0.7 0.7 0.7 0.7 0.7 1.0 1.1 0.8
[1] 4ct2.a 1.4 1.4 1.7 1.5 1.7 1.3 1.4 1.4 1.4 1.4
0
1.3 1.3 1.3 1.3 1.4 1.3 1.5 1.5 1.5
[1] 4rqk.a 0.7 0.8 1.3 1.2 1.6 0.9 0.7 0.9 1.1 0.8 1.3
0
0.9 0.6 0.6 1.2 0.5 1.2 1.4 1.3
[1] 4rqv.a 0.8 0.8 1.4 1.7 1.8 0.8 0.8 0.9 1.2 0.7 1.3 0.9
0
0.7 0.7 1.3 0.6 1.2 1.4 1.3
[1] 4rrv.a 0.8 0.7 1.2 1.1 1.7 0.9 0.7 0.7 1.0 0.7 1.3 0.6 0.7
0
0.6 1.3 0.5 1.1 1.2 1.4
[1] 4xx9.a 0.8 0.6 1.3 1.7 1.8 0.8 0.8 0.9 1.1 0.7 1.3 0.6 0.7 0.6
0
1.3 0.6 1.3 1.4 1.4
[1] 5ack.a 1.3 1.4 1.9 1.4 1.2 1.1 1.2 1.4 1.7 0.7 1.4 1.2 1.3 1.3 1.3
0
1.2 1.2 1.3 0.7
[1] 5lvo.a 0.6 0.8 1.1 1.2 1.7 0.8 0.6 0.7 1.0 0.7 1.3 0.5 0.6 0.5 0.6 1.2
0
1.1 1.3 1.4
[1] 5lvp.b 1.2 1.1 1.4 1.3 1.6 1.1 1.1 1.0 1.2 1.0 1.5 1.2 1.2 1.1 1.3 1.2 1.1
0
0.4 1.2
[1] 5lvp.d 1.4 1.2 1.5 1.4 1.6 1.2 1.2 1.1 1.2 1.1 1.5 1.4 1.4 1.2 1.4 1.3 1.3 0.4
0
1.2
[1] 5mrd.a 1.4 1.4 1.8 1.0 1.2 1.2 1.3 1.5 1.7 0.8 1.5 1.3 1.3 1.4 1.4 0.7 1.4 1.2 1.2
0
[Binding site full-atom RMSD matrix]







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