If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

OPSD_TODPA_3_363

Rhodopsin [G-protein coupled receptor 1 family. Opsin subfamily]

Composition of the binding site

Protein chains monomer
A1 (OPSD_TODPA):83, 87, 111, 112, 115, 116, 119, 120, 123, 177, 185:188, 204, 205, 209, 270, 274, 277, 278, 301, 30583, 87, 111, 112, 115, 116, 119, 120, 123, 177, 185:188, 204, 205, 209, 270, 274, 277, 278, 301, 305

Full PDB list

2z73, 2ziy, 3aym, 3ayn, 4ww3 (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
F
8
3
Y
1
1
1
G
1
1
5
G
1
1
6
G
1
1
9
F
1
2
0
I
1
2
3
N
1
8
5
C
1
8
6
S
1
8
7
F
1
8
8
M
2
0
4
F
2
0
5
F
2
0
9
F
2
7
0
W
2
7
4
A
2
7
8
V
3
0
1
K
3
0
5
[1]3aym.a ret20 . . . . . . . . . . . . . . . . . . *

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
F
8
3
N
8
7
Y
1
1
1
G
1
1
2
G
1
1
5
G
1
1
6
G
1
1
9
F
1
2
0
I
1
2
3
Y
1
7
7
N
1
8
5
C
1
8
6
S
1
8
7
F
1
8
8
M
2
0
4
F
2
0
5
F
2
0
9
F
2
7
0
W
2
7
4
Y
2
7
7
A
2
7
8
V
3
0
1
K
3
0
5
[1]3aym.a . . . . . . . . . . . . . . . . . . . . . . *

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...