OPSD_HUMAN_1_348_TM

Rhodopsin [G-protein coupled receptor 1 family. Opsin subfamily]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer[show domain annotation]
 • A1 (OPSD_HUMAN):R: Retinal chromophore binding (113,117,118,121,122)
R: Retinal chromophore binding (207,208,212)
186:189,191,204,261,265,268,269,272,292,295,296
113,117,118,121,122,186:189,191,204,207,208,212,261,265,268,269,272,292,295,296

Full PDB list

1f88,1gzm,1hzx,1l9h,1u19,2g87,2hpy,2j4y,2ped,2x72,3c9l,3c9m,3cap,3dqb,3oax,3pqr,3pxo,4a4m,4bey,4bez,4j4q,4pxf,4x1h,4zwj,5dys,5en0 (redundant pocketome entry)

Contact map

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ligand
A1
E
1
1
3
A
1
1
7
T
1
1
8
G
1
2
1
E
1
2
2
S
1
8
6
C
1
8
7
G
1
8
8
I
1
8
9
Y
1
9
1
V
2
0
4
M
2
0
7
F
2
0
8
F
2
1
2
F
2
6
1
W
2
6
5
Y
2
6
8
A
2
6
9
A
2
7
2
A
2
9
2
A
2
9
5
K
2
9
6
[2]3oax.a ret 20 . . . . . . . . . . . . . . . . . . . . . *
[1]4j4q.a bog 20 . . . . . . . . . . . . . . . . . . . . . .
[1]4x1h.a bng 21 . . . . . . . . . . . . . . . . . . . . . .
[1]3cap.a none . . . . . . . . . . . . . . . . . . . . . .
[1]4bez.a none . . . . . . . . . . . . . . . . . . . . . .
[1]4zwj.a none Q . . . . . . . . . . . . . . . . . . . . .
[1]2x72.a ret 21 Q . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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