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OPRX_HUMAN_40_339

Nociceptin receptor [G-protein coupled receptor 1 family]

Composition of the binding site

Protein chains monomer
A1 (OPRX_HUMAN):107, 110, 111, 116, 126, 127, 130, 131, 134, 135, 200:202, 219, 223, 276, 279, 280, 283, 305, 309107, 110, 111, 116, 126, 127, 130, 131, 134, 135, 200:202, 219, 223, 276, 279, 280, 283, 305, 309

Full PDB list

4ea3, 5dhg, 5dhh

Pocket contact map

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PDB.ch
   
ligand
A1
Q
1
0
7
D
1
1
0
I
1
1
1
W
1
1
6
V
1
2
6
I
1
2
7
D
1
3
0
Y
1
3
1
M
1
3
4
F
1
3
5
C
2
0
0
L
2
0
1
V
2
0
2
I
2
1
9
S
2
2
3
W
2
7
6
V
2
7
9
Q
2
8
0
V
2
8
3
T
3
0
5
Y
3
0
9
[1]4ea3.a 0nn32 . . . . . . . . . . . . . . . . . . . . .
[1]5dhg.a dgv32 . . . . . . . . . . . . . . . . . . . . .
[1]5dhh.a dgw28 . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
Q
1
0
7
D
1
1
0
I
1
1
1
W
1
1
6
V
1
2
6
I
1
2
7
D
1
3
0
Y
1
3
1
M
1
3
4
F
1
3
5
C
2
0
0
L
2
0
1
V
2
0
2
I
2
1
9
S
2
2
3
W
2
7
6
V
2
7
9
Q
2
8
0
V
2
8
3
T
3
0
5
Y
3
0
9
[1]4ea3.a . . . . . . . . . . . . . . . . . . . . .
[1]5dhg.a . . . . . . . . . . . . . . . . . . . . .
[1]5dhh.a . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4ea3.a:0nn
5dhg.a:dgv
5dhh.a:dgw
[1] 4ea3.a
0
0.2 0.2
[1] 5dhg.a 0.1
0.1
0.2
[1] 5dhh.a 0 0.1
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4ea3.a
5dhg.a
5dhh.a
[1] 4ea3.a
0
0 .01
[1] 5dhg.a 0
0
.01
[1] 5dhh.a .01 .01
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4ea3.a
5dhg.a
5dhh.a
[1] 4ea3.a
0
0.2 0.4
[1] 5dhg.a 0.2
0
0.3
[1] 5dhh.a 0.4 0.3
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4ea3.a
5dhg.a
5dhh.a
[1] 4ea3.a
0
0.6 0.7
[1] 5dhg.a 0.6
0
0.4
[1] 5dhh.a 0.7 0.4
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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