If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

LCN5_RAT_23_186

Epididymal-specific lipocalin-5 [Calycin superfamily. Lipocalin family]

Composition of the binding site

Protein chains monomer
A1 (LCN5_RAT):30, 33, 37, 61, 63, 70, 72, 89, 100, 102, 107, 109, 111, 120, 122, 124, 137, 13930, 33, 37, 61, 63, 70, 72, 89, 100, 102, 107, 109, 111, 120, 122, 124, 137, 139

Full PDB list

1epa, 1epb

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
I
3
0
F
3
3
W
3
7
L
7
2
V
1
0
0
R
1
0
2
K
1
0
7
V
1
0
9
V
1
1
1
A
1
2
0
I
1
2
2
I
1
2
4
K
1
3
7
Y
1
3
9
[1]1epa.a none . . . . . . . . . . . . . .
[1]1epb.b rea22 . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
I
3
0
F
3
3
W
3
7
M
6
1
V
6
3
L
7
0
L
7
2
A
8
9
V
1
0
0
R
1
0
2
K
1
0
7
V
1
0
9
V
1
1
1
A
1
2
0
I
1
2
2
I
1
2
4
K
1
3
7
Y
1
3
9
[1]1epa.a . . . . . . . . . . . . . . . . . .
[1]1epb.b . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1epa.a is apo
1epb.b:rea
[1] 1epa.a
-
1.4
[1] 1epb.b -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1epa.a
1epb.b
[1] 1epa.a
0
.08
[1] 1epb.b .08
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.8 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1epa.a
1epb.b
[1] 1epa.a
0
0.6
[1] 1epb.b 0.6
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1epa.a
1epb.b
[1] 1epa.a
0
1.6
[1] 1epb.b 1.6
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...