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KS6A1_HUMAN_33_353

Ribosomal protein S6 kinase alpha-1 [Protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (KS6A1_HUMAN):D: Protein kinase 1 (68:73, 76, 92, 94, 125, 141:145, 147, 148, 189, 191, 192, 194, 204, 205)68:73, 76, 92, 94, 125, 141:145, 147, 148, 189, 191, 192, 194, 204, 205

Full PDB list

2z7q, 2z7r, 2z7s

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
L
6
8
G
6
9
Q
7
0
G
7
1
S
7
2
V
7
6
A
9
2
K
9
4
V
1
2
5
L
1
4
1
D
1
4
2
F
1
4
3
L
1
4
4
R
1
4
5
G
1
4
7
D
1
4
8
K
1
8
9
E
1
9
1
N
1
9
2
L
1
9
4
T
2
0
4
D
2
0
5
[1]2z7q.a acp,mg32 . . . . . . . . . . . . . . . . . . . . . .
[1]2z7r.a stu35 . . . . . . . . . . . . . . . . . . . . . .
[1]2z7s.a p0127 . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
L
6
8
G
6
9
Q
7
0
G
7
1
S
7
2
F
7
3
V
7
6
A
9
2
K
9
4
V
1
2
5
L
1
4
1
D
1
4
2
F
1
4
3
L
1
4
4
R
1
4
5
G
1
4
7
D
1
4
8
K
1
8
9
E
1
9
1
N
1
9
2
L
1
9
4
T
2
0
4
D
2
0
5
[1]2z7q.a . . . . . . . . . . . . . . . . . . . . . . .
[1]2z7r.a . . . . . . . . . . . . . . . . . . . . . . .
[1]2z7s.a . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
2z7q.a:acp,mg
2z7r.a:stu
2z7s.a:p01
[1] 2z7q.a
0.1
1.2 0
[1] 2z7r.a 0.7
0.2
0.8
[1] 2z7s.a 0.5 1.0
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
2z7q.a
2z7r.a
2z7s.a
[1] 2z7q.a
0
.09 .04
[1] 2z7r.a .09
0
.10
[1] 2z7s.a .04 .10
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.0 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2z7q.a
2z7r.a
2z7s.a
[1] 2z7q.a
0
0.7 0.8
[1] 2z7r.a 0.7
0
1.0
[1] 2z7s.a 0.8 1.0
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.7 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2z7q.a
2z7r.a
2z7s.a
[1] 2z7q.a
0
1.1 1.6
[1] 2z7r.a 1.1
0
1.4
[1] 2z7s.a 1.6 1.4
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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