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KPCA_HUMAN_319_672

Protein kinase C alpha type [Protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (KPCA_HUMAN):D: Protein kinase (345:347, 350, 353, 366, 368, 387, 401, 417:420, 424, 467, 468, 470, 480, 481)345:347, 350, 353, 366, 368, 387, 401, 417:420, 424, 467, 468, 470, 480, 481

Full PDB list

3iw4, 4ra4

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
L
3
4
5
G
3
4
6
F
3
5
0
V
3
5
3
A
3
6
6
K
3
6
8
E
3
8
7
T
4
0
1
M
4
1
7
E
4
1
8
Y
4
1
9
V
4
2
0
D
4
2
4
D
4
6
7
N
4
6
8
M
4
7
0
A
4
8
0
D
4
8
1
[1]3iw4.b lw433 . . . . . . . . . . . . . . . . . .
[1]4ra4.a 3kz31 . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
L
3
4
5
G
3
4
6
K
3
4
7
F
3
5
0
V
3
5
3
A
3
6
6
K
3
6
8
E
3
8
7
T
4
0
1
M
4
1
7
E
4
1
8
Y
4
1
9
V
4
2
0
D
4
2
4
D
4
6
7
N
4
6
8
M
4
7
0
A
4
8
0
D
4
8
1
[1]3iw4.b . . . * . . . . . . . . . . . . . . .
[1]4ra4.a . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
3iw4.b:lw4
4ra4.a:3kz
[1] 3iw4.b
0
2.6
[1] 4ra4.a 1.1
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
3iw4.b
4ra4.a
[1] 3iw4.b
0
.19
[1] 4ra4.a .19
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.7 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3iw4.b
4ra4.a
[1] 3iw4.b
0
1.4
[1] 4ra4.a 1.4
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.7 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3iw4.b
4ra4.a
[1] 3iw4.b
0
1.4
[1] 4ra4.a 1.4
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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