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KC1E_HUMAN_1_295

Casein kinase I isoform epsilon [Protein kinase superfamily. CK1 Ser/Thr protein kinase family. Casein kinase I subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (KC1E_HUMAN):D: Protein kinase (15:17, 23, 36, 38, 49, 52, 56, 80, 82:85, 135, 149, 150)15:17, 23, 36, 38, 49, 52, 56, 80, 82:85, 135, 149, 150

Full PDB list

4hni, 4hok

Pocket contact map

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PDB.ch
   
ligand
A1
I
1
5
G
1
6
I
2
3
A
3
6
K
3
8
Y
5
6
M
8
0
M
8
2
E
8
3
L
8
4
L
8
5
L
1
3
5
D
1
4
9
F
1
5
0
[1]4hni.b 16w25 . . . . . . . . . . . . . .
[1]4hok.g none . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
I
1
5
G
1
6
S
1
7
I
2
3
A
3
6
K
3
8
L
4
9
E
5
2
Y
5
6
M
8
0
M
8
2
E
8
3
L
8
4
L
8
5
L
1
3
5
D
1
4
9
F
1
5
0
[1]4hni.b . . . . . . - . . . . . . . . . .
[1]4hok.g . . . . . . . . . * . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4hni.b:16w
4hok.g is apo
[1] 4hni.b
0
-
[1] 4hok.g 1.7
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4hni.b
4hok.g
[1] 4hni.b
0
.10
[1] 4hok.g .10
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4hni.b
4hok.g
[1] 4hni.b
0
2.2
[1] 4hok.g 2.2
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 1.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4hni.b
4hok.g
[1] 4hni.b
0
3.1
[1] 4hok.g 3.1
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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