If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

HUTI_AERHH_5_411

Imidazolonepropionase [Metallo-dependent hydrolases superfamily. HutI family]

Composition of the binding site

Protein chains monomer
A1 (HUTI_AERHH):84, 147, 180, 217, 245, 248, 322, 324, 32584, 147, 180, 217, 245, 248, 322, 324, 325
Metals (Me):Fe

Full PDB list

2oof, 2q09

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 Me
R
8
4
Y
1
4
7
H
1
8
0
F
2
1
7
H
2
4
5
Q
2
4
8
N
3
2
2
G
3
2
4
T
3
2
5
[1]2oof.a none . . . . . . . . . Fe
[1]2q09.a di612 . . . . . . . . . Fe

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 Me
R
8
4
Y
1
4
7
H
1
8
0
F
2
1
7
H
2
4
5
Q
2
4
8
N
3
2
2
G
3
2
4
T
3
2
5
[1]2oof.a . . . . . . . . . Fe
[1]2q09.a . . . . . . . . . Fe

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
2oof.a is apo
2q09.a:di6
[1] 2oof.a
-
0.1
[1] 2q09.a -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
2oof.a
2q09.a
[1] 2oof.a
0
.01
[1] 2q09.a .01
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2oof.a
2q09.a
[1] 2oof.a
0
0.2
[1] 2q09.a 0.2
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2oof.a
2q09.a
[1] 2oof.a
0
0.8
[1] 2q09.a 0.8
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...