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HRR25_YEAST_1_394

Casein kinase I homolog HRR25 [Protein kinase superfamily. CK1 Ser/Thr protein kinase family. Casein kinase I subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (HRR25_YEAST):D: Protein kinase (15, 16, 23, 36, 38, 56, 82:85, 87, 88, 91, 135, 148)15, 16, 23, 36, 38, 56, 82:85, 87, 88, 91, 135, 148

Full PDB list

4xhl, 5cyz, 5czo (redundant Pocketome entry)

Pocket contact map

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PDB.ch
   
ligand
A1
I
1
5
I
2
3
A
3
6
Y
5
6
I
8
2
D
8
3
L
8
5
P
8
7
S
8
8
D
9
1
L
1
3
5
I
1
4
8
[1]4xhl.a cki18 . . . . . . . . . . . .
[1]5cyz.a none . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
I
1
5
G
1
6
I
2
3
A
3
6
K
3
8
Y
5
6
I
8
2
D
8
3
L
8
4
L
8
5
P
8
7
S
8
8
D
9
1
L
1
3
5
I
1
4
8
[1]4xhl.a . - . . R . . . . . . . . . .
[1]5cyz.a . . . . R . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4xhl.a:cki
5cyz.a is apo
[1] 4xhl.a
0.1
-
[1] 5cyz.a 2.2
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4xhl.a
5cyz.a
[1] 4xhl.a
0
.14
[1] 5cyz.a .14
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.9 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4xhl.a
5cyz.a
[1] 4xhl.a
0
0.9
[1] 5cyz.a 0.9
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4xhl.a
5cyz.a
[1] 4xhl.a
0
1.9
[1] 5cyz.a 1.9
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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