If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

GSTF1_MAIZE_2_213

Glutathione S-transferase 1 [GST superfamily. Phi family]

Composition of the binding site

Protein chains homodimer [domain annotation]
A1 (GSTF1_MAIZE):D: GST N-terminal (11:14, 36, 41, 42, 53:56, 67, 68)
R: Glutathione binding (41, 42)
R: Glutathione binding (54, 55)
R: Glutathione binding (67, 68)
D: GST C-terminal (119, 122)
11:14, 36, 41, 42, 53:56, 67, 68, 119, 122
A2 (GSTF1_MAIZE):D: GST C-terminal (104)104

Full PDB list

1axd, 1bye

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
M
1
1
S
1
2
W
1
3
N
1
4
F
3
6
H
4
1
K
4
2
G
5
3
Q
5
4
V
5
5
P
5
6
E
6
7
S
6
8
I
1
1
9
M
1
2
2
[1]1axd.b ggl.cywG25 . . . . . . . . . . . . . . .
[1]1bye.a ata33 . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 A2
M
1
1
S
1
2
W
1
3
N
1
4
F
3
6
H
4
1
K
4
2
G
5
3
Q
5
4
V
5
5
P
5
6
E
6
7
S
6
8
I
1
1
9
M
1
2
2
N
1
0
4
[1]1axd.b . . . . . . . . . . . . . . . .
[1]1bye.a . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1axd.b:ggl.cywG
1bye.a:ata
[1] 1axd.b
0.1
0.9
[1] 1bye.a 0.4
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1axd.b
1bye.a
[1] 1axd.b
0
.07
[1] 1bye.a .07
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1axd.b
1bye.a
[1] 1axd.b
0
1.2
[1] 1bye.a 1.2
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1axd.b
1bye.a
[1] 1axd.b
0
1.3
[1] 1bye.a 1.3
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...