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F16P1_PIG_2_337_allosteric2

Fructose-1,6-bisphosphatase 1 [FBPase class 1 family]

Composition of the binding site

Protein chains monomer
A1 (F16P1_PIG):48, 51:57, 60, 67:74, 7748, 51:57, 60, 67:74, 77

Full PDB list

1cnq, 1eyi, 1eyj, 1eyk, 1fbc, 1fbd, 1fbe, 1fbf, 1fbg, 1fbh, 1fbp, 1fj6, 1fj9, 1fpb, 1fpd, 1fpe, 1fpf, 1fpg, 1fpi, 1fpj, 1fpk, 1fpl, 1frp, 1fsa, 1kz8, 1lev, 1nuw, 1nux, 1nuy, 1nuz, 1nv0, 1nv1, 1nv2, 1nv3, 1nv4, 1nv5, 1nv6, 1nv7, 1q9d, 1rdx, 1rdy, 1rdz, 1yxi, 1yyz, 1yz0, 2f3b, 2f3d, 2fbp, 2qvu, 2qvv, 3fbp, 4fbp, 4gbv, 4gbw, 4gws, 4gwu, 4gww, 4gwx, 4gwy, 4gwz, 4gx3, 4gx4, 4gx6, 4h45, 4h46, 4kxp, 5fbp (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
K
5
1
A
5
2
G
5
3
I
5
4
A
5
5
H
5
6
L
5
7
I
6
0
V
7
1
K
7
2
K
7
3
L
7
4
L
7
7
[1]1fj9.a none . . . . . . . . - . . . .
[1]1frp.a none . . . . . . . . . . . . .
[1]1fsa.a none . . . . . . . . . . . . .
[1]1kz8.a pfe30 . . . . . . . . . . . . .
[1]1q9d.a oi140 . . . . . . . . . . . . .
[1]1yxi.a none . . . . L . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
A
4
8
K
5
1
A
5
2
G
5
3
I
5
4
A
5
5
H
5
6
L
5
7
I
6
0
T
6
7
G
6
8
D
6
9
Q
7
0
V
7
1
K
7
2
K
7
3
L
7
4
L
7
7
[1]1fj9.a . . . . . . . . . - - - - - . . . .
[1]1frp.a . . . . . . * . . - - - - . . . . .
[1]1fsa.a . . . . . . * . . . . . . * . . . .
[1]1kz8.a . . . . . . * . . - - - - . . . . .
[1]1q9d.a . . . . . . . . . . . . . . . . . .
[1]1yxi.a . . . . . L . * . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1fj9.a is apo
1frp.a is apo
1fsa.a is apo
1kz8.a:pfe
1q9d.a:oi1
1yxi.a is apo
[1] 1fj9.a
-
- - 0.7 0.6 -
[1] 1frp.a -
-
- 0.2 1.5 -
[1] 1fsa.a - -
-
4.2 2.5 -
[1] 1kz8.a - - -
0
1.5 -
[1] 1q9d.a - - - 0.8
0
-
[1] 1yxi.a - - - 4.1 0
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1fj9.a
1frp.a
1fsa.a
1kz8.a
1q9d.a
1yxi.a
[1] 1fj9.a
0
.06 .21 .06 .03 .19
[1] 1frp.a .06
0
.19 .01 .04 .21
[1] 1fsa.a .21 .19
0
.19 .21 .39
[1] 1kz8.a .06 .01 .19
0
.04 .20
[1] 1q9d.a .03 .04 .21 .04
0
.17
[1] 1yxi.a .19 .21 .39 .20 .17
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.7 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1fj9.a
1frp.a
1fsa.a
1kz8.a
1q9d.a
1yxi.a
[1] 1fj9.a
0
0.7 1.0 0.6 0.9 13
[1] 1frp.a 0.7
0
1.5 0.7 1.1 13
[1] 1fsa.a 1.0 1.5
0
1.6 4.9 18
[1] 1kz8.a 0.6 0.7 1.6
0
0.6 12
[1] 1q9d.a 0.9 1.1 4.9 0.6
0
18
[1] 1yxi.a 13 13 18 12 18
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 1.0 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1fj9.a
1frp.a
1fsa.a
1kz8.a
1q9d.a
1yxi.a
[1] 1fj9.a
0
1.5 1.4 1.6 1.7 13
[1] 1frp.a 1.5
0
1.9 1.0 1.3 13
[1] 1fsa.a 1.4 1.9
0
2.1 5.5 18
[1] 1kz8.a 1.6 1.0 2.1
0
1.0 12
[1] 1q9d.a 1.7 1.3 5.5 1.0
0
17
[1] 1yxi.a 13 13 18 12 17
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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