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ESR2_HUMAN_260_502

Estrogen receptor beta [Nuclear hormone receptor family. NR3 subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (ESR2_HUMAN):D: NR LBD (295, 298, 299, 301:303, 305:307, 309, 310, 314, 319, 324, 325, 327:329, 331, 332, 335, 336, 339, 340, 343, 346, 356, 370, 373, 376, 377, 380, 472, 473, 475, 476, 479, 483:498)
499:502
295, 298, 299, 301:303, 305:307, 309, 310, 314, 319, 324, 325, 327:329, 331, 332, 335, 336, 339, 340, 343, 346, 356, 370, 373, 376, 377, 380, 472, 473, 475, 476, 479, 483:502

Full PDB list

1hj1, 1l2j, 1nde, 1qkm, 1qkn, 1u3q, 1u3r, 1u3s, 1u9e, 1x76, 1x78, 1x7b, 1x7j, 1yy4, 1yye, 1zaf, 2fsz, 2giu, 2i0g, 2j7x, 2j7y, 2jj3, 2nv7, 2qtu, 2yjd, 2yly, 2z4b, 3oll, 3ols, 3omo, 3omp, 3omq, 4j24, 4j26, 4zi1, 5toa

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
M
2
9
5
L
2
9
8
T
2
9
9
L
3
0
1
A
3
0
2
D
3
0
3
E
3
0
5
L
3
0
6
V
3
0
7
M
3
0
9
I
3
1
0
K
3
1
4
F
3
1
9
L
3
2
4
Q
3
2
7
V
3
2
8
L
3
3
1
E
3
3
2
W
3
3
5
M
3
3
6
L
3
3
9
M
3
4
0
L
3
4
3
R
3
4
6
F
3
5
6
I
3
7
3
I
3
7
6
F
3
7
7
L
3
8
0
G
4
7
2
H
4
7
5
L
4
7
6
M
4
7
9
V
4
8
7
D
4
8
9
L
4
9
0
L
4
9
1
E
4
9
3
M
4
9
4
A
4
9
7
V
4
9
9
[1]1u3q.b 27218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]1u3r.b 338,KLVQLLTTT92 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1u3s.a 797,KLVQLLTTT92 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]1u9e.b 397,KLVQLLTTT88 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1x76.b 697,KLVQLLTTT90 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]1x78.b 244,KLVQLLTTT91 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1x7b.a 041,HKLVQLLTTT101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1x7j.b gen,HKLVQLLTTT101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]1yy4.b 4na,KLVQLLTTT90 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]1yye.a 196,HKLVQLLTTT102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1zaf.b 789,SGSHKLVQLLTTT116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2j7x.a est,IQSLINLLADN100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]2j7y.a e3o,QSLINLLAD85 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]2nv7.b 555,HKLVQLLTTT101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]2yjd.a aceHmk8ILHmk8LLQDS,yjd116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]3oll.a est,RHKILHRLLQ112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]3ols.a est,RHKILHRLLQ108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]3omo.a RHKILHRLLQ,wv7105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]3omp.a RHKILHRLLQ,w14105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]3omq.a RHKILHRLLQ,w23106 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4j24.a est,RHPLLLRHLLQN126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4j24.b est,RHPLLLRHLLQ108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4j24.d est,RHPLLLRHLL103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4j26.a est,HPLLMRLLHHPS121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4j26.b est,HPLLMRLLHH108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4zi1.a kb0,SLIDLLAD83 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1qkm.a gen20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2giu.a fbr20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2i0g.a i0g21 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[2]2jj3.b jj324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2qtu.b 3as26 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2z4b.b dc823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[3]1hj1.a aoe38 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - - - - - - - -
[3]2fsz.b oht,oht58 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[4]1l2j.a etc24 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[5]1nde.a mon33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[6]2yly.b su424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[7]5toa.a est20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[8]1qkn.a ral34 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - . . . . . . -

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
M
2
9
5
L
2
9
8
T
2
9
9
L
3
0
1
A
3
0
2
D
3
0
3
E
3
0
5
L
3
0
6
V
3
0
7
M
3
0
9
I
3
1
0
K
3
1
4
F
3
1
9
L
3
2
4
F
3
2
5
Q
3
2
7
V
3
2
8
R
3
2
9
L
3
3
1
E
3
3
2
W
3
3
5
M
3
3
6
L
3
3
9
M
3
4
0
L
3
4
3
R
3
4
6
F
3
5
6
V
3
7
0
I
3
7
3
I
3
7
6
F
3
7
7
L
3
8
0
G
4
7
2
M
4
7
3
H
4
7
5
L
4
7
6
M
4
7
9
N
4
8
3
V
4
8
4
V
4
8
5
P
4
8
6
V
4
8
7
Y
4
8
8
D
4
8
9
L
4
9
0
L
4
9
1
L
4
9
2
E
4
9
3
M
4
9
4
L
4
9
5
N
4
9
6
A
4
9
7
H
4
9
8
V
4
9
9
L
5
0
0
R
5
0
1
G
5
0
2
[1]1u3q.b . . . . . . . . . . . * . . . . . . . * . . . . . . . . . . . . . . . * . . . . . . . . * * * * * . . . - - - - -
[1]1u3r.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . * . . * . . . * * * * -
[1]1u3s.a . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . - - - - -
[1]1u9e.b . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . * . . . . . . . . . . . . . * * . . * . . . * * * . -
[1]1x76.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . - - - - -
[1]1x78.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . * . . . . . . . . . . . . . . * * . * . . . . . * - -
[1]1x7b.a . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . . . * - -
[1]1x7j.b . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . * . . . . . . . . . . . . . . * . . * . . . - - - - -
[1]1yy4.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . * * * . . . . . . . . . . . . . * * * . * . . . - - - - -
[1]1yye.a . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . . . * - -
[1]1zaf.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . * . . . . . . . . . . . . . . * * . * . . . * * * - -
[1]2j7x.a * . . . . . . . . . . . . . L . . . . * . . . . . . . . * . * . . . . . . . . . . . . . . * * . * . . . . - - - -
[1]2j7y.a . . . . . . . . . . . . . . L . . . . * . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . . - - - -
[1]2nv7.b . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . - - - - -
[1]2yjd.a * . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . . . . . . . . . . . . * * * * . . . - - - - -
[1]3oll.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . * . . . . . . . . . . . * . . * * . * . . * . - - - -
[1]3ols.a * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . * . . . . . . . . . . . . . . * * . * . . . - - - - -
[1]3omo.a * . . . . . . . . . . . . . . . . . . . . . . . . . . . * * * . . . . * . . . . . . . . . * * . * . . . - - - - -
[1]3omp.a * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . * . . . . . . . . . . . . . . * * . * . . . - - - - -
[1]3omq.a * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . * . . . . . . . . . . . . . . * * . * . . . - - - - -
[1]4j24.a * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . . - - - -
[1]4j24.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . . - - - -
[1]4j24.d * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . * * . * . . . - - - - -
[1]4j26.a * . . . . . . . . . . * . . . . . . . . . . . . . . . . * . * . . . . . . . . . . . . . . * * . * . . . . - - - -
[1]4j26.b * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . * . . . . . . . . . . . . . . * * . * . . . . - - - -
[1]4zi1.a * . . . . . . . . . . . . . . . . . . * . . . . . . . . * . * . . . . . . . . . . . . . . * * * * . . . * * . . .
[2]1qkm.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . * * * * * * * * * * - -
[2]2giu.a * . . . . . . . . . . . . . . . . . . . . . . . . . . - . * . . . . . . . - . . . * . . . * * * * * * * * * * - -
[2]2i0g.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . - - . . * . . . * * * * * * * * - - - -
[2]2jj3.b . . . . . . . . . . . * . . . . . . . . . . . . . . . . . * * . . . . . . . . . . * . . . * * * * * * * * * * * -
[2]2qtu.b . . . . . . . . . . . * . . . . . . . . . . . . . . . . . * * . . . . . . - - - - * . . . * * * * * * * * * * - -
[2]2z4b.b . . . . . . . . . . . * . . . . . . . . . . . . . . . . . . * . . . . . . - - . . * . . . * * * * * * * * * * - -
[3]1hj1.a . . . . . . . . . . . . . * L . . . . . . . . . . . . . . . * . . . . . . - - - - - - - - - - - - - - - - - - - -
[3]2fsz.b . . . . . . . . . . . * . . . . . . . . . . . . . . . . . * * . . . . . . . . . . . . . . . . . . . . . . . . * -
[4]1l2j.a . . . . . . . . . . . * . . . . . . . * . . . . . . . . * . * . . . . . . . . . . * . . . * * * * * * * * * * * -
[5]1nde.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - - - . * * * * * * * * * * * * * * - -
[6]2yly.b . . . . . . . . . . . * . . . . . . . . . . . . . . . . . * . . . . . . . . . . . * * * * * * * * * * * * - - - -
[7]5toa.a . . . . . . . . . . . . . . . . . . . . . * . . . . . . * . * . . . . . . . . . . . . * * * . . * * * * * * * . -
[8]1qkn.a . . . . . . . . . . . . . . L . . . . * . . . . . . . . . . * . . . . * . - - - - - - * * * * * * * * * - - - - -

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1u3q.b:272
1u3r.b:338,KLVQLLTTT
1u3s.a:797,KLVQLLTTT
1u9e.b:397,KLVQLLTTT
1x76.b:697,KLVQLLTTT
1x78.b:244,KLVQLLTTT
1x7b.a:041,HKLVQLLTTT
1x7j.b:HKLVQLLTTT,gen
1yy4.b:4na,KLVQLLTTT
1yye.a:196,HKLVQLLTTT
1zaf.b:789,SGSHKLVQLLTTT
2j7x.a:IQSLINLLADN,est
2j7y.a:QSLINLLAD,e3o
2nv7.b:555,HKLVQLLTTT
2yjd.a:aceHmk8ILHmk8LLQDS,yjd
3oll.a:RHKILHRLLQ,est
3ols.a:RHKILHRLLQ,est
3omo.a:RHKILHRLLQ,wv7
3omp.a:RHKILHRLLQ,w14
3omq.a:RHKILHRLLQ,w23
4j24.a:RHPLLLRHLLQN,est
4j24.b:RHPLLLRHLLQ,est
4j24.d:RHPLLLRHLL,est
4j26.a:HPLLMRLLHHPS,est
4j26.b:HPLLMRLLHH,est
4zi1.a:SLIDLLAD,kb0
1qkm.a:gen
2giu.a:fbr
2i0g.a:i0g
2jj3.b:jj3
2qtu.b:3as
2z4b.b:dc8
1hj1.a:aoe
2fsz.b:oht
1l2j.a:etc
1nde.a:mon
2yly.b:su4
5toa.a:est
1qkn.a:ral
[1] 1u3q.b
0.1
1.9 1.3 0.7 0.9 0.9 0.8 0.8 1.3 0.8 1.3 0.9 0.6 0.7 1.6 1.4 2.0 1.5 2.2 1.9 1.5 1.6 1.6 1.7 1.9 1.1 0.4 0.8 0.4 1.2 1.5 0.6 7.1 9.1 2.7 6.0 1.2 0.2 6.7
[1] 1u3r.b 0.1
0.1
0.5 0 0.1 0.2 0.2 0.2 0.3 0.4 1.1 0.4 0.3 0.2 2.3 8.8 9.1 8.3 9.4 8.7 9.5 5.0 6.2 4.2 4.7 0.4 0.2 1.2 0.3 0.3 0.6 0.3 7.4 10 2.4 5.1 1.3 0.2 6.3
[1] 1u3s.a 0 0.9
0.3
0.2 0.6 0.5 0.1 0.3 0.4 0.2 0.3 0.2 0.2 0.3 0.4 0.4 0.8 0.5 0.6 0.5 0.8 0.7 1.1 0.5 1.0 0.7 0 1.0 0.1 0.4 0.6 0.2 7.6 9.1 2.1 3.8 0.7 0.1 6.8
[1] 1u9e.b 0.1 0.3 0.5
0
0.2 0.3 0.3 0.2 0.4 0.2 0.4 0.4 0.2 0.2 1.9 6.8 7.5 7.3 7.0 7.5 6.9 3.4 4.8 4.1 4.6 0.9 0.1 1.0 0.3 0.5 0.9 0.3 7.6 9.9 2.5 5.2 1.1 0.2 7.1
[1] 1x76.b 0.1 0.3 0.4 0.1
0.1
0.1 0.4 0.2 0.6 0.3 0.1 0.4 0.2 0.4 0.6 0.7 0.6 0.8 1.3 0.8 1.3 0.9 1.0 0.9 1.0 0.5 0.1 1.3 0.3 0.5 0.9 0.3 7.4 8.3 2.5 5.4 1.4 0.2 6.3
[1] 1x78.b 0.1 0.5 0.3 0.1 0.1
0
0.4 0.2 0.6 0.3 0.2 0.4 0.2 0.3 0.6 0.8 1.9 1.2 1.6 1.2 1.5 0.5 0.8 0.7 1.0 0.5 0.1 1.0 0.2 0.6 0.7 0.3 7.4 8.2 2.5 5.5 1.4 0.2 6.0
[1] 1x7b.a 0.1 1.3 0.5 0.5 0.6 0.5
0.3
0.5 0.6 0.4 0.8 0.4 0.4 0.3 0.8 1.3 2.7 2.2 2.5 2.1 2.3 1.4 2.0 1.1 1.4 0.5 0.1 1.0 0.2 0.5 0.9 0.4 7.5 9.7 2.5 5.4 1.3 0.2 6.4
[1] 1x7j.b 0.1 0 0.4 0 0.2 0.1 0.3
0.1
0.2 0.2 0.1 0.2 0 0.1 0.8 1.1 0.6 0.5 1.0 0.5 1.3 1.1 1.2 0.8 1.4 0.3 0.1 1.2 0.1 0.2 0.4 0.1 7.0 9.4 2.2 4.7 1.0 0.2 6.0
[1] 1yy4.b 0.1 0.2 0.5 0.1 0.5 0.2 0.4 0.1
0.4
0.5 0.1 0.2 0.2 0.3 0.7 0.9 0.8 0.6 1.1 0.6 1.3 0.9 1.2 0.6 1.0 0.9 0.1 1.0 0.3 0.4 0.6 0.4 7.5 9.0 2.0 5.7 1.1 0.3 6.5
[1] 1yye.a 0.1 1.4 0.8 0.5 1.0 0.6 0.3 0.5 0.8
0.2
0.6 0.3 0.4 0.3 0.7 1.4 2.8 2.4 2.8 2.6 2.0 1.3 1.7 1.0 1.3 0.6 0.3 1.2 0.2 0.5 0.6 0.3 7.4 10 2.3 4.6 1.1 0.2 6.4
[1] 1zaf.b 0.1 0.3 0.5 0.2 0.2 0.3 0.4 0.1 0.3 0.3
0.1
0.3 0 0.3 1.8 7.3 7.2 7.8 7.9 8.0 6.4 2.9 3.8 4.4 4.2 0.9 0.1 1.3 0.3 0.5 0.7 0.4 7.0 10 2.2 5.3 1.0 0.2 6.1
[1] 2j7x.a 0.1 0.9 0.5 0.6 0.8 0.7 0.5 0.5 0.7 0.6 0.3
0
0 0.2 0.2 0.9 0.9 0.8 1.2 0.8 0.8 0.8 0.9 0.8 0.7 0.6 0.1 1.0 0.2 0.6 0.8 0.4 7.0 9.5 1.3 6.0 0.4 0.1 6.7
[1] 2j7y.a 0.1 1.1 0.6 0.3 0.4 0.5 0.3 0.5 0.5 0.5 0.3 0.2
0
0.2 0.6 0.8 1.0 0.8 1.4 1.0 0.9 1.0 1.0 0.8 0.8 0.6 0.2 0.9 0.4 0.5 0.8 0.4 7.3 9.1 1.9 5.2 0.9 0.2 6.9
[1] 2nv7.b 0.1 0.5 0.5 0.1 0.4 0.3 0.2 0.2 0.3 0.3 0.3 0.2 0.3
0
0.8 1.0 0.7 0.9 1.2 1.1 1.5 1.1 1.2 1.1 1.5 0.6 0.2 1.0 0.1 0.5 0.4 0.1 7.5 9.6 2.3 4.6 0.9 0.2 6.5
[1] 2yjd.a 0.4 1.3 1.8 1.0 1.1 1.1 1.0 1.1 1.7 1.1 0.5 0.4 0.2 0.5
0
0.8 1.0 0.8 1.2 0.9 1.0 1.1 1.4 1.1 1.1 0.9 0.4 0.8 0.5 0.5 0.9 0.5 7.6 11 1.5 5.6 1.1 0.3 6.8
[1] 3oll.a 0.1 1.2 0.7 0.8 1.1 0.9 0.6 1.0 0.9 0.6 0.4 0 0 0.5 0.1
0.4
1.1 0.9 1.4 1.0 0.5 0.5 0.3 0.6 0.6 0.6 0.1 0.9 0.1 0.4 0.8 0.4 6.2 8.5 1.2 5.1 0.4 0.1 5.9
[1] 3ols.a 0.1 0.7 0.6 0.3 0.4 0.4 0.4 0.4 0.8 0.7 0.2 0.2 0.2 0.4 0.5 0.3
0.3
0.4 0.7 0.3 0.5 0.3 0.4 0.4 0.5 0.6 0.1 1.0 0.4 1.0 1.3 0.6 6.4 8.6 1.8 5.7 0.8 0.1 6.6
[1] 3omo.a 0.2 1.3 1.3 0.6 0.9 1.1 0.8 0.9 1.5 1.1 0.7 0.7 0.5 1.1 1.1 0.6 0.8
0.7
0.7 0.6 0.9 0.8 0.8 0.8 0.9 1.2 0.9 1.3 1.1 1.4 1.9 1.5 6.5 9.1 3.3 6.3 1.1 0.3 7.3
[1] 3omp.a 0.2 1.1 0.8 0.3 0.5 0.5 0.8 0.7 1.0 1.0 0.3 0.4 0.4 0.4 1.0 0.4 0.5 0.5
0.5
0.5 0.7 0.4 0.5 0.6 0.5 1.0 0.5 1.1 0.8 1.3 1.7 1.1 6.6 9.2 2.9 5.9 1.2 0.2 7.5
[1] 3omq.a 0.2 1.0 0.6 0.2 0.4 0.5 0.6 0.4 0.9 0.9 0.3 0.4 0.1 0.4 0.7 0.4 0.4 0.3 0.6
0.3
0.6 0.3 0.3 0.5 0.5 1.1 0.4 1.1 0.8 1.0 1.6 0.9 6.5 8.7 3.0 6.0 0.8 0.1 6.9
[1] 4j24.a 0.1 0.8 0.6 0.2 0.3 0.3 0.4 0.4 0.4 0.6 0.2 0 0 0.1 0.5 0 0.5 0.2 0.6 0.3
0
0 0 0.2 0.2 0.5 0.1 0.9 0.2 0.7 1.0 0.4 6.0 7.4 1.9 5.4 0.4 0.1 6.1
[1] 4j24.b 0.1 0.8 0.7 0.3 0.3 0.4 0.4 0.4 0.6 0.7 0.3 0 0 0.1 0.6 0.2 0.6 0.3 0.6 0.3 0.2
0.1
0.1 0.2 0.1 0.5 0.1 0.9 0.2 0.5 1.0 0.4 7.0 8.3 1.3 5.2 0.6 0.1 6.1
[1] 4j24.d 0.1 0.7 0.6 0.2 0.3 0.4 0.5 0.3 0.4 0.6 0.1 0 0 0.2 0.5 0.2 0.5 0.4 0.6 0.3 0.1 0.1
0.1
0.2 0.1 0.6 0.1 0.9 0.2 0.6 0.8 0.6 7.2 8.1 1.3 5.4 0.6 0.1 6.0
[1] 4j26.a 0.1 1.6 0.8 0.8 1.0 0.8 0.6 0.7 1.6 0.9 1.0 0.6 0 0.3 0.4 0.2 0.6 0.2 0.6 0.3 0.2 0 0.2
0
0 0.7 0.2 1.1 0.3 0.6 0.7 0.7 6.4 8.1 1.9 5.5 0.5 0.1 5.9
[1] 4j26.b 0.1 1.4 0.8 0.8 1.1 0.8 0.6 0.7 1.6 0.9 1.0 0.6 0 0.3 0.4 0.2 0.6 0.2 0.6 0.3 0.2 0 0.2 0
0
0.7 0.2 1.1 0.3 0.6 0.7 0.7 6.4 8.1 1.9 5.5 0.5 0.1 5.9
[1] 4zi1.a 0.1 1.0 0.7 0.6 0.6 0.6 0.2 0.4 0.6 0.6 0.5 0.4 0.1 0.2 0.8 7.3 7.0 7.7 7.2 7.3 6.7 2.3 2.6 2.9 2.8
0.1
0.1 1.1 0.6 0.3 0.5 0.6 6.6 11 1.3 5.6 0.8 0.2 5.6
[2] 1qkm.a 0.2 25 24 24 25 25 25 25 24 27 27 21 20 24 22 23 25 24 26 24 27 26 27 25 25 21
0
0.7 0.3 0.5 0.9 0.2 5.9 13 2.2 5.4 0.9 0.2 6.8
[2] 2giu.a 0.3 22 23 21 22 21 22 21 20 23 23 20 18 21 22 21 23 23 23 23 24 24 24 22 21 19 0.4
0
0.3 0.7 0.6 0.5 6.1 16 1.3 6.0 0.7 0.2 7.1
[2] 2i0g.a 0.2 23 22 21 21 21 22 22 21 23 23 18 18 21 20 21 22 22 22 22 22 23 23 22 21 19 0.1 0.9
0.1
0.2 0.3 0 5.0 16 1.6 5.1 0.3 0.2 6.7
[2] 2jj3.b 0.2 26 24 24 25 24 25 24 24 26 25 22 20 24 24 23 26 27 26 27 25 25 26 24 24 21 0.2 0.9 0.1
0.2
0.3 0.2 5.5 17 1.2 5.4 0.3 0.2 6.7
[2] 2qtu.b 0.2 25 24 24 24 24 24 24 24 26 25 22 20 23 24 23 26 26 27 27 25 25 27 24 24 21 0.1 0.9 0.2 0.1
0.4
0.2 5.4 16 1.6 5.4 0.4 0.2 6.6
[2] 2z4b.b 0.2 25 24 23 24 24 25 24 23 26 25 21 20 23 24 23 26 26 27 27 24 25 26 24 24 20 0.1 0.9 0.1 0.3 0.5
0
5.5 16 2.0 5.4 0.4 0.2 6.8
[3] 1hj1.a 0.1 0.6 0.5 0.8 0.8 0.5 0.2 0.5 0.5 0.3 1.0 0.5 0.1 0.3 1.0 0.6 1.0 0.6 1.3 0.7 0.4 0.5 0.5 0.6 0.7 0.4 0.1 0.9 0.2 0.3 0.4 0.3
0
0.5 1.6 1.7 0.5 0.1 0.4
[3] 2fsz.b 0.1 1.2 0.7 0.3 0.6 0.5 0.5 0.4 0.9 1.1 0.8 0.5 0.4 0.5 1.4 1.2 2.1 1.3 1.6 1.5 0.6 0.5 0.6 0.5 1.3 0.6 0.1 0.9 0.3 0.2 0.4 0.4 0.6
0
1.2 1.6 0.3 0.1 0.8
[4] 1l2j.a 0.1 30 28 30 30 30 31 33 28 31 32 25 25 30 29 28 30 31 30 30 31 32 30 30 31 25 0 1.5 0 0.5 0.8 0.4 5.6 16
0
5.7 0.5 0.3 7.3
[5] 1nde.a 0 34 31 34 34 33 33 36 33 32 35 28 27 34 31 28 29 30 29 30 37 37 33 37 37 30 0 0.6 0 0 0.2 0.1 4.4 12 1.0
0.2
0.2 0.1 1.2
[6] 2yly.b 0 25 28 26 26 27 29 29 27 29 28 24 22 28 25 22 22 23 23 23 27 26 23 26 27 22 0.2 0.7 0.2 0.3 0.5 0.3 4.3 11 1.1 2.5
0.1
0 4.6
[7] 5toa.a 0.1 8.1 8.9 11 11 11 10 12 11 9.7 10 12 11 11 5.4 10 9.3 9.5 9.6 9.4 8.6 7.6 6.7 9.6 10 5.9 0 0.9 0.2 0.8 1.1 0.3 9.7 10 2.7 5.0 1.2
0.1
7.0
[8] 1qkn.a 0.4 26 32 26 27 26 31 28 26 31 30 32 32 30 32 33 33 33 34 33 34 36 35 33 33 30 0.7 1.6 0.8 1.3 1.3 1.2 0.1 9.5 2.2 1.9 1.7 0.9
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (8 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1u3q.b
1u3r.b
1u3s.a
1u9e.b
1x76.b
1x78.b
1x7b.a
1x7j.b
1yy4.b
1yye.a
1zaf.b
2j7x.a
2j7y.a
2nv7.b
2yjd.a
3oll.a
3ols.a
3omo.a
3omp.a
3omq.a
4j24.a
4j24.b
4j24.d
4j26.a
4j26.b
4zi1.a
1qkm.a
2giu.a
2i0g.a
2jj3.b
2qtu.b
2z4b.b
1hj1.a
2fsz.b
1l2j.a
1nde.a
2yly.b
5toa.a
1qkn.a
[1] 1u3q.b
0
.29 .12 .24 .09 .12 .14 .10 .09 .14 .25 .13 .10 .11 .14 .14 .14 .12 .12 .13 .12 .11 .12 .12 .13 .26 .78 .76 .68 .77 .76 .76 .26 .30 .85 .83 .64 .52 .58
[1] 1u3r.b .29
0
.26 .09 .22 .22 .25 .22 .24 .25 .12 .28 .25 .25 .30 .29 .28 .30 .29 .28 .26 .25 .26 .28 .28 .20 .67 .66 .73 .66 .66 .66 .43 .43 .71 .78 .73 .50 .78
[1] 1u3s.a .12 .26
0
.22 .08 .11 .10 .06 .09 .08 .22 .08 .05 .08 .11 .11 .10 .12 .10 .10 .08 .07 .08 .10 .10 .24 .74 .72 .64 .74 .72 .72 .28 .30 .83 .81 .63 .52 .56
[1] 1u9e.b .24 .09 .22
0
.19 .19 .22 .19 .20 .21 .10 .24 .22 .22 .26 .26 .25 .27 .25 .25 .24 .23 .23 .26 .26 .16 .66 .64 .71 .65 .65 .64 .41 .42 .73 .73 .67 .45 .71
[1] 1x76.b .09 .22 .08 .19
0
.06 .11 .04 .04 .09 .18 .09 .06 .07 .10 .10 .08 .09 .09 .08 .08 .07 .08 .09 .09 .25 .76 .73 .66 .76 .74 .74 .26 .31 .86 .85 .65 .51 .59
[1] 1x78.b .12 .22 .11 .19 .06
0
.08 .08 .06 .08 .16 .12 .10 .10 .13 .11 .11 .12 .11 .10 .11 .10 .11 .11 .10 .26 .74 .70 .67 .72 .71 .70 .28 .32 .82 .81 .67 .48 .62
[1] 1x7b.a .14 .25 .10 .22 .11 .08
0
.10 .11 .06 .21 .13 .10 .10 .11 .14 .13 .15 .14 .13 .12 .11 .11 .13 .13 .22 .74 .72 .67 .73 .71 .71 .30 .34 .82 .82 .68 .49 .61
[1] 1x7j.b .10 .22 .06 .19 .04 .08 .10
0
.06 .08 .19 .09 .07 .06 .10 .10 .10 .12 .11 .10 .09 .07 .08 .10 .09 .25 .75 .73 .66 .76 .74 .74 .26 .30 .84 .84 .64 .52 .57
[1] 1yy4.b .09 .24 .09 .20 .04 .06 .11 .06
0
.11 .20 .09 .07 .08 .11 .10 .09 .10 .09 .09 .09 .08 .09 .09 .09 .25 .75 .72 .66 .75 .74 .74 .26 .30 .85 .84 .64 .51 .59
[1] 1yye.a .14 .25 .08 .21 .09 .08 .06 .08 .11
0
.20 .12 .10 .09 .12 .13 .13 .16 .14 .13 .12 .11 .11 .14 .14 .24 .75 .71 .67 .72 .71 .71 .31 .33 .82 .80 .67 .50 .57
[1] 1zaf.b .25 .12 .22 .10 .18 .16 .21 .19 .20 .20
0
.22 .21 .22 .25 .22 .22 .24 .23 .22 .22 .22 .23 .23 .23 .15 .63 .60 .67 .61 .60 .59 .40 .45 .69 .71 .67 .44 .73
[1] 2j7x.a .13 .28 .08 .24 .09 .12 .13 .09 .09 .12 .22
0
.04 .11 .07 .06 .05 .10 .08 .08 .07 .05 .04 .09 .09 .21 .74 .70 .63 .72 .71 .73 .26 .30 .84 .84 .62 .54 .56
[1] 2j7y.a .10 .25 .05 .22 .06 .10 .10 .07 .07 .10 .21 .04
0
.08 .08 .08 .08 .10 .08 .08 .08 .05 .06 .09 .09 .23 .72 .69 .62 .72 .70 .71 .26 .29 .84 .83 .61 .51 .55
[1] 2nv7.b .11 .25 .08 .22 .07 .10 .10 .06 .08 .09 .22 .11 .08
0
.10 .11 .11 .13 .11 .11 .11 .10 .10 .11 .10 .25 .72 .73 .65 .75 .73 .73 .27 .31 .85 .84 .64 .51 .57
[1] 2yjd.a .14 .30 .11 .26 .10 .13 .11 .10 .11 .12 .25 .07 .08 .10
0
.11 .09 .12 .10 .10 .11 .11 .10 .12 .11 .22 .72 .68 .65 .74 .72 .74 .30 .34 .84 .85 .63 .54 .57
[1] 3oll.a .14 .29 .11 .26 .10 .11 .14 .10 .10 .13 .22 .06 .08 .11 .11
0
.05 .08 .07 .06 .07 .06 .06 .07 .06 .24 .72 .68 .61 .70 .69 .71 .25 .28 .82 .84 .63 .50 .58
[1] 3ols.a .14 .28 .10 .25 .08 .11 .13 .10 .09 .13 .22 .05 .08 .11 .09 .05
0
.06 .05 .04 .05 .06 .05 .07 .06 .23 .74 .70 .63 .72 .71 .73 .25 .28 .85 .86 .65 .51 .59
[1] 3omo.a .12 .30 .12 .27 .09 .12 .15 .12 .10 .16 .24 .10 .10 .13 .12 .08 .06
0
.03 .03 .08 .10 .10 .08 .08 .26 .73 .69 .65 .73 .72 .73 .26 .29 .86 .88 .66 .49 .60
[1] 3omp.a .12 .29 .10 .25 .09 .11 .14 .11 .09 .14 .23 .08 .08 .11 .10 .07 .05 .03
0
.02 .07 .08 .08 .08 .07 .25 .72 .70 .64 .73 .72 .73 .26 .30 .85 .86 .65 .48 .59
[1] 3omq.a .13 .28 .10 .25 .08 .10 .13 .10 .09 .13 .22 .08 .08 .11 .10 .06 .04 .03 .02
0
.06 .08 .08 .08 .07 .25 .72 .70 .62 .72 .71 .72 .25 .29 .85 .87 .66 .48 .60
[1] 4j24.a .12 .26 .08 .24 .08 .11 .12 .09 .09 .12 .22 .07 .08 .11 .11 .07 .05 .08 .07 .06
0
.04 .03 .05 .05 .24 .72 .70 .62 .72 .71 .72 .22 .25 .85 .85 .63 .50 .60
[1] 4j24.b .11 .25 .07 .23 .07 .10 .11 .07 .08 .11 .22 .05 .05 .10 .11 .06 .06 .10 .08 .08 .04
0
.01 .06 .06 .23 .74 .71 .62 .72 .71 .72 .23 .25 .84 .83 .61 .52 .57
[1] 4j24.d .12 .26 .08 .23 .08 .11 .11 .08 .09 .11 .23 .04 .06 .10 .10 .06 .05 .10 .08 .08 .03 .01
0
.06 .06 .22 .74 .71 .62 .72 .71 .72 .23 .26 .86 .84 .61 .52 .58
[1] 4j26.a .12 .28 .10 .26 .09 .11 .13 .10 .09 .14 .23 .09 .09 .11 .12 .07 .07 .08 .08 .08 .05 .06 .06
0
0 .25 .73 .70 .63 .72 .71 .71 .25 .27 .84 .84 .61 .48 .60
[1] 4j26.b .13 .28 .10 .26 .09 .10 .13 .09 .09 .14 .23 .09 .09 .10 .11 .06 .06 .08 .07 .07 .05 .06 .06 0
0
.25 .73 .69 .63 .73 .71 .72 .25 .28 .84 .83 .62 .49 .59
[1] 4zi1.a .26 .20 .24 .16 .25 .26 .22 .25 .25 .24 .15 .21 .23 .25 .22 .24 .23 .26 .25 .25 .24 .23 .22 .25 .25
0
.65 .61 .65 .62 .62 .64 .40 .45 .70 .76 .65 .51 .69
[2] 1qkm.a .78 .67 .74 .66 .76 .74 .74 .75 .75 .75 .63 .74 .72 .72 .72 .72 .74 .73 .72 .72 .72 .74 .74 .73 .73 .65
0
.13 .17 .14 .12 .11 .83 .84 .31 .48 .51 .61 .65
[2] 2giu.a .76 .66 .72 .64 .73 .70 .72 .73 .72 .71 .60 .70 .69 .73 .68 .68 .70 .69 .70 .70 .70 .71 .71 .70 .69 .61 .13
0
.18 .14 .13 .14 .80 .80 .31 .49 .51 .59 .67
[2] 2i0g.a .68 .73 .64 .71 .66 .67 .67 .66 .66 .67 .67 .63 .62 .65 .65 .61 .63 .65 .64 .62 .62 .62 .62 .63 .63 .65 .17 .18
0
.14 .12 .13 .72 .72 .36 .52 .43 .60 .53
[2] 2jj3.b .77 .66 .74 .65 .76 .72 .73 .76 .75 .72 .61 .72 .72 .75 .74 .70 .72 .73 .73 .72 .72 .72 .72 .72 .73 .62 .14 .14 .14
0
.05 .06 .81 .78 .27 .45 .51 .57 .64
[2] 2qtu.b .76 .66 .72 .65 .74 .71 .71 .74 .74 .71 .60 .71 .70 .73 .72 .69 .71 .72 .72 .71 .71 .71 .71 .71 .71 .62 .12 .13 .12 .05
0
.04 .81 .80 .30 .47 .51 .58 .63
[2] 2z4b.b .76 .66 .72 .64 .74 .70 .71 .74 .74 .71 .59 .73 .71 .73 .74 .71 .73 .73 .73 .72 .72 .72 .72 .71 .72 .64 .11 .14 .13 .06 .04
0
.81 .82 .28 .46 .53 .56 .64
[3] 1hj1.a .26 .43 .28 .41 .26 .28 .30 .26 .26 .31 .40 .26 .26 .27 .30 .25 .25 .26 .26 .25 .22 .23 .23 .25 .25 .40 .83 .80 .72 .81 .81 .81
0
.10 .92 .95 .82 .59 .75
[3] 2fsz.b .30 .43 .30 .42 .31 .32 .34 .30 .30 .33 .45 .30 .29 .31 .34 .28 .28 .29 .30 .29 .25 .25 .26 .27 .28 .45 .84 .80 .72 .78 .80 .82 .10
0
.88 .96 .81 .61 .80
[4] 1l2j.a .85 .71 .83 .73 .86 .82 .82 .84 .85 .82 .69 .84 .84 .85 .84 .82 .85 .86 .85 .85 .85 .84 .86 .84 .84 .70 .31 .31 .36 .27 .30 .28 .92 .88
0
.54 .64 .65 .74
[5] 1nde.a .83 .78 .81 .73 .85 .81 .82 .84 .84 .80 .71 .84 .83 .84 .85 .84 .86 .88 .86 .87 .85 .83 .84 .84 .83 .76 .48 .49 .52 .45 .47 .46 .95 .96 .54
0
.38 .65 .64
[6] 2yly.b .64 .73 .63 .67 .65 .67 .68 .64 .64 .67 .67 .62 .61 .64 .63 .63 .65 .66 .65 .66 .63 .61 .61 .61 .62 .65 .51 .51 .43 .51 .51 .53 .82 .81 .64 .38
0
.63 .53
[7] 5toa.a .52 .50 .52 .45 .51 .48 .49 .52 .51 .50 .44 .54 .51 .51 .54 .50 .51 .49 .48 .48 .50 .52 .52 .48 .49 .51 .61 .59 .60 .57 .58 .56 .59 .61 .65 .65 .63
0
.57
[8] 1qkn.a .58 .78 .56 .71 .59 .62 .61 .57 .59 .57 .73 .56 .55 .57 .57 .58 .59 .60 .59 .60 .60 .57 .58 .60 .59 .69 .65 .67 .53 .64 .63 .64 .75 .80 .74 .64 .53 .57
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.8 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1u3q.b
1u3r.b
1u3s.a
1u9e.b
1x76.b
1x78.b
1x7b.a
1x7j.b
1yy4.b
1yye.a
1zaf.b
2j7x.a
2j7y.a
2nv7.b
2yjd.a
3oll.a
3ols.a
3omo.a
3omp.a
3omq.a
4j24.a
4j24.b
4j24.d
4j26.a
4j26.b
4zi1.a
1qkm.a
2giu.a
2i0g.a
2jj3.b
2qtu.b
2z4b.b
1hj1.a
2fsz.b
1l2j.a
1nde.a
2yly.b
5toa.a
1qkn.a
[1] 1u3q.b
0
0.7 0.8 0.7 0.8 0.8 0.8 0.7 0.8 0.9 0.8 0.7 0.7 0.8 0.9 1.0 0.9 0.9 0.9 0.9 0.9 0.7 0.8 0.8 0.8 0.8 4.8 4.7 4.7 4.7 4.6 4.6 0.7 12 4.8 7.0 7.2 4.2 7.1
[1] 1u3r.b 0.7
0
0.8 0.5 0.3 2.3 2.3 0.4 0.4 2.3 0.7 1.1 1.1 0.6 0.7 1.3 0.8 0.9 0.9 0.8 1.4 1.1 0.7 1.2 1.3 1.4 5.5 5.4 5.0 5.5 5.3 5.3 0.9 12 5.9 8.2 7.6 6.6 6.9
[1] 1u3s.a 0.8 0.8
0
0.8 0.9 0.9 0.4 0.9 0.8 0.4 0.9 0.7 0.7 0.8 0.8 0.9 0.7 0.8 0.8 0.7 0.8 0.8 0.8 0.8 0.8 0.8 4.5 4.5 4.5 4.5 4.4 4.4 0.9 12 4.6 6.8 6.9 4.2 6.9
[1] 1u9e.b 0.7 0.5 0.8
0
0.3 2.4 2.3 0.5 0.3 2.3 0.7 1.2 1.2 0.6 0.8 1.3 0.9 0.9 0.9 0.9 1.4 1.2 0.8 1.3 1.3 1.6 5.5 5.4 5.0 5.5 5.3 5.3 0.9 12 5.8 8.2 7.6 6.5 6.9
[1] 1x76.b 0.8 0.3 0.9 0.3
0
0.3 0.9 0.4 0.3 1.0 0.3 0.6 0.6 0.5 0.8 1.0 0.9 0.9 0.9 0.9 1.0 0.8 0.8 0.9 0.9 0.6 4.6 4.5 4.5 4.5 4.4 4.4 0.8 12 4.7 6.8 7.0 4.2 6.9
[1] 1x78.b 0.8 2.3 0.9 2.4 0.3
0
0.9 0.3 0.4 1.0 2.2 0.7 0.7 0.6 0.8 1.1 0.9 0.9 0.9 0.9 1.3 1.0 0.7 1.0 1.0 2.0 6.7 6.6 5.3 6.5 6.6 6.5 0.9 12 6.5 9.0 7.8 6.9 6.9
[1] 1x7b.a 0.8 2.3 0.4 2.3 0.9 0.9
0
0.9 0.9 0.3 2.2 0.8 0.8 0.8 0.8 0.8 0.7 0.7 0.7 0.7 1.0 0.9 0.7 0.8 0.8 1.9 6.5 6.4 5.0 6.3 6.4 6.3 0.9 13 6.3 8.9 7.5 6.7 6.8
[1] 1x7j.b 0.7 0.4 0.9 0.5 0.4 0.3 0.9
0
0.4 0.9 0.4 0.5 0.5 0.5 0.7 1.0 0.9 0.9 0.9 0.9 0.9 0.7 0.7 0.8 0.8 0.6 4.6 4.5 4.5 4.5 4.3 4.4 0.8 12 4.6 6.7 7.0 4.1 6.8
[1] 1yy4.b 0.8 0.4 0.8 0.3 0.3 0.4 0.9 0.4
0
0.9 0.3 0.6 0.6 0.5 0.8 1.0 0.8 0.9 0.9 0.9 1.0 0.8 0.7 0.9 0.9 0.6 4.6 4.5 4.5 4.5 4.4 4.4 0.8 12 4.7 6.8 7.0 4.2 6.9
[1] 1yye.a 0.9 2.3 0.4 2.3 1.0 1.0 0.3 0.9 0.9
0
2.2 0.8 0.8 0.8 0.8 0.9 0.8 0.8 0.8 0.8 1.1 1.0 0.8 0.8 0.8 1.9 6.4 6.3 5.0 6.2 6.3 6.3 0.9 13 6.2 8.8 7.5 6.7 6.7
[1] 1zaf.b 0.8 0.7 0.9 0.7 0.3 2.2 2.2 0.4 0.3 2.2
0
1.2 1.2 0.5 0.7 1.3 0.9 0.9 0.9 0.9 1.4 1.2 0.8 1.3 1.3 0.9 5.5 5.4 4.9 5.4 5.3 5.3 0.9 12 5.5 8.1 7.5 5.8 6.8
[1] 2j7x.a 0.7 1.1 0.7 1.2 0.6 0.7 0.8 0.5 0.6 0.8 1.2
0
0.2 0.6 0.5 0.7 0.6 0.6 0.6 0.6 0.8 0.5 0.4 0.7 0.7 1.1 5.3 5.2 5.2 5.2 5.1 5.1 0.8 12 5.3 7.6 7.8 4.9 6.8
[1] 2j7y.a 0.7 1.1 0.7 1.2 0.6 0.7 0.8 0.5 0.6 0.8 1.2 0.2
0
0.6 0.6 0.7 0.6 0.6 0.6 0.6 0.7 0.5 0.3 0.6 0.6 1.1 5.3 5.2 5.3 5.2 5.1 5.2 0.8 12 5.3 7.6 7.8 4.9 6.9
[1] 2nv7.b 0.8 0.6 0.8 0.6 0.5 0.6 0.8 0.5 0.5 0.8 0.5 0.6 0.6
0
0.7 0.9 0.8 0.8 0.8 0.8 0.9 0.7 0.7 0.8 0.8 0.5 4.4 4.3 4.3 4.4 4.2 4.2 0.7 12 4.5 6.5 6.8 4.1 6.7
[1] 2yjd.a 0.9 0.7 0.8 0.8 0.8 0.8 0.8 0.7 0.8 0.8 0.7 0.5 0.6 0.7
0
0.7 0.7 0.7 0.7 0.7 0.8 0.6 0.6 0.7 0.7 0.7 4.4 4.3 4.3 4.3 4.2 4.2 0.9 12 4.5 6.6 6.8 4.0 6.7
[1] 3oll.a 1.0 1.3 0.9 1.3 1.0 1.1 0.8 1.0 1.0 0.9 1.3 0.7 0.7 0.9 0.7
0
0.5 0.6 0.5 0.5 0.6 0.6 0.5 0.5 0.5 1.1 5.1 5.0 5.1 5.0 4.9 5.0 0.8 12 5.2 7.5 7.7 4.8 6.8
[1] 3ols.a 0.9 0.8 0.7 0.9 0.9 0.9 0.7 0.9 0.8 0.8 0.9 0.6 0.6 0.8 0.7 0.5
0
0.2 0.2 0.2 0.5 0.5 0.5 0.5 0.5 0.7 4.5 4.4 4.4 4.4 4.3 4.3 0.9 12 4.5 6.7 6.9 4.0 6.8
[1] 3omo.a 0.9 0.9 0.8 0.9 0.9 0.9 0.7 0.9 0.9 0.8 0.9 0.6 0.6 0.8 0.7 0.6 0.2
0
0.1 0.1 0.5 0.6 0.5 0.5 0.5 0.8 4.5 4.4 4.5 4.5 4.3 4.4 0.9 12 4.6 6.8 6.9 4.0 6.9
[1] 3omp.a 0.9 0.9 0.8 0.9 0.9 0.9 0.7 0.9 0.9 0.8 0.9 0.6 0.6 0.8 0.7 0.5 0.2 0.1
0
0.1 0.5 0.5 0.5 0.5 0.5 0.8 4.5 4.5 4.5 4.5 4.3 4.4 0.9 12 4.6 6.8 6.9 4.0 6.9
[1] 3omq.a 0.9 0.8 0.7 0.9 0.9 0.9 0.7 0.9 0.9 0.8 0.9 0.6 0.6 0.8 0.7 0.5 0.2 0.1 0.1
0
0.5 0.5 0.5 0.5 0.5 0.8 4.5 4.4 4.5 4.5 4.3 4.4 0.9 12 4.6 6.8 6.9 4.0 6.9
[1] 4j24.a 0.9 1.4 0.8 1.4 1.0 1.3 1.0 0.9 1.0 1.1 1.4 0.8 0.7 0.9 0.8 0.6 0.5 0.5 0.5 0.5
0
0.5 0.4 0.7 0.7 1.3 5.4 5.3 5.4 5.3 5.2 5.3 0.8 12 5.4 7.8 7.9 4.9 7.0
[1] 4j24.b 0.7 1.1 0.8 1.2 0.8 1.0 0.9 0.7 0.8 1.0 1.2 0.5 0.5 0.7 0.6 0.6 0.5 0.6 0.5 0.5 0.5
0
0.1 0.7 0.7 1.1 5.3 5.3 5.3 5.3 5.2 5.2 0.7 12 5.4 7.7 7.9 4.9 6.9
[1] 4j24.d 0.8 0.7 0.8 0.8 0.8 0.7 0.7 0.7 0.7 0.8 0.8 0.4 0.3 0.7 0.6 0.5 0.5 0.5 0.5 0.5 0.4 0.1
0
0.3 0.3 0.6 4.6 4.5 4.6 4.6 4.4 4.5 0.7 12 4.7 6.8 7.0 4.1 6.9
[1] 4j26.a 0.8 1.2 0.8 1.3 0.9 1.0 0.8 0.8 0.9 0.8 1.3 0.7 0.6 0.8 0.7 0.5 0.5 0.5 0.5 0.5 0.7 0.7 0.3
0
0 1.1 5.2 5.1 5.1 5.1 5.0 5.0 0.7 12 5.2 7.5 7.7 4.8 6.9
[1] 4j26.b 0.8 1.3 0.8 1.3 0.9 1.0 0.8 0.8 0.9 0.8 1.3 0.7 0.6 0.8 0.7 0.5 0.5 0.5 0.5 0.5 0.7 0.7 0.3 0
0
1.1 5.2 5.1 5.1 5.1 5.0 5.0 0.7 12 5.2 7.5 7.7 4.8 6.9
[1] 4zi1.a 0.8 1.4 0.8 1.6 0.6 2.0 1.9 0.6 0.6 1.9 0.9 1.1 1.1 0.5 0.7 1.1 0.7 0.8 0.8 0.8 1.3 1.1 0.6 1.1 1.1
0
5.6 5.5 4.8 5.6 5.5 5.5 0.7 12 6.1 8.1 7.4 7.1 6.6
[2] 1qkm.a 4.8 5.5 4.5 5.5 4.6 6.7 6.5 4.6 4.6 6.4 5.5 5.3 5.3 4.4 4.4 5.1 4.5 4.5 4.5 4.5 5.4 5.3 4.6 5.2 5.2 5.6
0
0.5 0.4 0.7 0.4 0.4 0.8 12 1.4 3.6 3.4 3.7 3.2
[2] 2giu.a 4.7 5.4 4.5 5.4 4.5 6.6 6.4 4.5 4.5 6.3 5.4 5.2 5.2 4.3 4.3 5.0 4.4 4.4 4.5 4.4 5.3 5.3 4.5 5.1 5.1 5.5 0.5
0
0.5 0.4 0.4 0.4 0.9 11 1.3 3.8 3.4 3.8 3.4
[2] 2i0g.a 4.7 5.0 4.5 5.0 4.5 5.3 5.0 4.5 4.5 5.0 4.9 5.2 5.3 4.3 4.3 5.1 4.4 4.5 4.5 4.5 5.4 5.3 4.6 5.1 5.1 4.8 0.4 0.5
0
0.3 0.3 0.3 0.8 11 1.1 3.0 3.1 3.2 3.2
[2] 2jj3.b 4.7 5.5 4.5 5.5 4.5 6.5 6.3 4.5 4.5 6.2 5.4 5.2 5.2 4.4 4.3 5.0 4.4 4.5 4.5 4.5 5.3 5.3 4.6 5.1 5.1 5.6 0.7 0.4 0.3
0
0.1 0.2 0.8 12 1.3 3.7 3.5 3.9 3.2
[2] 2qtu.b 4.6 5.3 4.4 5.3 4.4 6.6 6.4 4.3 4.4 6.3 5.3 5.1 5.1 4.2 4.2 4.9 4.3 4.3 4.3 4.3 5.2 5.2 4.4 5.0 5.0 5.5 0.4 0.4 0.3 0.1
0
0.1 0.8 11 1.2 3.6 2.9 3.6 3.2
[2] 2z4b.b 4.6 5.3 4.4 5.3 4.4 6.5 6.3 4.4 4.4 6.3 5.3 5.1 5.2 4.2 4.2 5.0 4.3 4.4 4.4 4.4 5.3 5.2 4.5 5.0 5.0 5.5 0.4 0.4 0.3 0.2 0.1
0
0.8 11 1.3 3.7 3.1 3.7 3.3
[3] 1hj1.a 0.7 0.9 0.9 0.9 0.8 0.9 0.9 0.8 0.8 0.9 0.9 0.8 0.8 0.7 0.9 0.8 0.9 0.9 0.9 0.9 0.8 0.7 0.7 0.7 0.7 0.7 0.8 0.9 0.8 0.8 0.8 0.8
0
0.7 1.1 0.9 1.1 0.8 0.8
[3] 2fsz.b 12 12 12 12 12 12 13 12 12 13 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 11 11 12 11 11 0.7
0
12 12 11 13 10
[4] 1l2j.a 4.8 5.9 4.6 5.8 4.7 6.5 6.3 4.6 4.7 6.2 5.5 5.3 5.3 4.5 4.5 5.2 4.5 4.6 4.6 4.6 5.4 5.4 4.7 5.2 5.2 6.1 1.4 1.3 1.1 1.3 1.2 1.3 1.1 12
0
3.8 3.6 3.8 3.5
[5] 1nde.a 7.0 8.2 6.8 8.2 6.8 9.0 8.9 6.7 6.8 8.8 8.1 7.6 7.6 6.5 6.6 7.5 6.7 6.8 6.8 6.8 7.8 7.7 6.8 7.5 7.5 8.1 3.6 3.8 3.0 3.7 3.6 3.7 0.9 12 3.8
0
1.8 5.4 1.4
[6] 2yly.b 7.2 7.6 6.9 7.6 7.0 7.8 7.5 7.0 7.0 7.5 7.5 7.8 7.8 6.8 6.8 7.7 6.9 6.9 6.9 6.9 7.9 7.9 7.0 7.7 7.7 7.4 3.4 3.4 3.1 3.5 2.9 3.1 1.1 11 3.6 1.8
0
5.6 1.9
[7] 5toa.a 4.2 6.6 4.2 6.5 4.2 6.9 6.7 4.1 4.2 6.7 5.8 4.9 4.9 4.1 4.0 4.8 4.0 4.0 4.0 4.0 4.9 4.9 4.1 4.8 4.8 7.1 3.7 3.8 3.2 3.9 3.6 3.7 0.8 13 3.8 5.4 5.6
0
5.1
[8] 1qkn.a 7.1 6.9 6.9 6.9 6.9 6.9 6.8 6.8 6.9 6.7 6.8 6.8 6.9 6.7 6.7 6.8 6.8 6.9 6.9 6.9 7.0 6.9 6.9 6.9 6.9 6.6 3.2 3.4 3.2 3.2 3.2 3.3 0.8 10 3.5 1.4 1.9 5.1
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 1.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1u3q.b
1u3r.b
1u3s.a
1u9e.b
1x76.b
1x78.b
1x7b.a
1x7j.b
1yy4.b
1yye.a
1zaf.b
2j7x.a
2j7y.a
2nv7.b
2yjd.a
3oll.a
3ols.a
3omo.a
3omp.a
3omq.a
4j24.a
4j24.b
4j24.d
4j26.a
4j26.b
4zi1.a
1qkm.a
2giu.a
2i0g.a
2jj3.b
2qtu.b
2z4b.b
1hj1.a
2fsz.b
1l2j.a
1nde.a
2yly.b
5toa.a
1qkn.a
[1] 1u3q.b
0
1.1 1.2 1.1 1.5 1.5 1.2 1.5 1.5 1.3 1.6 1.4 1.3 1.6 1.4 1.5 1.3 1.3 1.3 1.3 1.4 1.2 1.4 1.4 1.4 1.5 5.0 4.9 4.9 4.8 4.7 4.7 1.0 12 4.6 7.0 6.9 4.5 6.3
[1] 1u3r.b 1.1
0
1.3 1.2 1.3 2.7 2.5 1.3 1.3 2.5 1.5 1.5 1.4 1.4 1.3 1.8 1.3 1.4 1.3 1.3 1.8 1.6 1.3 1.7 1.7 2.3 5.8 5.6 5.3 5.6 5.5 5.5 1.1 12 5.8 8.3 7.6 7.1 6.2
[1] 1u3s.a 1.2 1.3
0
1.3 1.8 1.7 0.7 1.8 1.7 0.8 1.7 1.4 1.4 1.8 1.1 1.3 1.3 1.3 1.3 1.3 1.3 1.5 1.3 1.4 1.4 1.4 4.8 4.7 4.7 4.6 4.5 4.5 1.3 12 4.4 6.8 6.6 4.5 6.1
[1] 1u9e.b 1.1 1.2 1.3
0
1.2 2.8 2.7 1.3 1.2 2.7 1.3 1.6 1.5 1.4 1.4 1.9 1.4 1.4 1.4 1.4 1.9 1.7 1.4 1.8 1.8 2.1 5.8 5.6 5.2 5.6 5.5 5.5 1.1 12 5.7 8.2 7.6 7.2 6.2
[1] 1x76.b 1.5 1.3 1.8 1.2
0
0.4 1.7 0.5 0.4 1.7 0.4 1.3 1.2 0.7 1.8 1.5 1.3 1.4 1.3 1.3 1.4 1.1 1.3 1.5 1.5 1.1 4.8 4.7 4.7 4.6 4.5 4.5 1.2 12 4.5 6.7 6.7 4.4 6.2
[1] 1x78.b 1.5 2.7 1.7 2.8 0.4
0
1.7 0.5 0.5 1.7 2.5 1.3 1.2 0.8 1.8 1.6 1.3 1.4 1.3 1.3 1.6 1.3 1.3 1.7 1.8 2.7 6.7 6.5 5.4 6.4 6.4 6.4 1.3 12 6.3 8.9 7.6 6.9 6.2
[1] 1x7b.a 1.2 2.5 0.7 2.7 1.7 1.7
0
1.7 1.7 0.5 2.9 1.4 1.4 1.7 1.1 1.3 1.3 1.3 1.2 1.2 1.3 1.4 1.2 1.5 1.5 2.7 6.5 6.4 5.3 6.3 6.3 6.3 1.2 13 6.1 8.8 7.4 6.8 6.1
[1] 1x7j.b 1.5 1.3 1.8 1.3 0.5 0.5 1.7
0
0.6 1.7 0.6 1.3 1.2 0.7 1.8 1.5 1.3 1.4 1.4 1.3 1.4 1.1 1.3 1.5 1.5 1.2 4.8 4.7 4.7 4.6 4.4 4.5 1.2 12 4.5 6.7 6.7 4.3 6.2
[1] 1yy4.b 1.5 1.3 1.7 1.2 0.4 0.5 1.7 0.6
0
1.7 0.5 1.3 1.2 0.7 1.8 1.5 1.3 1.4 1.3 1.3 1.4 1.2 1.3 1.5 1.5 1.2 4.8 4.7 4.7 4.6 4.4 4.5 1.2 12 4.5 6.7 6.7 4.4 6.2
[1] 1yye.a 1.3 2.5 0.8 2.7 1.7 1.7 0.5 1.7 1.7
0
2.8 1.5 1.5 1.7 1.2 1.4 1.4 1.4 1.4 1.3 1.4 1.5 1.3 1.6 1.6 2.7 6.5 6.3 5.2 6.2 6.2 6.2 1.3 13 6.1 8.7 7.4 6.7 6.0
[1] 1zaf.b 1.6 1.5 1.7 1.3 0.4 2.5 2.9 0.6 0.5 2.8
0
1.6 1.6 0.7 1.8 1.9 1.3 1.4 1.3 1.3 1.9 1.7 1.3 1.8 1.8 1.5 5.7 5.5 5.2 5.5 5.4 5.4 1.3 12 5.5 8.0 7.5 5.9 6.1
[1] 2j7x.a 1.4 1.5 1.4 1.6 1.3 1.3 1.4 1.3 1.3 1.5 1.6
0
0.4 1.2 1.3 1.1 1.0 1.1 1.1 1.1 1.1 1.1 1.0 1.2 1.2 1.3 5.3 5.2 5.2 5.2 5.0 5.1 1.2 12 5.0 7.4 7.3 5.0 6.1
[1] 2j7y.a 1.3 1.4 1.4 1.5 1.2 1.2 1.4 1.2 1.2 1.5 1.6 0.4
0
1.2 1.2 1.0 0.9 1.0 0.9 0.9 1.0 1.0 0.9 1.1 1.1 1.3 5.3 5.2 5.2 5.2 5.1 5.1 1.1 12 5.0 7.5 7.3 5.0 6.1
[1] 2nv7.b 1.6 1.4 1.8 1.4 0.7 0.8 1.7 0.7 0.7 1.7 0.7 1.2 1.2
0
1.8 1.4 1.3 1.3 1.2 1.2 1.4 1.1 1.3 1.4 1.4 1.1 4.7 4.5 4.5 4.5 4.3 4.4 1.1 12 4.4 6.6 6.5 4.3 6.0
[1] 2yjd.a 1.4 1.3 1.1 1.4 1.8 1.8 1.1 1.8 1.8 1.2 1.8 1.3 1.2 1.8
0
1.2 1.3 1.4 1.3 1.3 1.2 1.4 1.2 1.3 1.3 1.3 4.7 4.6 4.6 4.6 4.4 4.5 1.3 12 4.3 6.7 6.6 4.5 6.0
[1] 3oll.a 1.5 1.8 1.3 1.9 1.5 1.6 1.3 1.5 1.5 1.4 1.9 1.1 1.0 1.4 1.2
0
0.9 1.0 0.9 0.9 0.8 1.0 0.8 1.1 1.1 1.8 5.5 5.4 5.4 5.3 5.2 5.3 1.2 12 5.3 7.8 7.6 5.3 6.0
[1] 3ols.a 1.3 1.3 1.3 1.4 1.3 1.3 1.3 1.3 1.3 1.4 1.3 1.0 0.9 1.3 1.3 0.9
0
0.5 0.3 0.3 0.9 0.9 1.1 1.1 1.1 1.1 4.8 4.7 4.7 4.7 4.5 4.6 1.3 12 4.4 6.8 6.7 4.4 6.1
[1] 3omo.a 1.3 1.4 1.3 1.4 1.4 1.4 1.3 1.4 1.4 1.4 1.4 1.1 1.0 1.3 1.4 1.0 0.5
0
0.3 0.4 1.0 1.0 1.1 1.1 1.1 1.2 4.9 4.8 4.7 4.7 4.6 4.6 1.3 12 4.4 6.8 6.7 4.5 6.2
[1] 3omp.a 1.3 1.3 1.3 1.4 1.3 1.3 1.2 1.4 1.3 1.4 1.3 1.1 0.9 1.2 1.3 0.9 0.3 0.3
0
0.2 1.0 0.9 1.1 1.1 1.1 1.2 4.9 4.8 4.8 4.7 4.6 4.6 1.3 12 4.5 6.9 6.7 4.4 6.2
[1] 3omq.a 1.3 1.3 1.3 1.4 1.3 1.3 1.2 1.3 1.3 1.3 1.3 1.1 0.9 1.2 1.3 0.9 0.3 0.4 0.2
0
0.9 0.9 1.1 1.1 1.1 1.2 4.8 4.8 4.7 4.7 4.6 4.6 1.3 12 4.4 6.8 6.7 4.4 6.2
[1] 4j24.a 1.4 1.8 1.3 1.9 1.4 1.6 1.3 1.4 1.4 1.4 1.9 1.1 1.0 1.4 1.2 0.8 0.9 1.0 1.0 0.9
0
0.7 0.5 0.9 0.9 1.8 5.7 5.5 5.6 5.5 5.4 5.5 1.2 13 5.4 8.0 7.7 5.3 6.2
[1] 4j24.b 1.2 1.6 1.5 1.7 1.1 1.3 1.4 1.1 1.2 1.5 1.7 1.1 1.0 1.1 1.4 1.0 0.9 1.0 0.9 0.9 0.7
0
0.7 1.1 1.1 1.8 5.7 5.5 5.6 5.5 5.4 5.4 1.1 12 5.5 8.0 7.7 5.3 6.2
[1] 4j24.d 1.4 1.3 1.3 1.4 1.3 1.3 1.2 1.3 1.3 1.3 1.3 1.0 0.9 1.3 1.2 0.8 1.1 1.1 1.1 1.1 0.5 0.7
0
0.6 0.6 0.9 4.8 4.8 4.8 4.8 4.6 4.7 1.2 12 4.5 6.9 6.8 4.5 6.2
[1] 4j26.a 1.4 1.7 1.4 1.8 1.5 1.7 1.5 1.5 1.5 1.6 1.8 1.2 1.1 1.4 1.3 1.1 1.1 1.1 1.1 1.1 0.9 1.1 0.6
0
0 1.5 5.6 5.5 5.5 5.5 5.4 5.4 1.1 12 5.4 7.9 7.7 5.3 6.2
[1] 4j26.b 1.4 1.7 1.4 1.8 1.5 1.8 1.5 1.5 1.5 1.6 1.8 1.2 1.1 1.4 1.3 1.1 1.1 1.1 1.1 1.1 0.9 1.1 0.6 0
0
1.5 5.6 5.5 5.5 5.5 5.4 5.4 1.1 12 5.4 7.9 7.7 5.3 6.2
[1] 4zi1.a 1.5 2.3 1.4 2.1 1.1 2.7 2.7 1.2 1.2 2.7 1.5 1.3 1.3 1.1 1.3 1.8 1.1 1.2 1.2 1.2 1.8 1.8 0.9 1.5 1.5
0
5.9 5.8 5.1 5.8 5.6 5.7 1.0 12 5.9 8.1 7.3 7.7 5.9
[2] 1qkm.a 5.0 5.8 4.8 5.8 4.8 6.7 6.5 4.8 4.8 6.5 5.7 5.3 5.3 4.7 4.7 5.5 4.8 4.9 4.9 4.8 5.7 5.7 4.8 5.6 5.6 5.9
0
1.0 0.8 1.1 0.9 0.9 1.1 11 1.8 3.9 3.6 3.8 3.0
[2] 2giu.a 4.9 5.6 4.7 5.6 4.7 6.5 6.4 4.7 4.7 6.3 5.5 5.2 5.2 4.5 4.6 5.4 4.7 4.8 4.8 4.8 5.5 5.5 4.8 5.5 5.5 5.8 1.0
0
0.9 0.9 0.9 0.9 1.3 11 2.0 4.2 3.7 4.0 3.1
[2] 2i0g.a 4.9 5.3 4.7 5.2 4.7 5.4 5.3 4.7 4.7 5.2 5.2 5.2 5.2 4.5 4.6 5.4 4.7 4.7 4.8 4.7 5.6 5.6 4.8 5.5 5.5 5.1 0.8 0.9
0
0.8 0.8 0.7 1.3 11 1.7 3.6 3.4 3.4 3.0
[2] 2jj3.b 4.8 5.6 4.6 5.6 4.6 6.4 6.3 4.6 4.6 6.2 5.5 5.2 5.2 4.5 4.6 5.3 4.7 4.7 4.7 4.7 5.5 5.5 4.8 5.5 5.5 5.8 1.1 0.9 0.8
0
0.4 0.4 1.1 11 1.8 4.1 3.7 4.0 3.0
[2] 2qtu.b 4.7 5.5 4.5 5.5 4.5 6.4 6.3 4.4 4.4 6.2 5.4 5.0 5.1 4.3 4.4 5.2 4.5 4.6 4.6 4.6 5.4 5.4 4.6 5.4 5.4 5.6 0.9 0.9 0.8 0.4
0
0.2 1.1 10 1.8 4.0 3.2 3.8 3.0
[2] 2z4b.b 4.7 5.5 4.5 5.5 4.5 6.4 6.3 4.5 4.5 6.2 5.4 5.1 5.1 4.4 4.5 5.3 4.6 4.6 4.6 4.6 5.5 5.4 4.7 5.4 5.4 5.7 0.9 0.9 0.7 0.4 0.2
0
1.1 11 1.8 4.1 3.4 3.8 3.0
[3] 1hj1.a 1.0 1.1 1.3 1.1 1.2 1.3 1.2 1.2 1.2 1.3 1.3 1.2 1.1 1.1 1.3 1.2 1.3 1.3 1.3 1.3 1.2 1.1 1.2 1.1 1.1 1.0 1.1 1.3 1.3 1.1 1.1 1.1
0
1.1 1.4 1.4 1.4 1.2 1.0
[3] 2fsz.b 12 12 12 12 12 12 13 12 12 13 12 12 12 12 12 12 12 12 12 12 13 12 12 12 12 12 11 11 11 11 10 11 1.1
0
12 11 11 13 8.4
[4] 1l2j.a 4.6 5.8 4.4 5.7 4.5 6.3 6.1 4.5 4.5 6.1 5.5 5.0 5.0 4.4 4.3 5.3 4.4 4.4 4.5 4.4 5.4 5.5 4.5 5.4 5.4 5.9 1.8 2.0 1.7 1.8 1.8 1.8 1.4 12
0
3.9 3.7 3.8 3.2
[5] 1nde.a 7.0 8.3 6.8 8.2 6.7 8.9 8.8 6.7 6.7 8.7 8.0 7.4 7.5 6.6 6.7 7.8 6.8 6.8 6.9 6.8 8.0 8.0 6.9 7.9 7.9 8.1 3.9 4.2 3.6 4.1 4.0 4.1 1.4 11 3.9
0
2.8 5.5 1.7
[6] 2yly.b 6.9 7.6 6.6 7.6 6.7 7.6 7.4 6.7 6.7 7.4 7.5 7.3 7.3 6.5 6.6 7.6 6.7 6.7 6.7 6.7 7.7 7.7 6.8 7.7 7.7 7.3 3.6 3.7 3.4 3.7 3.2 3.4 1.4 11 3.7 2.8
0
5.5 2.0
[7] 5toa.a 4.5 7.1 4.5 7.2 4.4 6.9 6.8 4.3 4.4 6.7 5.9 5.0 5.0 4.3 4.5 5.3 4.4 4.5 4.4 4.4 5.3 5.3 4.5 5.3 5.3 7.7 3.8 4.0 3.4 4.0 3.8 3.8 1.2 13 3.8 5.5 5.5
0
4.4
[8] 1qkn.a 6.3 6.2 6.1 6.2 6.2 6.2 6.1 6.2 6.2 6.0 6.1 6.1 6.1 6.0 6.0 6.0 6.1 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 5.9 3.0 3.1 3.0 3.0 3.0 3.0 1.0 8.4 3.2 1.7 2.0 4.4
0
[Binding site full-atom RMSD matrix]







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