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ERG7_HUMAN_1_732

Lanosterol synthase [Terpene cyclase/mutase family]

Composition of the binding site

Protein chains monomer
A1 (ERG7_HUMAN):98, 192, 230, 232, 233, 236, 338, 380, 381, 387, 444, 453, 455, 456, 502, 503, 524, 533, 581, 696, 697, 702, 70498, 192, 230, 232, 233, 236, 338, 380, 381, 387, 444, 453, 455, 456, 502, 503, 524, 533, 581, 696, 697, 702, 704

Full PDB list

1w6j, 1w6k

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
Y
9
8
W
1
9
2
W
2
3
0
H
2
3
2
C
2
3
3
V
2
3
6
I
3
3
8
T
3
8
1
W
3
8
7
F
4
4
4
V
4
5
3
D
4
5
5
C
4
5
6
T
5
0
2
Y
5
0
3
I
5
2
4
C
5
3
3
W
5
8
1
F
6
9
6
N
6
9
7
Y
7
0
4
[1]1w6j.a r7128 . . . . . . . . . . . . . . . . . . . . .
[1]1w6k.a lan31 . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
Y
9
8
W
1
9
2
W
2
3
0
H
2
3
2
C
2
3
3
V
2
3
6
I
3
3
8
G
3
8
0
T
3
8
1
W
3
8
7
F
4
4
4
V
4
5
3
D
4
5
5
C
4
5
6
T
5
0
2
Y
5
0
3
I
5
2
4
C
5
3
3
W
5
8
1
F
6
9
6
N
6
9
7
I
7
0
2
Y
7
0
4
[1]1w6j.a . . . . . . . . . . . . . . . . . . . . . . .
[1]1w6k.a . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1w6j.a:r71
1w6k.a:lan
[1] 1w6j.a
0.1
0.4
[1] 1w6k.a 0.2
0.4
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1w6j.a
1w6k.a
[1] 1w6j.a
0
.02
[1] 1w6k.a .02
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1w6j.a
1w6k.a
[1] 1w6j.a
0
0.1
[1] 1w6k.a 0.1
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1w6j.a
1w6k.a
[1] 1w6j.a
0
0.2
[1] 1w6k.a 0.2
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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