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ERBB4_HUMAN_695_999

Receptor tyrosine-protein kinase erbB-4 [Protein kinase superfamily. Tyr protein kinase family. EGF receptor subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (ERBB4_HUMAN):D: Protein kinase (724, 732, 749:751, 768, 772, 781:783, 794:799, 802, 803, 806, 850, 860:862, 864)724, 732, 749:751, 768, 772, 781:783, 794:799, 802, 803, 806, 850, 860:862, 864

Full PDB list

2r4b, 3bbt, 3bce

Pocket contact map

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PDB.ch
   
ligand
A1
V
7
3
2
A
7
4
9
I
7
5
0
K
7
5
1
M
7
7
2
V
7
8
1
R
7
8
2
L
7
8
3
L
7
9
4
T
7
9
6
Q
7
9
7
L
7
9
8
M
7
9
9
G
8
0
2
C
8
0
3
E
8
0
6
L
8
5
0
T
8
6
0
D
8
6
1
F
8
6
2
L
8
6
4
[1]2r4b.b gw728 . . . . . . . . . . . . . . * . . . . . .
[1]3bbt.b fmm27 . . . . . . . . . . . . . . . . . . . . .
[1]3bce.b none . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
L
7
2
4
V
7
3
2
A
7
4
9
I
7
5
0
K
7
5
1
E
7
6
8
M
7
7
2
V
7
8
1
R
7
8
2
L
7
8
3
L
7
9
4
V
7
9
5
T
7
9
6
Q
7
9
7
L
7
9
8
M
7
9
9
G
8
0
2
C
8
0
3
E
8
0
6
L
8
5
0
T
8
6
0
D
8
6
1
F
8
6
2
L
8
6
4
[1]2r4b.b . . . . . . . . . . . . . . . . . * . . . . . .
[1]3bbt.b . . . . . . . . . . . . . . . . . . . . . . . .
[1]3bce.b . . . . . . * . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
2r4b.b:gw7
3bbt.b:fmm
3bce.b is apo
[1] 2r4b.b
0.5
0.4 -
[1] 3bbt.b 0.2
0
-
[1] 3bce.b 2.4 2.1
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
2r4b.b
3bbt.b
3bce.b
[1] 2r4b.b
0
.04 .13
[1] 3bbt.b .04
0
.10
[1] 3bce.b .13 .10
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2r4b.b
3bbt.b
3bce.b
[1] 2r4b.b
0
0.7 1.5
[1] 3bbt.b 0.7
0
1.7
[1] 3bce.b 1.5 1.7
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.7 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2r4b.b
3bbt.b
3bce.b
[1] 2r4b.b
0
1.2 2.3
[1] 3bbt.b 1.2
0
2.5
[1] 3bce.b 2.3 2.5
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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