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ELIB_PHYCR_21_118

Beta-elicitin cryptogein [Elicitin family]

Composition of the binding site

Protein chains monomer
A1 (ELIB_PHYCR):32, 35, 36, 38, 39, 44, 53, 55, 56, 61, 62, 67, 70, 79, 80, 83, 95, 96, 100, 102, 104, 107, 108, 11132, 35, 36, 38, 39, 44, 53, 55, 56, 61, 62, 67, 70, 79, 80, 83, 95, 96, 100, 102, 104, 107, 108, 111

Full PDB list

1beo, 1bxm, 1lri

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
Y
3
2
L
3
5
V
3
6
I
3
8
F
4
4
Y
5
3
M
5
5
L
5
6
P
6
2
Y
6
7
M
7
0
M
7
9
I
8
0
I
8
3
V
9
5
P
9
6
L
1
0
0
L
1
0
2
V
1
0
4
Y
1
0
7
F
1
1
1
[1]1bxm.a erg29 . . . . . . . . . . . . . . . . . . . . .
[1]1lri.a clr28 . . . . . . . . . . . . . . . . . . . . .
[2]1beo.a none . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
Y
3
2
L
3
5
V
3
6
I
3
8
L
3
9
F
4
4
Y
5
3
M
5
5
L
5
6
L
6
1
P
6
2
Y
6
7
M
7
0
M
7
9
I
8
0
I
8
3
V
9
5
P
9
6
L
1
0
0
L
1
0
2
V
1
0
4
Y
1
0
7
A
1
0
8
F
1
1
1
[1]1bxm.a . . . . . . . . . . . . . . . . . . . . . . . .
[1]1lri.a . . . . . . . . . . . . . . . . . . . . . . . .
[2]1beo.a . * . . . . . * . . . . . . . . . . . . . * . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1bxm.a:erg
1lri.a:clr
1beo.a is apo
[1] 1bxm.a
0
0 -
[1] 1lri.a 0
0
-
[2] 1beo.a 9.6 9.8
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (2 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1bxm.a
1lri.a
1beo.a
[1] 1bxm.a
0
0 .43
[1] 1lri.a 0
0
.43
[2] 1beo.a .43 .43
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1bxm.a
1lri.a
1beo.a
[1] 1bxm.a
0
0.1 1.0
[1] 1lri.a 0.1
0
1.0
[2] 1beo.a 1.0 1.0
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1bxm.a
1lri.a
1beo.a
[1] 1bxm.a
0
0.4 1.9
[1] 1lri.a 0.4
0
1.9
[2] 1beo.a 1.9 1.9
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

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