DPOL_BPT7_1_704

DNA-directed DNA polymerase [DNA polymerase type-A family]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer[show domain annotation]
 • A1 (DPOL_BPT7):R: Polymerase (429,475:480,506,518,522,526,527,530:533,536,607,654)429,475:480,506,518,522,526,527,530:533,536,607,654

Full PDB list

1skr,1sks,1skw,1sl0,1sl1,1sl2,1t7p,1t8e,1tk0,1tk5,1tk8,1tkd,1x9m,1x9s,1x9w,1zyq,2ajq (redundant pocketome entry)

Contact map

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ligand
A1
R
4
2
9
D
4
7
5
A
4
7
6
S
4
7
7
G
4
7
8
L
4
7
9
E
4
8
0
H
5
0
6
R
5
1
8
K
5
2
2
Y
5
2
6
G
5
2
7
Y
5
3
0
G
5
3
1
A
5
3
2
G
5
3
3
K
5
3
6
H
6
0
7
D
6
5
4
[1]1skr.a dad,mg 30 . . . . . . . . . . . . . . . . . . .
[1]1t7p.a dg3,mg,mg 32 . . . . . . . . . . . . . . . . . . .
[1]1t8e.a dct,G,mg 50 . . . . . . . . . . . . . . . . . . .
[1]1zyq.a dad,mg 30 . . . . . . . . . . . . . . . . A . .
[1]1tk0.a 8og,dct,mg,mg 52 . . . . . . . . . . . . . . . . . . .
[1]1tk8.a A,d3t,mg,mg 51 . . . . . . . . . . . . . . . . . . .
[1]1tkd.a d3t,mg,mg 30 . . . . . . . . . . . . . . . . . . .
[2]1sl1.a ttd 35 . . . . . . . . . . . . . . . . . . .
[3]1sks.a none . . . . . . . . . . . . . . . . . . .
[1]1sl2.a dad,mg,mg 31 . . . . . . . . . . . . . - - - . . .
[1]2ajq.a G 22 . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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