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DPO3B_ECOLI_1_366

Beta sliding clamp [Beta sliding clamp family]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (DPO3B_ECOLI):R: 2 (150:152, 154, 155, 172:177, 240, 242, 243)
R: 3 (245:247, 275, 277:279, 320, 323, 343:346, 360:365)
244, 366
150:152, 154, 155, 172:177, 240, 242:247, 275, 277:279, 320, 323, 343:346, 360:366

Full PDB list

1jqj, 1jql, 1mmi, 1ok7, 1unn, 2pol, 2xur, 3bep, 3d1e, 3d1f, 3d1g, 3f1v, 3pwe, 3q4j, 3q4k, 3q4l, 3qsb, 4k3k, 4k3l, 4k3m, 4k3o, 4k3p, 4k3q, 4k3r, 4k3s, 4k74, 4mjp, 4mjq, 4mjr, 4n94, 4n95, 4n96, 4n97, 4n98, 4n99, 4n9a, 4ovf, 4ovg, 4ovh, 4pnu, 4pnv, 4pnw (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
R
1
5
2
Y
1
5
4
L
1
5
5
T
1
7
2
G
1
7
4
H
1
7
5
R
1
7
6
L
1
7
7
R
2
4
0
P
2
4
2
D
2
4
3
Y
2
4
4
R
2
4
6
V
2
4
7
F
2
7
8
R
2
7
9
N
3
2
0
Y
3
2
3
S
3
4
3
V
3
4
4
S
3
4
6
V
3
6
0
V
3
6
1
M
3
6
2
P
3
6
3
M
3
6
4
R
3
6
5
[1]1jqj.a E-QAMSLFAS67 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1jqj.b QAMSLFA52 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1jql.a E-QAMSLFAS-L75 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1mmi.b none . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1ok7.b RQLVLGL56 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1unn.a ERQLVLGL65 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3d1e.a GQLGLF45 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3d1f.a 323SEQVELEFD108 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3d1g.b 32224 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3f1v.b none A . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3q4j.c aceQLDLF48 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3q4k.b aceQalcDL20052 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3q4l.a aceQalcDLzcl53 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3qsb.a 74332 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4k3k.a sfk19 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4k3l.a aceLF23 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4k3m.a DLF28 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4k3o.a aceQADLF45 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4k3p.a aceQLALF45 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4k3q.a aceQLDAF45 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4k3r.a aceQLDLA42 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4k74.a QLNLF44 . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4k74.b AQLNLF49 . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4mjp.b 27o21 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4mjq.a 27r20 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4mjr.a 0la19 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4n94.a 2ho11 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4n95.a 2hq12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4n96.a 6ni12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4n97.a 2hu12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4n98.a 4fc16 . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4n99.a 2j117 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4n9a.a 2j217 . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4ovf.a 2vg17 . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4ovg.a 2vf21 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4ovh.a 2ve25 . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4pnu.a 2vd32 . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4pnw.a 2vm21 . . . . . . . . . . . . . . . . . . . . . . . . . . -

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
D
1
5
0
V
1
5
1
R
1
5
2
Y
1
5
4
L
1
5
5
T
1
7
2
D
1
7
3
G
1
7
4
H
1
7
5
R
1
7
6
L
1
7
7
R
2
4
0
P
2
4
2
D
2
4
3
Y
2
4
4
R
2
4
5
R
2
4
6
V
2
4
7
N
2
7
5
K
2
7
7
F
2
7
8
R
2
7
9
N
3
2
0
Y
3
2
3
S
3
4
3
V
3
4
4
S
3
4
5
S
3
4
6
V
3
6
0
V
3
6
1
M
3
6
2
P
3
6
3
M
3
6
4
R
3
6
5
L
3
6
6
[1]1jqj.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . * .
[1]1jqj.b . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . * .
[1]1jql.a . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . . * .
[1]1mmi.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . * .
[1]1ok7.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1unn.a . . * . . . . . . . . . . . . . . * . . . . . . . . . . . . . . . . .
[1]3d1e.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * .
[1]3d1f.a . . . . . . . . . . . * . . . . . . . . . . . . . . . . . . . . . * .
[1]3d1g.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . * .
[1]3f1v.b A A A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3q4j.c . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]3q4k.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3q4l.a . . * . . . . . . . . . . . . . * . . . . . . . . . . . . . . . . * .
[1]3qsb.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . .
[1]4k3k.a . . * . . . . . * . . . . . . . . . . . . . . . . . . . . . * . . . .
[1]4k3l.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4k3m.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4k3o.a . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4k3p.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . -
[1]4k3q.a . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . -
[1]4k3r.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . -
[1]4k74.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - -
[1]4k74.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - -
[1]4mjp.b . . . . . . . . . . . . . . . . * * . . . . . . . . . . . . * . . . .
[1]4mjq.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . .
[1]4mjr.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4n94.a . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . .
[1]4n95.a . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . -
[1]4n96.a . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . .
[1]4n97.a . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . .
[1]4n98.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . - -
[1]4n99.a . . * . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . .
[1]4n9a.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . - -
[1]4ovf.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . . - -
[1]4ovg.a . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . .
[1]4ovh.a . . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . - -
[1]4pnu.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - -
[1]4pnw.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . - -

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1jqj.a:E-QAMSLFAS
1jqj.b:QAMSLFA
1jql.a:E-QAMSLFAS-L
1mmi.b is apo
1ok7.b:RQLVLGL
1unn.a:ERQLVLGL
3d1e.a:GQLGLF
3d1f.a:323SEQVELEFD
3d1g.b:322
3f1v.b is apo
3q4j.c:aceQLDLF
3q4k.b:aceQalcDL200
3q4l.a:aceQalcDLzcl
3qsb.a:743
4k3k.a:sfk
4k3l.a:aceLF
4k3m.a:DLF
4k3o.a:aceQADLF
4k3p.a:aceQLALF
4k3q.a:aceQLDAF
4k3r.a:aceQLDLA
4k74.a:QLNLF
4k74.b:AQLNLF
4mjp.b:27o
4mjq.a:27r
4mjr.a:0la
4n94.a:2ho
4n95.a:2hq
4n96.a:6ni
4n97.a:2hu
4n98.a:4fc
4n99.a:2j1
4n9a.a:2j2
4ovf.a:2vg
4ovg.a:2vf
4ovh.a:2ve
4pnu.a:2vd
4pnw.a:2vm
[1] 1jqj.a
0.1
0 0.1 - 1.6 3.3 1.3 3.0 0.2 - 0.8 2.1 0.8 0.1 0.1 0 0.1 0.6 0.7 1.5 1.1 0.1 0.8 0.4 0 0 0 0 0 0 0 0.1 0 0 0.1 0.2 0.2 0.1
[1] 1jqj.b 0.1
0
0.1 - 1.7 3.5 1.5 2.6 0.2 - 0.8 1.6 0.8 0.1 0.1 0 0 0.6 0.5 1.4 0.8 0.1 0.5 0.5 0 0 0 0 0 0 0 0.1 0 0 0 0.1 0.2 0.1
[1] 1jql.a 0.4 0.3
0
- 1.8 3.3 1.6 3.3 0.2 - 1.3 1.7 1.0 0.1 0.6 0.4 0.2 1.0 1.6 2.1 1.6 0.1 0.5 1.1 0.1 0 0 0 0.2 0.2 0 0.4 0 0 0.1 0.3 0.3 0.4
[1] 1mmi.b 1.9 1.7 2.2
-
2.4 2.9 1.9 4.8 0.6 - 1.7 2.0 1.5 1.1 0.9 1.3 1.1 1.4 1.5 1.4 1.4 0.9 1.1 1.0 0.3 1.2 0.5 0.4 0.5 0.4 0.8 0.7 0.6 0.9 1.1 1.1 1.0 1.1
[1] 1ok7.b 0.1 0 0 -
0.1
0.1 0 0.8 0.1 - 0 0.4 0.3 0 0 0 0 0 0 0 0.1 0 0.1 0.4 0 0.1 0 0 0 0 0 0 0 0 0 0 0 0.2
[1] 1unn.a 0.6 0 0.6 - 0.4
0
0.1 1.0 0.9 - 0.2 1.6 1.3 0 0.7 0.3 0.3 0.2 0.2 0.5 0.1 0.6 0.7 1.3 0.4 0.5 0.1 0.1 0.1 0.3 0.4 0.4 0.1 0.5 0.5 0.5 0.5 1.0
[1] 3d1e.a 0.1 0.2 0 - 0.6 0.5
0.2
1.5 0.3 - 0.1 2.0 1.5 0.1 0.1 0.1 0 0 0.2 0.1 0.2 0 0.2 0.9 0.1 0.1 0 0 0.1 0 0 0.2 0 0 0.1 0 0 0.2
[1] 3d1f.a 0.2 0.2 0.1 - 0.6 0.3 0.2
0
0.7 - 0.3 2.7 1.1 1.8 0.5 0.3 0.2 0.1 0.1 0.3 0.2 0 0.3 1.2 0.6 0.1 0.1 0.1 0.3 0.3 0 0.7 0 0.1 0.1 0.2 0.1 0.3
[1] 3d1g.b 1.8 1.1 1.4 - 1.6 1.9 1.5 1.5
0
- 1.3 3.3 3.1 0 0 0.1 0.1 1.1 1.2 1.3 1.1 1.2 1.4 0.5 0 0 0 0 0 0 0 0 0 0 0 0.1 0.3 0.2
[1] 3f1v.b 0.2 0.1 0.1 - 1.1 0.5 0.6 0.4 0.4
-
0.2 0.7 0.2 0.1 0.4 0.2 0.1 0.2 0.2 0.2 0.2 0.1 0.3 0.4 0 0.2 0.1 0 0.4 0.3 0 0.5 0 0.5 0.1 0.3 0.2 0.5
[1] 3q4j.c 0.6 0.5 0.4 - 0.2 0.5 0 1.2 0.1 -
0
0.8 0.2 0.1 0 0 0.1 0 0 0 0.1 0.4 0.6 1.1 0 0 0 0 0.1 0.1 0 0.1 0 0.1 0.1 0.7 0.8 0.2
[1] 3q4k.b 0.8 0.1 0.2 - 0.5 0.9 0.1 0.9 0.3 - 0.1
0
0.1 0 0 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.4 1.2 0.1 0.3 0 0 0.1 0 0.1 0.5 0 0.3 0.4 0.2 0.3 0.6
[1] 3q4l.a 0.7 0.3 0.4 - 1.2 1.2 0.3 2.8 0.4 - 0.3 0.4
0
0.4 0.3 0.1 0.2 0.2 0.1 0.3 0.2 0.5 1.1 1.5 0.2 0.2 0 0 0.1 0.1 0.2 0.3 0 0.3 0.4 1.2 1.1 0.8
[1] 3qsb.a 1.4 0.9 1.1 - 1.3 1.3 1.1 1.7 0.2 - 1.3 1.6 1.0
0
0 0.3 0.4 0.9 1.2 1.2 1.1 0.8 1.1 0.7 0 0.2 0 0 0 0 0.1 0 0 0.1 0.3 0.3 0.9 0.4
[1] 4k3k.a 2.2 1.3 2.0 - 2.2 1.8 2.3 2.3 0.3 - 2.0 2.3 3.0 0
0
0.5 0.3 2.0 2.3 2.3 2.5 1.5 1.7 1.2 0.1 0.3 0 0 0 0 0.1 0 0 0.1 0.3 0.2 0.9 0.5
[1] 4k3l.a 0.7 0.2 0.3 - 0.4 0.3 0.5 1.0 0.1 - 0.5 0.8 0.7 0 0
0
0 0.2 0.4 0.5 0.6 0.1 0.3 1.1 0 0.1 0 0 0 0 0.1 0.1 0 0.1 0.2 0.2 0.5 0.4
[1] 4k3m.a 0.5 0.3 1.0 - 0.3 0.8 0 1.5 0.3 - 0 0.4 0.2 0 0.1 0
0
0 0.1 0 0.1 0 0 1.5 0.1 0.1 0 0 0.3 0.1 0.1 0.2 0 0.2 0.2 0.3 0.2 0.5
[1] 4k3o.a 0.3 0.2 0 - 0.1 0.1 0.1 0.8 0.5 - 0 0.4 0.3 0.1 0.1 0.1 0.1
0
0 0.1 0.2 0.1 0.2 1.3 0.1 0.1 0.1 0 0.3 0.3 0.1 0.3 0 0.1 0.2 0.2 0.1 0.3
[1] 4k3p.a 0.7 0.4 0.5 - 0.6 0.7 0.2 1.2 0.4 - 0 0.4 0.1 0.1 0.1 0.1 0.1 0.2
0.1
0 0 0.1 0.4 0.8 0 0.1 0.1 0 0.5 0.3 0 0.3 0 0 0.1 0.1 0.2 0.2
[1] 4k3q.a 1.5 1.2 1.5 - 0.9 1.5 0.7 1.6 1.0 - 0.5 0.7 0.8 0.4 0.8 0.6 0.7 0.5 0.4
0
0.6 0.3 0.4 1.7 0.2 0.4 0.4 0.1 0.8 0.8 0.2 0.8 0.1 0.2 0.3 0.4 0.3 0.8
[1] 4k3r.a 0.7 0.3 0.2 - 0.1 0.5 0.2 1.0 0.4 - 0.1 0.5 0.1 0.1 0.2 0.1 0.1 0.1 0.1 0.1
0
0.1 0.4 0.5 0.1 0.1 0 0.1 0.2 0.1 0.1 0.5 0.1 0.1 0.1 0.1 0.2 0.4
[1] 4k74.a 0.3 0.1 0.2 - 0.5 0.4 0.2 0.9 0.1 - 0.1 0.7 0.5 0.1 0.1 0.1 0.1 0.1 0.2 0.1 0.3
0
0.2 0.7 0 0 0.1 0 0.3 0.1 0 0.3 0 0 0.1 0.2 0.1 0.2
[1] 4k74.b 0.4 0.1 0.3 - 0.3 0.5 0.2 0.9 0.2 - 0.2 0.4 0.2 0.1 0.1 0.1 0.2 0 0.3 0.1 0.3 0
0
1.0 0 0.1 0 0 0.1 0.1 0.2 0.3 0 0.2 0.1 0.1 0.2 0.5
[1] 4mjp.b 1.3 0.9 1.0 - 2.2 0.8 1.1 5.1 1.7 - 1.2 1.8 1.7 2.4 1.5 1.2 1.1 0.9 1.0 0.9 1.1 3.3 4.1
0
0.9 0.2 0.7 0.8 1.1 1.1 0.6 2.1 0.6 0.2 0.2 0.5 0.4 0
[1] 4mjq.a 1.3 0.9 1.1 - 1.1 1.2 1.1 1.7 0.1 - 1.3 2.3 1.6 0 0 0.6 0.6 0.9 1.2 1.2 1.5 0.6 0.9 0.8
0
0.2 0 0 0 0 0.1 0 0 0.2 0.5 0.3 0.7 0.3
[1] 4mjr.a 0.3 0.2 0.1 - 1.0 0.3 0.1 0.7 0.3 - 0 0.8 0.2 0.2 0.2 0.2 0.1 0 0 0.3 0.1 0 0.3 0.8 0
0
0 0 0.1 0.1 0 0.4 0 0 0 0.1 0.1 0.3
[1] 4n94.a 1.5 1.1 1.6 - 1.3 1.3 1.1 1.6 0.5 - 1.2 1.6 1.5 0 0 0.5 0.5 1.1 1.2 1.5 1.4 0.8 0.9 1.7 0.1 0.5
0
0 0 0 0.1 0 0 0.3 0.3 0.4 1.0 1.1
[1] 4n95.a 0.9 0.7 1.1 - 1.4 1.1 1.0 1.7 0.3 - 0.9 1.2 1.1 0 0.1 0.3 0.3 0.9 0.9 1.2 1.0 0.7 1.1 1.3 0.1 0.2 0
0
0.1 0.1 0.1 0.1 0 0.1 0.1 0.2 0.9 0.4
[1] 4n96.a 1.5 1.1 1.2 - 1.1 1.2 1.4 1.7 0.5 - 1.2 1.5 1.5 0 0 0.4 0.5 1.1 1.2 1.3 1.3 0.8 0.9 1.7 0.1 0.4 0 0
0
0 0.1 0 0 0.2 0.3 0.4 0.9 0.7
[1] 4n97.a 1.7 1.1 1.5 - 1.1 1.2 1.1 1.6 0.9 - 1.1 1.4 1.4 0.1 0.1 0.5 0.6 1.1 1.0 1.2 1.2 0.8 0.9 2.4 0.4 1.1 0 0 0
0
0.5 0 0.1 0.7 1.0 1.2 1.5 1.4
[1] 4n98.a 1.4 1.0 0.9 - 0.9 1.6 0.8 1.6 0.4 - 0.7 1.3 0.4 0.4 0.4 0.2 0.3 0.4 0.4 0.3 0.3 0.3 0.7 1.0 0 0.3 0.1 0 0.4 0.3
0
0.6 0 0.2 0.2 0.4 0.4 0.2
[1] 4n99.a 1.7 1.0 1.4 - 1.5 1.2 1.5 1.9 1.1 - 1.4 1.9 1.6 0.1 0 0.7 0.6 1.2 1.4 1.3 1.5 0.8 0.9 1.5 0.3 0.6 0 0 0 0 0.4
0
0.1 0.6 0.6 0.5 1.2 1.1
[1] 4n9a.a 1.1 0.8 0.9 - 0.8 1.3 0.4 1.4 0.4 - 0.2 0.8 0.4 0.4 0.4 0.2 0.2 0.3 0.2 0.1 0.4 0.1 0.2 1.1 0 0.3 0.1 0 0.4 0.3 0 0.6
0
0.1 0.3 0.4 0.3 0.2
[1] 4ovf.a 0.9 0.6 0.6 - 1.0 0.8 0.6 1.4 0.4 - 0.3 1.2 0.8 0.2 0.2 0.3 0.3 0.3 0.4 0.3 0.6 0 0.1 0.7 0.1 0.1 0.1 0 0.4 0.1 0 0.4 0
0
0.1 0.3 0.5 0.2
[1] 4ovg.a 0.9 0.7 1.8 - 2.8 3.0 0.3 2.0 0.2 - 0.1 0.8 0.4 0.1 0.2 0.1 0.1 0.1 0.1 0.1 0.2 0 0.1 0.6 0.1 0.1 0 0 0.1 0.1 0 0.3 0 0.1
0
0.1 0.1 0.3
[1] 4ovh.a 1.1 0.9 1.7 - 2.4 2.8 0.1 1.9 0.2 - 0 0.8 0.4 0.1 0.2 0.2 0.1 0 0.1 0 0 0 0.1 0.9 0 0 0 0 0.3 0.1 0 0.4 0 0.1 0
0.1
0.1 0.2
[1] 4pnu.a 1.0 0.6 1.1 - 0.8 0.9 0.2 1.3 0.1 - 0.1 0.6 0.5 0.1 0.1 0.1 0.1 0 0 0.1 0 0 0 0.7 0 0.1 0 0 0.3 0.1 0 0.3 0 0.1 0.1 0
0
0.3
[1] 4pnw.a 0.6 0.1 0.1 - 0.4 0.4 0.3 0.6 0.4 - 0.1 0.6 0.3 0.2 0.5 0.2 0.2 0.1 0.1 0.1 0.2 0 0.2 0.4 0.1 0 0.1 0 0.4 0.4 0 0.4 0 0 0 0 0
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1jqj.a
1jqj.b
1jql.a
1mmi.b
1ok7.b
1unn.a
3d1e.a
3d1f.a
3d1g.b
3f1v.b
3q4j.c
3q4k.b
3q4l.a
3qsb.a
4k3k.a
4k3l.a
4k3m.a
4k3o.a
4k3p.a
4k3q.a
4k3r.a
4k74.a
4k74.b
4mjp.b
4mjq.a
4mjr.a
4n94.a
4n95.a
4n96.a
4n97.a
4n98.a
4n99.a
4n9a.a
4ovf.a
4ovg.a
4ovh.a
4pnu.a
4pnw.a
[1] 1jqj.a
0
.03 .09 .11 .14 .13 .09 .13 .10 .12 .15 .17 .15 .14 .21 .14 .15 .15 .14 .16 .15 .14 .14 .28 .14 .11 .19 .15 .18 .20 .14 .16 .14 .13 .17 .18 .14 .13
[1] 1jqj.b .03
0
.08 .12 .13 .13 .09 .14 .10 .12 .16 .17 .15 .15 .21 .14 .13 .14 .14 .16 .14 .13 .13 .30 .15 .11 .19 .15 .19 .21 .15 .17 .14 .14 .16 .18 .14 .13
[1] 1jql.a .09 .08
0
.10 .13 .11 .07 .15 .10 .12 .13 .14 .13 .14 .18 .11 .13 .11 .12 .13 .13 .12 .12 .31 .12 .10 .16 .14 .16 .17 .13 .16 .12 .12 .17 .18 .13 .13
[1] 1mmi.b .11 .12 .10
0
.15 .15 .10 .16 .06 .14 .14 .13 .14 .11 .15 .12 .15 .13 .11 .11 .13 .14 .14 .31 .09 .12 .12 .11 .13 .14 .12 .13 .10 .12 .18 .19 .12 .15
[1] 1ok7.b .14 .13 .13 .15
0
.09 .06 .15 .10 .05 .08 .05 .10 .06 .11 .05 .08 .05 .06 .09 .03 .03 .04 .21 .07 .05 .08 .08 .09 .09 .08 .09 .07 .06 .12 .12 .07 .04
[1] 1unn.a .13 .13 .11 .15 .09
0
.06 .15 .12 .10 .08 .11 .07 .12 .16 .11 .12 .09 .11 .12 .10 .11 .11 .25 .10 .08 .12 .10 .12 .13 .13 .11 .13 .12 .16 .17 .13 .11
[1] 3d1e.a .09 .09 .07 .10 .06 .06
0
.09 .07 .07 .09 .09 .08 .09 .14 .07 .10 .07 .08 .11 .08 .08 .08 .26 .07 .05 .11 .10 .11 .12 .10 .10 .09 .09 .14 .15 .10 .08
[1] 3d1f.a .13 .14 .15 .16 .15 .15 .09
0
.13 .14 .17 .17 .16 .15 .21 .14 .18 .15 .16 .19 .16 .16 .16 .33 .15 .11 .18 .16 .18 .19 .17 .16 .17 .16 .21 .21 .18 .15
[1] 3d1g.b .10 .10 .10 .06 .10 .12 .07 .13
0
.09 .14 .12 .13 .08 .13 .09 .13 .11 .10 .12 .09 .10 .11 .26 .06 .09 .10 .09 .11 .12 .12 .11 .11 .11 .17 .18 .12 .10
[1] 3f1v.b .12 .12 .12 .14 .05 .10 .07 .14 .09
0
.10 .09 .11 .08 .14 .07 .10 .07 .07 .11 .06 .05 .06 .23 .07 .04 .11 .09 .11 .12 .10 .11 .09 .08 .12 .14 .08 .06
[1] 3q4j.c .15 .16 .13 .14 .08 .08 .09 .17 .14 .10
0
.05 .05 .09 .14 .08 .09 .07 .08 .09 .07 .08 .07 .24 .09 .08 .09 .10 .09 .11 .09 .11 .08 .10 .15 .15 .08 .09
[1] 3q4k.b .17 .17 .14 .13 .05 .11 .09 .17 .12 .09 .05
0
.06 .08 .11 .05 .07 .05 .04 .07 .04 .06 .05 .24 .09 .07 .08 .09 .07 .09 .08 .10 .06 .07 .14 .13 .06 .07
[1] 3q4l.a .15 .15 .13 .14 .10 .07 .08 .16 .13 .11 .05 .06
0
.13 .14 .10 .11 .09 .09 .10 .09 .10 .09 .26 .10 .09 .11 .12 .11 .12 .13 .13 .11 .13 .18 .18 .12 .12
[1] 3qsb.a .14 .15 .14 .11 .06 .12 .09 .15 .08 .08 .09 .08 .13
0
.08 .06 .10 .07 .06 .08 .07 .07 .07 .21 .04 .05 .06 .05 .05 .07 .08 .03 .08 .05 .14 .13 .08 .05
[1] 4k3k.a .21 .21 .18 .15 .11 .16 .14 .21 .13 .14 .14 .11 .14 .08
0
.09 .11 .09 .10 .11 .12 .11 .12 .28 .07 .12 .06 .09 .06 .08 .14 .08 .11 .12 .20 .19 .14 .12
[1] 4k3l.a .14 .14 .11 .12 .05 .11 .07 .14 .09 .07 .08 .05 .10 .06 .09
0
.04 .01 .04 .05 .05 .03 .04 .21 .07 .05 .06 .06 .06 .08 .05 .08 .03 .04 .12 .10 .06 .04
[1] 4k3m.a .15 .13 .13 .15 .08 .12 .10 .18 .13 .10 .09 .07 .11 .10 .11 .04
0
.03 .07 .05 .08 .06 .05 .25 .10 .08 .07 .08 .07 .09 .07 .10 .04 .07 .11 .10 .05 .08
[1] 4k3o.a .15 .14 .11 .13 .05 .09 .07 .15 .11 .07 .07 .05 .09 .07 .09 .01 .03
0
.05 .05 .05 .03 .03 .22 .08 .06 .06 .06 .06 .08 .06 .07 .04 .05 .12 .11 .05 .05
[1] 4k3p.a .14 .14 .12 .11 .06 .11 .08 .16 .10 .07 .08 .04 .09 .06 .10 .04 .07 .05
0
.06 .04 .06 .06 .23 .07 .06 .09 .06 .08 .10 .06 .08 .04 .05 .12 .11 .05 .06
[1] 4k3q.a .16 .16 .13 .11 .09 .12 .11 .19 .12 .11 .09 .07 .10 .08 .11 .05 .05 .05 .06
0
.08 .08 .07 .24 .09 .09 .06 .05 .06 .07 .05 .06 .04 .05 .14 .12 .07 .08
[1] 4k3r.a .15 .14 .13 .13 .03 .10 .08 .16 .09 .06 .07 .04 .09 .07 .12 .05 .08 .05 .04 .08
0
.04 .05 .22 .08 .06 .10 .07 .10 .11 .07 .09 .06 .07 .13 .12 .06 .05
[1] 4k74.a .14 .13 .12 .14 .03 .11 .08 .16 .10 .05 .08 .06 .10 .07 .11 .03 .06 .03 .06 .08 .04
0
.02 .21 .08 .06 .08 .07 .08 .09 .07 .09 .05 .06 .13 .12 .06 .04
[1] 4k74.b .14 .13 .12 .14 .04 .11 .08 .16 .11 .06 .07 .05 .09 .07 .12 .04 .05 .03 .06 .07 .05 .02
0
.22 .09 .06 .08 .07 .08 .09 .08 .09 .06 .07 .13 .12 .06 .04
[1] 4mjp.b .28 .30 .31 .31 .21 .25 .26 .33 .26 .23 .24 .24 .26 .21 .28 .21 .25 .22 .23 .24 .22 .21 .22
0
.24 .23 .25 .24 .25 .26 .22 .24 .23 .19 .28 .27 .23 .19
[1] 4mjq.a .14 .15 .12 .09 .07 .10 .07 .15 .06 .07 .09 .09 .10 .04 .07 .07 .10 .08 .07 .09 .08 .08 .09 .24
0
.05 .05 .05 .05 .06 .10 .05 .08 .08 .14 .15 .10 .08
[1] 4mjr.a .11 .11 .10 .12 .05 .08 .05 .11 .09 .04 .08 .07 .09 .05 .12 .05 .08 .06 .06 .09 .06 .06 .06 .23 .05
0
.09 .06 .09 .10 .08 .07 .08 .06 .10 .12 .07 .05
[1] 4n94.a .19 .19 .16 .12 .08 .12 .11 .18 .10 .11 .09 .08 .11 .06 .06 .06 .07 .06 .09 .06 .10 .08 .08 .25 .05 .09
0
.04 .01 .03 .11 .04 .08 .09 .17 .16 .11 .10
[1] 4n95.a .15 .15 .14 .11 .08 .10 .10 .16 .09 .09 .10 .09 .12 .05 .09 .06 .08 .06 .06 .05 .07 .07 .07 .24 .05 .06 .04
0
.05 .05 .08 .03 .07 .06 .14 .14 .09 .08
[1] 4n96.a .18 .19 .16 .13 .09 .12 .11 .18 .11 .11 .09 .07 .11 .05 .06 .06 .07 .06 .08 .06 .10 .08 .08 .25 .05 .09 .01 .05
0
.03 .11 .04 .08 .09 .17 .16 .11 .10
[1] 4n97.a .20 .21 .17 .14 .09 .13 .12 .19 .12 .12 .11 .09 .12 .07 .08 .08 .09 .08 .10 .07 .11 .09 .09 .26 .06 .10 .03 .05 .03
0
.12 .05 .09 .11 .18 .17 .12 .11
[1] 4n98.a .14 .15 .13 .12 .08 .13 .10 .17 .12 .10 .09 .08 .13 .08 .14 .05 .07 .06 .06 .05 .07 .07 .08 .22 .10 .08 .11 .08 .11 .12
0
.09 .03 .03 .11 .09 .04 .06
[1] 4n99.a .16 .17 .16 .13 .09 .11 .10 .16 .11 .11 .11 .10 .13 .03 .08 .08 .10 .07 .08 .06 .09 .09 .09 .24 .05 .07 .04 .03 .04 .05 .09
0
.09 .08 .16 .15 .11 .08
[1] 4n9a.a .14 .14 .12 .10 .07 .13 .09 .17 .11 .09 .08 .06 .11 .08 .11 .03 .04 .04 .04 .04 .06 .05 .06 .23 .08 .08 .08 .07 .08 .09 .03 .09
0
.04 .12 .10 .04 .06
[1] 4ovf.a .13 .14 .12 .12 .06 .12 .09 .16 .11 .08 .10 .07 .13 .05 .12 .04 .07 .05 .05 .05 .07 .06 .07 .19 .08 .06 .09 .06 .09 .11 .03 .08 .04
0
.10 .08 .05 .04
[1] 4ovg.a .17 .16 .17 .18 .12 .16 .14 .21 .17 .12 .15 .14 .18 .14 .20 .12 .11 .12 .12 .14 .13 .13 .13 .28 .14 .10 .17 .14 .17 .18 .11 .16 .12 .10
0
.03 .09 .12
[1] 4ovh.a .18 .18 .18 .19 .12 .17 .15 .21 .18 .14 .15 .13 .18 .13 .19 .10 .10 .11 .11 .12 .12 .12 .12 .27 .15 .12 .16 .14 .16 .17 .09 .15 .10 .08 .03
0
.08 .10
[1] 4pnu.a .14 .14 .13 .12 .07 .13 .10 .18 .12 .08 .08 .06 .12 .08 .14 .06 .05 .05 .05 .07 .06 .06 .06 .23 .10 .07 .11 .09 .11 .12 .04 .11 .04 .05 .09 .08
0
.06
[1] 4pnw.a .13 .13 .13 .15 .04 .11 .08 .15 .10 .06 .09 .07 .12 .05 .12 .04 .08 .05 .06 .08 .05 .04 .04 .19 .08 .05 .10 .08 .10 .11 .06 .08 .06 .04 .12 .10 .06
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1jqj.a
1jqj.b
1jql.a
1mmi.b
1ok7.b
1unn.a
3d1e.a
3d1f.a
3d1g.b
3f1v.b
3q4j.c
3q4k.b
3q4l.a
3qsb.a
4k3k.a
4k3l.a
4k3m.a
4k3o.a
4k3p.a
4k3q.a
4k3r.a
4k74.a
4k74.b
4mjp.b
4mjq.a
4mjr.a
4n94.a
4n95.a
4n96.a
4n97.a
4n98.a
4n99.a
4n9a.a
4ovf.a
4ovg.a
4ovh.a
4pnu.a
4pnw.a
[1] 1jqj.a
0
0.2 0.7 2.3 2.2 2.2 2.2 2.2 2.2 2.1 2.4 2.3 2.4 2.3 2.2 2.2 2.2 2.2 2.2 2.2 2.3 2.2 2.2 2.6 2.1 2.1 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.0 2.0 2.1 2.3
[1] 1jqj.b 0.2
0
0.7 2.2 2.1 2.1 2.1 2.1 2.2 2.0 2.4 2.2 2.3 2.3 2.2 2.2 2.1 2.1 2.2 2.2 2.3 2.2 2.2 2.6 2.1 2.1 2.1 2.1 2.1 2.2 2.2 2.1 2.2 2.1 2.0 2.0 2.1 2.2
[1] 1jql.a 0.7 0.7
0
2.1 2.1 2.0 2.0 2.0 2.1 1.9 2.2 2.1 2.1 2.2 2.2 2.1 2.0 2.0 2.0 2.0 2.1 2.1 2.1 2.4 2.1 2.0 2.1 2.0 2.1 2.1 2.0 2.1 2.0 2.0 1.9 1.8 1.9 2.1
[1] 1mmi.b 2.3 2.2 2.1
0
1.0 1.2 0.8 1.0 0.6 1.0 0.7 0.7 0.8 0.9 1.1 0.6 0.6 0.6 0.4 0.4 0.5 0.6 0.7 1.5 1.2 1.1 1.0 1.0 1.1 1.1 0.3 1.2 0.4 0.5 1.0 0.7 0.5 0.6
[1] 1ok7.b 2.2 2.1 2.1 1.0
0
0.8 0.6 0.7 0.7 0.8 0.9 0.8 1.1 0.7 0.6 0.6 0.7 0.5 0.9 0.9 0.9 0.5 0.5 1.7 0.6 0.8 0.6 0.8 0.7 0.7 0.9 0.7 0.8 0.8 1.1 0.9 0.8 0.7
[1] 1unn.a 2.2 2.1 2.0 1.2 0.8
0
0.7 0.7 0.9 0.8 0.8 0.9 0.9 0.8 1.0 0.8 0.8 0.7 1.0 0.9 1.0 0.8 0.7 1.5 1.0 1.0 1.0 0.9 1.0 1.0 1.0 1.1 0.9 0.9 1.3 1.0 0.9 0.8
[1] 3d1e.a 2.2 2.1 2.0 0.8 0.6 0.7
0
0.6 0.6 0.7 0.6 0.6 0.8 0.5 0.9 0.4 0.5 0.4 0.7 0.6 0.7 0.4 0.4 1.6 0.9 0.9 0.9 0.8 0.9 0.9 0.7 1.0 0.6 0.6 1.1 0.7 0.6 0.5
[1] 3d1f.a 2.2 2.1 2.0 1.0 0.7 0.7 0.6
0
0.8 0.9 0.7 0.8 0.9 0.6 0.9 0.7 0.7 0.6 0.7 0.8 0.7 0.6 0.6 1.5 0.9 0.9 0.9 0.7 0.9 0.9 0.8 1.0 0.8 0.7 1.2 0.8 0.8 0.7
[1] 3d1g.b 2.2 2.2 2.1 0.6 0.7 0.9 0.6 0.8
0
0.8 0.7 0.6 0.8 0.5 0.9 0.3 0.3 0.3 0.5 0.4 0.6 0.4 0.5 1.3 0.9 1.0 0.9 0.9 0.9 0.9 0.5 0.9 0.4 0.4 0.9 0.6 0.5 0.4
[1] 3f1v.b 2.1 2.0 1.9 1.0 0.8 0.8 0.7 0.9 0.8
0
0.8 0.7 0.8 0.7 0.9 0.8 0.8 0.7 0.9 0.9 1.0 0.6 0.7 1.4 0.9 0.9 0.9 1.0 0.9 0.9 0.8 0.9 0.7 0.7 1.1 0.8 0.8 0.7
[1] 3q4j.c 2.4 2.4 2.2 0.7 0.9 0.8 0.6 0.7 0.7 0.8
0
0.5 0.5 0.6 1.0 0.7 0.7 0.6 0.7 0.7 0.6 0.6 0.7 1.4 1.1 1.0 0.9 1.0 1.0 1.0 0.7 1.0 0.7 0.7 1.3 1.0 0.8 0.7
[1] 3q4k.b 2.3 2.2 2.1 0.7 0.8 0.9 0.6 0.8 0.6 0.7 0.5
0
0.6 0.6 1.0 0.6 0.6 0.5 0.6 0.6 0.6 0.5 0.5 1.4 1.0 1.0 0.9 0.9 1.0 1.0 0.7 1.0 0.6 0.6 1.1 0.8 0.7 0.5
[1] 3q4l.a 2.4 2.3 2.1 0.8 1.1 0.9 0.8 0.9 0.8 0.8 0.5 0.6
0
0.8 1.2 0.8 0.8 0.8 0.7 0.8 0.7 0.8 0.8 1.4 1.3 1.1 1.1 1.0 1.2 1.2 0.8 1.3 0.8 0.8 1.3 1.0 0.9 0.8
[1] 3qsb.a 2.3 2.3 2.2 0.9 0.7 0.8 0.5 0.6 0.5 0.7 0.6 0.6 0.8
0
0.9 0.4 0.5 0.4 0.7 0.6 0.7 0.4 0.3 1.4 0.9 1.0 0.9 0.8 0.9 0.9 0.7 0.9 0.6 0.5 1.1 0.8 0.7 0.4
[1] 4k3k.a 2.2 2.2 2.2 1.1 0.6 1.0 0.9 0.9 0.9 0.9 1.0 1.0 1.2 0.9
0
0.8 0.9 0.7 1.1 1.0 1.0 0.7 0.6 1.7 0.3 0.5 0.2 0.6 0.2 0.3 1.0 0.3 0.9 0.9 1.0 1.0 1.0 0.8
[1] 4k3l.a 2.2 2.2 2.1 0.6 0.6 0.8 0.4 0.7 0.3 0.8 0.7 0.6 0.8 0.4 0.8
0
0.2 0.2 0.6 0.4 0.6 0.4 0.4 1.3 0.8 0.9 0.8 0.9 0.8 0.8 0.5 0.8 0.4 0.4 0.9 0.6 0.5 0.4
[1] 4k3m.a 2.2 2.1 2.0 0.6 0.7 0.8 0.5 0.7 0.3 0.8 0.7 0.6 0.8 0.5 0.9 0.2
0
0.3 0.5 0.3 0.5 0.4 0.5 1.3 0.9 1.0 0.8 0.9 0.8 0.8 0.4 0.9 0.3 0.3 0.9 0.5 0.4 0.4
[1] 4k3o.a 2.2 2.1 2.0 0.6 0.5 0.7 0.4 0.6 0.3 0.7 0.6 0.5 0.8 0.4 0.7 0.2 0.3
0
0.5 0.5 0.6 0.3 0.4 1.3 0.7 0.8 0.7 0.8 0.7 0.7 0.5 0.7 0.4 0.4 0.9 0.6 0.5 0.4
[1] 4k3p.a 2.2 2.2 2.0 0.4 0.9 1.0 0.7 0.7 0.5 0.9 0.7 0.6 0.7 0.7 1.1 0.6 0.5 0.5
0
0.3 0.3 0.6 0.6 1.4 1.1 1.0 1.0 1.0 1.0 1.1 0.4 1.1 0.4 0.5 1.0 0.6 0.5 0.6
[1] 4k3q.a 2.2 2.2 2.0 0.4 0.9 0.9 0.6 0.8 0.4 0.9 0.7 0.6 0.8 0.6 1.0 0.4 0.3 0.5 0.3
0
0.5 0.5 0.6 1.3 1.0 1.1 1.0 1.0 1.0 1.0 0.3 1.0 0.2 0.3 0.9 0.5 0.3 0.5
[1] 4k3r.a 2.3 2.3 2.1 0.5 0.9 1.0 0.7 0.7 0.6 1.0 0.6 0.6 0.7 0.7 1.0 0.6 0.5 0.6 0.3 0.5
0
0.6 0.7 1.4 1.1 1.0 1.0 1.0 1.0 1.1 0.6 1.1 0.6 0.6 1.1 0.8 0.6 0.6
[1] 4k74.a 2.2 2.2 2.1 0.6 0.5 0.8 0.4 0.6 0.4 0.6 0.6 0.5 0.8 0.4 0.7 0.4 0.4 0.3 0.6 0.5 0.6
0
0.2 1.3 0.7 0.7 0.6 0.7 0.7 0.7 0.6 0.6 0.5 0.5 0.9 0.7 0.6 0.3
[1] 4k74.b 2.2 2.2 2.1 0.7 0.5 0.7 0.4 0.6 0.5 0.7 0.7 0.5 0.8 0.3 0.6 0.4 0.5 0.4 0.6 0.6 0.7 0.2
0
1.4 0.6 0.7 0.6 0.7 0.6 0.6 0.7 0.6 0.6 0.6 0.9 0.7 0.7 0.4
[1] 4mjp.b 2.6 2.6 2.4 1.5 1.7 1.5 1.6 1.5 1.3 1.4 1.4 1.4 1.4 1.4 1.7 1.3 1.3 1.3 1.4 1.3 1.4 1.3 1.4
0
1.7 1.7 1.7 1.7 1.7 1.6 1.3 1.6 1.3 1.2 1.5 1.3 1.3 1.1
[1] 4mjq.a 2.1 2.1 2.1 1.2 0.6 1.0 0.9 0.9 0.9 0.9 1.1 1.0 1.3 0.9 0.3 0.8 0.9 0.7 1.1 1.0 1.1 0.7 0.6 1.7
0
0.6 0.3 0.7 0.3 0.3 1.0 0.3 0.9 0.9 0.9 0.9 0.9 0.8
[1] 4mjr.a 2.1 2.1 2.0 1.1 0.8 1.0 0.9 0.9 1.0 0.9 1.0 1.0 1.1 1.0 0.5 0.9 1.0 0.8 1.0 1.1 1.0 0.7 0.7 1.7 0.6
0
0.4 0.5 0.4 0.5 1.0 0.5 1.0 0.9 1.0 1.0 1.0 0.9
[1] 4n94.a 2.2 2.1 2.1 1.0 0.6 1.0 0.9 0.9 0.9 0.9 0.9 0.9 1.1 0.9 0.2 0.8 0.8 0.7 1.0 1.0 1.0 0.6 0.6 1.7 0.3 0.4
0
0.5 0.1 0.2 0.9 0.3 0.9 0.8 0.9 0.9 0.9 0.8
[1] 4n95.a 2.2 2.1 2.0 1.0 0.8 0.9 0.8 0.7 0.9 1.0 1.0 0.9 1.0 0.8 0.6 0.9 0.9 0.8 1.0 1.0 1.0 0.7 0.7 1.7 0.7 0.5 0.5
0
0.6 0.6 1.0 0.6 1.0 0.9 1.1 1.0 1.0 0.9
[1] 4n96.a 2.2 2.1 2.1 1.1 0.7 1.0 0.9 0.9 0.9 0.9 1.0 1.0 1.2 0.9 0.2 0.8 0.8 0.7 1.0 1.0 1.0 0.7 0.6 1.7 0.3 0.4 0.1 0.6
0
0.2 0.9 0.3 0.9 0.8 0.9 0.9 0.9 0.8
[1] 4n97.a 2.2 2.2 2.1 1.1 0.7 1.0 0.9 0.9 0.9 0.9 1.0 1.0 1.2 0.9 0.3 0.8 0.8 0.7 1.1 1.0 1.1 0.7 0.6 1.6 0.3 0.5 0.2 0.6 0.2
0
1.0 0.3 0.9 0.8 0.9 0.9 0.9 0.8
[1] 4n98.a 2.2 2.2 2.0 0.3 0.9 1.0 0.7 0.8 0.5 0.8 0.7 0.7 0.8 0.7 1.0 0.5 0.4 0.5 0.4 0.3 0.6 0.6 0.7 1.3 1.0 1.0 0.9 1.0 0.9 1.0
0
1.0 0.2 0.3 0.8 0.5 0.2 0.6
[1] 4n99.a 2.2 2.1 2.1 1.2 0.7 1.1 1.0 1.0 0.9 0.9 1.0 1.0 1.3 0.9 0.3 0.8 0.9 0.7 1.1 1.0 1.1 0.6 0.6 1.6 0.3 0.5 0.3 0.6 0.3 0.3 1.0
0
0.9 0.8 0.9 0.9 0.9 0.8
[1] 4n9a.a 2.2 2.2 2.0 0.4 0.8 0.9 0.6 0.8 0.4 0.7 0.7 0.6 0.8 0.6 0.9 0.4 0.3 0.4 0.4 0.2 0.6 0.5 0.6 1.3 0.9 1.0 0.9 1.0 0.9 0.9 0.2 0.9
0
0.3 0.8 0.4 0.3 0.5
[1] 4ovf.a 2.2 2.1 2.0 0.5 0.8 0.9 0.6 0.7 0.4 0.7 0.7 0.6 0.8 0.5 0.9 0.4 0.3 0.4 0.5 0.3 0.6 0.5 0.6 1.2 0.9 0.9 0.8 0.9 0.8 0.8 0.3 0.8 0.3
0
0.7 0.4 0.2 0.4
[1] 4ovg.a 2.0 2.0 1.9 1.0 1.1 1.3 1.1 1.2 0.9 1.1 1.3 1.1 1.3 1.1 1.0 0.9 0.9 0.9 1.0 0.9 1.1 0.9 0.9 1.5 0.9 1.0 0.9 1.1 0.9 0.9 0.8 0.9 0.8 0.7
0
0.5 0.7 0.8
[1] 4ovh.a 2.0 2.0 1.8 0.7 0.9 1.0 0.7 0.8 0.6 0.8 1.0 0.8 1.0 0.8 1.0 0.6 0.5 0.6 0.6 0.5 0.8 0.7 0.7 1.3 0.9 1.0 0.9 1.0 0.9 0.9 0.5 0.9 0.4 0.4 0.5
0
0.3 0.6
[1] 4pnu.a 2.1 2.1 1.9 0.5 0.8 0.9 0.6 0.8 0.5 0.8 0.8 0.7 0.9 0.7 1.0 0.5 0.4 0.5 0.5 0.3 0.6 0.6 0.7 1.3 0.9 1.0 0.9 1.0 0.9 0.9 0.2 0.9 0.3 0.2 0.7 0.3
0
0.5
[1] 4pnw.a 2.3 2.2 2.1 0.6 0.7 0.8 0.5 0.7 0.4 0.7 0.7 0.5 0.8 0.4 0.8 0.4 0.4 0.4 0.6 0.5 0.6 0.3 0.4 1.1 0.8 0.9 0.8 0.9 0.8 0.8 0.6 0.8 0.5 0.4 0.8 0.6 0.5
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.8 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1jqj.a
1jqj.b
1jql.a
1mmi.b
1ok7.b
1unn.a
3d1e.a
3d1f.a
3d1g.b
3f1v.b
3q4j.c
3q4k.b
3q4l.a
3qsb.a
4k3k.a
4k3l.a
4k3m.a
4k3o.a
4k3p.a
4k3q.a
4k3r.a
4k74.a
4k74.b
4mjp.b
4mjq.a
4mjr.a
4n94.a
4n95.a
4n96.a
4n97.a
4n98.a
4n99.a
4n9a.a
4ovf.a
4ovg.a
4ovh.a
4pnu.a
4pnw.a
[1] 1jqj.a
0
0.3 1.1 3.3 3.4 3.2 3.4 3.4 3.4 3.4 3.5 3.4 3.4 3.5 3.3 3.4 3.4 3.4 3.5 3.5 3.5 3.3 3.3 3.8 3.1 3.1 3.2 3.3 3.3 3.3 3.4 3.2 3.4 3.3 3.1 3.1 3.2 3.2
[1] 1jqj.b 0.3
0
1.0 3.3 3.4 3.2 3.3 3.4 3.4 3.4 3.4 3.3 3.4 3.4 3.2 3.4 3.4 3.4 3.4 3.4 3.5 3.2 3.3 3.7 3.1 3.1 3.2 3.3 3.2 3.2 3.3 3.2 3.4 3.3 3.1 3.0 3.1 3.1
[1] 1jql.a 1.1 1.0
0
3.2 3.4 3.1 3.2 3.3 3.3 3.3 3.4 3.3 3.3 3.4 3.3 3.4 3.4 3.3 3.4 3.3 3.4 3.2 3.3 3.6 3.1 3.1 3.2 3.4 3.3 3.3 3.2 3.2 3.3 3.2 3.0 2.9 3.0 3.1
[1] 1mmi.b 3.3 3.3 3.2
0
1.7 1.8 1.6 1.7 1.4 1.8 1.2 1.0 1.5 1.6 1.6 1.1 1.1 1.1 1.1 1.0 1.1 1.2 1.5 2.4 1.7 1.6 1.6 2.2 1.6 1.7 0.6 1.7 1.0 0.7 1.4 1.3 1.2 1.1
[1] 1ok7.b 3.4 3.4 3.4 1.7
0
1.6 1.8 1.7 1.5 1.6 1.1 1.0 1.7 1.2 1.3 1.1 1.3 1.1 1.5 1.4 1.5 1.0 1.3 2.1 1.4 1.4 1.3 1.9 1.2 1.3 1.1 1.1 1.3 1.1 1.5 1.5 1.4 1.0
[1] 1unn.a 3.2 3.2 3.1 1.8 1.6
0
1.6 1.8 1.6 1.8 1.2 1.3 1.3 1.6 1.6 1.6 1.6 1.6 1.8 1.7 1.8 1.1 1.4 2.2 1.6 1.7 1.6 2.1 1.6 1.7 1.5 1.7 1.7 1.4 1.9 1.8 1.7 1.2
[1] 3d1e.a 3.4 3.3 3.2 1.6 1.8 1.6
0
1.6 1.7 1.7 1.5 1.2 1.7 1.7 1.6 1.5 1.4 1.4 1.5 1.4 1.5 1.2 1.4 2.6 1.6 1.6 1.8 2.3 1.8 1.8 1.4 1.8 1.5 1.2 1.7 1.5 1.4 1.2
[1] 3d1f.a 3.4 3.4 3.3 1.7 1.7 1.8 1.6
0
1.7 2.1 1.5 1.4 1.6 1.7 1.5 1.2 1.2 1.2 1.3 1.3 1.2 1.6 1.4 2.3 1.6 1.6 1.6 2.3 1.6 1.8 1.6 1.6 1.4 1.5 1.4 1.3 1.1 1.3
[1] 3d1g.b 3.4 3.4 3.3 1.4 1.5 1.6 1.7 1.7
0
1.9 1.1 1.1 1.4 1.5 1.6 1.0 1.2 1.1 1.3 1.3 1.3 1.1 1.4 2.1 1.6 1.8 1.5 2.2 1.6 1.6 0.9 1.6 1.1 0.9 1.6 1.4 1.2 0.9
[1] 3f1v.b 3.4 3.4 3.3 1.8 1.6 1.8 1.7 2.1 1.9
0
1.4 1.2 1.6 1.7 1.7 1.5 1.6 1.5 1.7 1.6 1.7 1.3 1.4 2.2 1.8 1.8 1.8 2.1 1.8 1.8 1.5 1.7 1.5 1.5 1.7 1.6 1.6 1.3
[1] 3q4j.c 3.5 3.4 3.4 1.2 1.1 1.2 1.5 1.5 1.1 1.4
0
0.8 0.9 1.0 1.4 1.2 1.4 1.2 1.4 1.4 1.3 1.1 1.4 1.7 1.6 1.7 1.4 1.8 1.4 1.4 1.1 1.3 1.4 1.2 1.8 1.6 1.5 1.1
[1] 3q4k.b 3.4 3.3 3.3 1.0 1.0 1.3 1.2 1.4 1.1 1.2 0.8
0
1.0 1.0 1.4 1.1 1.1 1.0 1.2 1.2 1.1 0.8 1.2 1.7 1.4 1.6 1.3 1.6 1.3 1.3 0.8 1.2 1.1 0.9 1.5 1.4 1.2 0.9
[1] 3q4l.a 3.4 3.4 3.3 1.5 1.7 1.3 1.7 1.6 1.4 1.6 0.9 1.0
0
1.4 1.7 1.5 1.6 1.5 1.6 1.6 1.5 1.3 1.6 1.9 1.8 1.8 1.7 2.4 1.8 1.8 1.3 1.8 1.5 1.4 1.9 1.8 1.6 1.3
[1] 3qsb.a 3.5 3.4 3.4 1.6 1.2 1.6 1.7 1.7 1.5 1.7 1.0 1.0 1.4
0
1.4 1.3 1.4 1.3 1.6 1.5 1.5 1.2 1.5 1.8 1.5 1.6 1.3 2.0 1.3 1.4 1.2 1.2 1.4 1.2 1.7 1.6 1.6 1.0
[1] 4k3k.a 3.3 3.2 3.3 1.6 1.3 1.6 1.6 1.5 1.6 1.7 1.4 1.4 1.7 1.4
0
1.5 1.5 1.5 1.6 1.6 1.6 1.3 1.5 2.2 0.9 1.2 0.8 1.7 0.8 0.9 1.5 0.9 1.6 1.3 1.6 1.6 1.6 1.3
[1] 4k3l.a 3.4 3.4 3.4 1.1 1.1 1.6 1.5 1.2 1.0 1.5 1.2 1.1 1.5 1.3 1.5
0
0.7 0.5 0.9 0.8 0.9 1.4 1.2 1.9 1.5 1.7 1.5 1.9 1.4 1.5 1.1 1.3 0.6 1.1 1.1 1.0 0.8 1.2
[1] 4k3m.a 3.4 3.4 3.4 1.1 1.3 1.6 1.4 1.2 1.2 1.6 1.4 1.1 1.6 1.4 1.5 0.7
0
0.6 0.7 0.4 0.7 1.4 1.2 2.0 1.6 1.8 1.6 1.9 1.6 1.6 1.1 1.5 0.6 0.9 0.9 0.8 0.7 1.3
[1] 4k3o.a 3.4 3.4 3.3 1.1 1.1 1.6 1.4 1.2 1.1 1.5 1.2 1.0 1.5 1.3 1.5 0.5 0.6
0
0.8 0.7 0.8 1.3 1.1 2.0 1.5 1.7 1.4 1.8 1.4 1.5 1.0 1.3 0.6 1.1 1.0 0.9 0.8 1.1
[1] 4k3p.a 3.5 3.4 3.4 1.1 1.5 1.8 1.5 1.3 1.3 1.7 1.4 1.2 1.6 1.6 1.6 0.9 0.7 0.8
0
0.5 0.6 1.4 1.2 2.0 1.8 1.9 1.7 2.0 1.7 1.8 1.1 1.6 0.8 1.1 1.0 0.8 0.7 1.3
[1] 4k3q.a 3.5 3.4 3.3 1.0 1.4 1.7 1.4 1.3 1.3 1.6 1.4 1.2 1.6 1.5 1.6 0.8 0.4 0.7 0.5
0
0.6 1.4 1.2 2.0 1.7 1.9 1.7 2.0 1.6 1.7 1.0 1.6 0.6 0.9 0.9 0.7 0.6 1.3
[1] 4k3r.a 3.5 3.5 3.4 1.1 1.5 1.8 1.5 1.2 1.3 1.7 1.3 1.1 1.5 1.5 1.6 0.9 0.7 0.8 0.6 0.6
0
1.4 1.3 2.0 1.8 1.9 1.7 2.0 1.7 1.8 1.1 1.6 0.8 1.1 1.1 1.0 0.8 1.3
[1] 4k74.a 3.3 3.2 3.2 1.2 1.0 1.1 1.2 1.6 1.1 1.3 1.1 0.8 1.3 1.2 1.3 1.4 1.4 1.3 1.4 1.4 1.4
0
0.8 1.8 1.2 1.4 1.2 1.4 1.1 1.2 1.1 1.0 1.3 1.1 1.5 1.4 1.4 0.8
[1] 4k74.b 3.3 3.3 3.3 1.5 1.3 1.4 1.4 1.4 1.4 1.4 1.4 1.2 1.6 1.5 1.5 1.2 1.2 1.1 1.2 1.2 1.3 0.8
0
2.1 1.5 1.6 1.5 1.6 1.4 1.5 1.4 1.3 1.1 1.4 1.4 1.3 1.2 1.2
[1] 4mjp.b 3.8 3.7 3.6 2.4 2.1 2.2 2.6 2.3 2.1 2.2 1.7 1.7 1.9 1.8 2.2 1.9 2.0 2.0 2.0 2.0 2.0 1.8 2.1
0
2.2 2.1 2.2 2.5 2.2 2.2 1.8 2.1 1.9 1.8 2.2 2.1 2.0 1.4
[1] 4mjq.a 3.1 3.1 3.1 1.7 1.4 1.6 1.6 1.6 1.6 1.8 1.6 1.4 1.8 1.5 0.9 1.5 1.6 1.5 1.8 1.7 1.8 1.2 1.5 2.2
0
0.9 0.8 1.6 0.8 0.8 1.5 0.7 1.6 1.4 1.6 1.6 1.6 1.2
[1] 4mjr.a 3.1 3.1 3.1 1.6 1.4 1.7 1.6 1.6 1.8 1.8 1.7 1.6 1.8 1.6 1.2 1.7 1.8 1.7 1.9 1.9 1.9 1.4 1.6 2.1 0.9
0
1.0 0.7 1.1 1.1 1.6 0.9 1.8 1.6 1.7 1.7 1.6 1.3
[1] 4n94.a 3.2 3.2 3.2 1.6 1.3 1.6 1.8 1.6 1.5 1.8 1.4 1.3 1.7 1.3 0.8 1.5 1.6 1.4 1.7 1.7 1.7 1.2 1.5 2.2 0.8 1.0
0
1.6 0.4 0.6 1.4 0.5 1.6 1.3 1.6 1.7 1.6 1.2
[1] 4n95.a 3.3 3.3 3.4 2.2 1.9 2.1 2.3 2.3 2.2 2.1 1.8 1.6 2.4 2.0 1.7 1.9 1.9 1.8 2.0 2.0 2.0 1.4 1.6 2.5 1.6 0.7 1.6
0
1.6 1.6 1.7 1.4 1.9 1.7 1.9 1.8 1.8 1.4
[1] 4n96.a 3.3 3.2 3.3 1.6 1.2 1.6 1.8 1.6 1.6 1.8 1.4 1.3 1.8 1.3 0.8 1.4 1.6 1.4 1.7 1.6 1.7 1.1 1.4 2.2 0.8 1.1 0.4 1.6
0
0.6 1.3 0.6 1.5 1.3 1.6 1.7 1.6 1.2
[1] 4n97.a 3.3 3.2 3.3 1.7 1.3 1.7 1.8 1.8 1.6 1.8 1.4 1.3 1.8 1.4 0.9 1.5 1.6 1.5 1.8 1.7 1.8 1.2 1.5 2.2 0.8 1.1 0.6 1.6 0.6
0
1.4 0.5 1.6 1.3 1.7 1.7 1.7 1.2
[1] 4n98.a 3.4 3.3 3.2 0.6 1.1 1.5 1.4 1.6 0.9 1.5 1.1 0.8 1.3 1.2 1.5 1.1 1.1 1.0 1.1 1.0 1.1 1.1 1.4 1.8 1.5 1.6 1.4 1.7 1.3 1.4
0
1.2 0.9 0.6 1.3 1.2 1.1 1.0
[1] 4n99.a 3.2 3.2 3.2 1.7 1.1 1.7 1.8 1.6 1.6 1.7 1.3 1.2 1.8 1.2 0.9 1.3 1.5 1.3 1.6 1.6 1.6 1.0 1.3 2.1 0.7 0.9 0.5 1.4 0.6 0.5 1.2
0
1.4 1.2 1.6 1.6 1.6 1.1
[1] 4n9a.a 3.4 3.4 3.3 1.0 1.3 1.7 1.5 1.4 1.1 1.5 1.4 1.1 1.5 1.4 1.6 0.6 0.6 0.6 0.8 0.6 0.8 1.3 1.1 1.9 1.6 1.8 1.6 1.9 1.5 1.6 0.9 1.4
0
1.0 1.0 0.8 0.7 1.2
[1] 4ovf.a 3.3 3.3 3.2 0.7 1.1 1.4 1.2 1.5 0.9 1.5 1.2 0.9 1.4 1.2 1.3 1.1 0.9 1.1 1.1 0.9 1.1 1.1 1.4 1.8 1.4 1.6 1.3 1.7 1.3 1.3 0.6 1.2 1.0
0
1.2 1.1 1.0 1.0
[1] 4ovg.a 3.1 3.1 3.0 1.4 1.5 1.9 1.7 1.4 1.6 1.7 1.8 1.5 1.9 1.7 1.6 1.1 0.9 1.0 1.0 0.9 1.1 1.5 1.4 2.2 1.6 1.7 1.6 1.9 1.6 1.7 1.3 1.6 1.0 1.2
0
0.5 0.7 1.4
[1] 4ovh.a 3.1 3.0 2.9 1.3 1.5 1.8 1.5 1.3 1.4 1.6 1.6 1.4 1.8 1.6 1.6 1.0 0.8 0.9 0.8 0.7 1.0 1.4 1.3 2.1 1.6 1.7 1.7 1.8 1.7 1.7 1.2 1.6 0.8 1.1 0.5
0
0.5 1.3
[1] 4pnu.a 3.2 3.1 3.0 1.2 1.4 1.7 1.4 1.1 1.2 1.6 1.5 1.2 1.6 1.6 1.6 0.8 0.7 0.8 0.7 0.6 0.8 1.4 1.2 2.0 1.6 1.6 1.6 1.8 1.6 1.7 1.1 1.6 0.7 1.0 0.7 0.5
0
1.2
[1] 4pnw.a 3.2 3.1 3.1 1.1 1.0 1.2 1.2 1.3 0.9 1.3 1.1 0.9 1.3 1.0 1.3 1.2 1.3 1.1 1.3 1.3 1.3 0.8 1.2 1.4 1.2 1.3 1.2 1.4 1.2 1.2 1.0 1.1 1.2 1.0 1.4 1.3 1.2
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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