DEF_ECOLI_2_168

Peptide deformylase [Polypeptide deformylase family]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer
 • A1 (DEF_ECOLI):43:46,51,87:92,95,96,98,126,129,130,133,134,13743:46,51,87:92,95,96,98,126,129,130,133,134,137
Metals (Me):Co/Ni/Zn

Full PDB list

1bs4,1bs5,1bs6,1bs7,1bs8,1bsj,1bsk,1bsz,1dff,1g27,1g2a,1icj,1lru,1xem,1xen,1xeo,2ai8,2w3t,2w3u,3k6l,4al2,4al3,4az4 (redundant pocketome entry)

Contact map

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ligand
A1 Me
E
4
3
G
4
4
I
4
5
G
4
6
Q
5
1
I
8
7
E
8
8
E
8
9
G
9
0
C
9
1
L
9
2
P
9
5
E
9
6
R
9
8
L
1
2
6
I
1
2
9
C
1
3
0
H
1
3
3
E
1
3
4
H
1
3
7
[1]1bsj.a mln 29 . . . . . . . . . . . . . . . . . . . . Co
[1]3k6l.b 2bb 24 . . . . . . . . . . . . . . . . . . . . Ni
[1]1g27.a bb1 23 . . . . . . . . . . . . . . . . . . . . Ni
[1]1g2a.a bb2 27 . . . . . . . . . . . . . . . . . . . . Ni
[1]2ai8.a sb7 13 . . . . . . . . . . . . . . . . . . . . Ni
[1]1bs4.c 2pe 28 . . . . . . . . . . . . . . . . . . . . Zn
[1]1bs6.b MAS 20 . . . . . . . . . . . . . . . . . . . . Ni
[1]1xeo.a none . . . . . . . . . . . . . . . . . . . . Co
[1]4al3.a none . . . . . . . . . * . . . . . . . . . . Co
[1]4az4.a none . . . . . . . . . . . . . . . . * . . . Co

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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