DEF1B_ARATH_80_272_actinonin

Peptide deformylase 1B, chloroplastic/mitochondrial [Polypeptide deformylase family]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer
 • A1 (DEF1B_ARATH):120:123,128,167:172,178,206,209,210,213,214,217120:123,128,167:172,178,206,209,210,213,214,217
Metals (Me):Zn

Full PDB list

3cpm,3m6o,3m6p,3m6q,3m6r,3o3j,3pn2,3pn3,3pn4,3pn5,3pn6 (redundant pocketome entry)

Contact map

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ligand
A1 Me
D
1
2
0
G
1
2
1
I
1
2
2
G
1
2
3
Q
1
2
8
F
1
6
7
D
1
6
8
E
1
6
9
G
1
7
0
C
1
7
1
L
1
7
2
Y
1
7
8
L
2
0
6
R
2
0
9
I
2
1
0
H
2
1
3
E
2
1
4
H
2
1
7
[1]3pn4.a bb2 27 . . . . . . . . . . . . . . . . . . Zn
[1]3pn3.a zn 1 . . . . . . . . . . . . . . . . . . Zn
[1]3o3j.a bb4 15 . . . . . . . . . . . . . . . . . . Zn
[1]3cpm.a none . . . . . . . . . . . . . . . . . . Zn
[1]3m6q.a bb2 27 . Q . . . . . . . . . . . . . . . . Zn
[1]3m6r.d bb2 27 . M . . . . . . . . . . . . . . . . Zn
[1]3pn5.a zn 1 . Q . . . . . . . . . . . . . . . . Zn
[1]3pn6.b none . M . . . . . . . . . . . . . . . . Zn

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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