DDLB_ECOLI_1_306

D-alanine--D-alanine ligase B [D-alanine--D-alanine ligase family]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer[show domain annotation]
 • A1 (DDLB_ECOLI):D: ATP-grasp (142,144,148:151,154,180:183,187,209,210,215,216,255,257,259,269,270,272,275,276,281,282)
15,18,63,97
15,18,63,97,142,144,148:151,154,180:183,187,209,210,215,216,255,257,259,269,270,272,275,276,281,282
Metals (Me):Mg

Full PDB list

1iov,1iow,2dln,4c5a,4c5b,4c5c

Contact map

[download in TSV format]
   
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ligand
A1 Me
E
1
5
V
1
8
H
6
3
K
9
7
I
1
4
2
K
1
4
4
E
1
4
8
G
1
4
9
S
1
5
0
S
1
5
1
M
1
5
4
E
1
8
0
K
1
8
1
W
1
8
2
L
1
8
3
E
1
8
7
F
2
0
9
Y
2
1
0
K
2
1
5
Y
2
1
6
R
2
5
5
D
2
5
7
M
2
5
9
L
2
6
9
E
2
7
0
N
2
7
2
P
2
7
5
G
2
7
6
S
2
8
1
L
2
8
2
[1]1iov.a adp,pob 44 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mg
[1]4c5a.a adp,ds0 38 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mg
[1]1iow.a adp,phy 43 . . . . . . . . . . . . . . . . . . . F . . . . . . . . . . Mg
[1]4c5b.a adp,dal.dal 38 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mg
[1]4c5c.a atp.dal.dal 42 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mg
[1]2dln.a adp,phy 43 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mg

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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