DAPAT_ARATH_36_461

LL-diaminopimelate aminotransferase, chloroplastic [Class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains homodimer[show domain annotation]
 • A1 (DAPAT_ARATH):R: Pyridoxal phosphate binding (163,164)
R: Pyridoxal phosphate binding (302,304)
72,74,98,99,162,187,190,240,244,272,274,275,305,313,399,439
72,74,98,99,162:164,187,190,240,244,272,274,275,302,304,305,313,399,439
 • A2 (DAPAT_ARATH):129,344129,344

Full PDB list

2z1z,2z20,3ei5,3ei6,3ei7,3ei8,3ei9,3eia,3eib (redundant pocketome entry)

Contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 A2
Y
7
2
F
7
4
I
9
8
G
9
9
G
1
6
2
A
1
6
3
K
1
6
4
Y
1
8
7
Y
1
9
0
C
2
4
0
N
2
4
4
D
2
7
2
A
2
7
4
Y
2
7
5
S
3
0
2
S
3
0
4
K
3
0
5
R
3
1
3
Y
3
9
9
R
4
3
9
Y
1
2
9
N
3
4
4
[1]3ei6.a pl4 28 . . . . . . . . . . . . . . . . . . . . . .
[1]3ei8.a plp 15 . . . . . . . . . . . . . . . . N . . . . .
[1]3ei8.b pl5 28 . . . . . . . . . . . . . . . . N . . . . .
[1]3ei9.b pl6 25 . . . . . . . . . . . . . . . . N . . . . .
[1]3ei5.a pgu 25 . . . . . . . . . . . . . . . . . . . . . .
[1]2z1z.a mlt,plp 24 . . . . . . . . . . . . . . . . . . . . . .
[1]3eia.b pl6 25 . . . . . . . . . . . . . . . . Q . . . . .
[1]2z20.b plp 15 . . . . . . . . . . . . . . . . . . . . . .
[1]3ei7.a none . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
Similar entries
Feedback