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CTR1_ARATH_537_821

Serine/threonine-protein kinase CTR1 [Protein kinase superfamily. TKL Ser/Thr protein kinase family. RAF subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (CTR1_ARATH):D: Protein kinase (557:560, 562, 565, 576, 578, 625:628, 631, 632, 635, 680, 681, 683, 693, 694)557:560, 562, 565, 576, 578, 625:628, 631, 632, 635, 680, 681, 683, 693, 694

Full PDB list

3p86, 3ppz

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
I
5
5
7
G
5
5
8
F
5
6
2
V
5
6
5
A
5
7
6
K
5
7
8
T
6
2
5
E
6
2
6
Y
6
2
7
L
6
2
8
G
6
3
1
R
6
3
5
P
6
8
0
N
6
8
1
L
6
8
3
C
6
9
3
D
6
9
4
[1]3p86.b none . . . . . . . . . . . . . . . . .
[1]3ppz.a stu35 . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
I
5
5
7
G
5
5
8
A
5
5
9
G
5
6
0
F
5
6
2
V
5
6
5
A
5
7
6
K
5
7
8
T
6
2
5
E
6
2
6
Y
6
2
7
L
6
2
8
G
6
3
1
S
6
3
2
R
6
3
5
P
6
8
0
N
6
8
1
L
6
8
3
C
6
9
3
D
6
9
4
[1]3p86.b . . . . . . . . . . . . . . . . . . . .
[1]3ppz.a . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
3p86.b is apo
3ppz.a:stu
[1] 3p86.b
-
0.7
[1] 3ppz.a -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
3p86.b
3ppz.a
[1] 3p86.b
0
.04
[1] 3ppz.a .04
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.0 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3p86.b
3ppz.a
[1] 3p86.b
0
1.2
[1] 3ppz.a 1.2
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3p86.b
3ppz.a
[1] 3p86.b
0
1.9
[1] 3ppz.a 1.9
0
[Binding site full-atom RMSD matrix]







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[ENTRY 2D visualization]

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