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CSK2A_MAIZE_1_331

Casein kinase II subunit alpha [Protein kinase superfamily. Ser/Thr protein kinase family. CK2 subfamily]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (CSK2A_MAIZE):D: Protein kinase (38, 40:46, 48, 50, 61, 63, 76, 90, 108:116, 153, 155, 156, 158, 169:171)38, 40:46, 48, 50, 61, 63, 76, 90, 108:116, 153, 155, 156, 158, 169:171

Full PDB list

1daw, 1day, 1ds5, 1f0q, 1j91, 1jam, 1lp4, 1lpu, 1lr4, 1m2p, 1m2q, 1m2r, 1om1, 1zoe, 1zog, 1zoh, 2oxd, 2oxx, 2oxy, 2pvh, 2pvj, 2pvk, 2pvl, 2pvm, 2pvn, 2qc6, 3be9, 3fl5, 3kxg, 3kxh, 3kxm, 3kxn, 3pvg, 3pwd, 3pzh, 4anm, 4dgm, 4dgn, 4dgo, 4rlk (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
R
3
8
V
4
0
G
4
1
R
4
2
G
4
3
S
4
6
V
4
8
E
5
0
I
6
1
K
6
3
V
9
0
F
1
0
8
E
1
0
9
Y
1
1
0
V
1
1
1
N
1
1
3
D
1
1
5
F
1
1
6
K
1
5
3
H
1
5
5
N
1
5
6
M
1
5
8
I
1
6
9
D
1
7
0
[1]1daw.a anp,mg,mg33 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1day.a gnp,mg,mg34 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1ds5.a amp23 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1ds5.b amp,mg24 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1jam.a none . . . . . . . . . . . . . . . . . . . . . . . .
[1]1lpu.a ben9 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1m2p.a hna21 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1m2q.a mnx20 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1m2r.a mny20 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1om1.a iqa22 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1zoe.a k2516 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1zog.a k37,k3730 . . . . . . . . . . . . . . . . . . . . . . . .
[1]1zoh.a k44,na18 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2oxd.a k3214 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2oxx.a k2214 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2oxy.a k1713 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2pvh.a p1923 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2pvj.a p4426 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2pvk.a p4527 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2pvl.a p5526 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2pvm.a p2926 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2pvn.a p6329 . . . . . . . . . . . . . . . . . . . . . . . .
[1]2qc6.a g1215 . . . . . . . . . . . . . . . . . . . . . . . .
[1]3be9.a p0427 . . . . . . . . . . . . . . . . . . . . . . . .
[1]3kxg.a k6x14 . . . . . . . . . . . . . . . . . . . . . . . .
[1]3kxh.a k6620 . . . . . . . . . . . . . . . . . . . . . . . .
[1]3kxm.a k7420 . . . . . . . . . . . . . . . . . . . . . . . .
[1]3kxn.a k8x13 . . . . . . . . . . . . . . . . . . . . . . . .
[1]3pvg.a k6817 . . . . . . . . . . . . . . . . . . . . . . . .
[1]3pwd.a cz020 . . . . . . . . . . . . . . . . . . . . . . . .
[1]3pzh.a emo20 . . . . . . . . . . . . . . . . . . . . . . . .
[1]4anm.a wul22 . . . . . . . . . . . . . . . . . . . . . . . .
[1]4dgm.a agi20 . . . . . . . . . . . . . . . . . . . . . . . .
[1]4dgn.a lu221 . . . . . . . . . . . . . . . . . . . . . . . .
[1]4dgo.a 0jw15 . . . . . . . . . . . . . . . . . . . . . . . .
[1]4rlk.a e9125 . . . . . . . . . . . . . . . . . . . . . . . .
[2]1j91.b tbs13 . . . . . . . . . . . . . . . . . . . . . . . .
[3]3fl5.a txq20 . . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
R
3
8
V
4
0
G
4
1
R
4
2
G
4
3
K
4
4
Y
4
5
S
4
6
V
4
8
E
5
0
I
6
1
K
6
3
E
7
6
V
9
0
F
1
0
8
E
1
0
9
Y
1
1
0
V
1
1
1
N
1
1
2
N
1
1
3
T
1
1
4
D
1
1
5
F
1
1
6
K
1
5
3
H
1
5
5
N
1
5
6
M
1
5
8
I
1
6
9
D
1
7
0
W
1
7
1
[1]1daw.a * . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1day.a * . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1ds5.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . * .
[1]1ds5.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . * .
[1]1jam.a . . . . . . . . . . . . . . . . . . . . . . . . . . * . . .
[1]1lpu.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1m2p.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1m2q.a . . . . . * . . . . . . . . . . . . . . . . . . . . . . . .
[1]1m2r.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1om1.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1zoe.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1zog.a . . . . . . . . . . . . . . . . . . . . . * . . . . . . * .
[1]1zoh.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . * .
[1]2oxd.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2oxx.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2oxy.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2pvh.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2pvj.a . . . . . . . . . . . * . . . . . . . . . . . . . . . . * .
[1]2pvk.a . . . . . . . . . . . * . . . . . . . . . . . . . . . . * .
[1]2pvl.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . * .
[1]2pvm.a . . . . . . . . . . . * . . . . . . . . . . . . . . . . * .
[1]2pvn.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2qc6.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3be9.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3kxg.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3kxh.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3kxm.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3kxn.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3pvg.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3pwd.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3pzh.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4anm.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4dgm.a * . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4dgn.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4dgo.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4rlk.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1j91.b . . . . . . . . . . . . . . . . . . . * . . . . * . . . . .
[3]3fl5.a . . . * * * . . . . . . . . . . . * . . . . . . * . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1daw.a:anp,mg
1day.a:gnp,mg
1ds5.a:amp
1ds5.b:amp,mg
1jam.a is apo
1lpu.a:ben
1m2p.a:hna
1m2q.a:mnx
1m2r.a:mny
1om1.a:iqa
1zoe.a:k25
1zog.a:k37
1zoh.a:k44,na
2oxd.a:k32
2oxx.a:k22
2oxy.a:k17
2pvh.a:p19
2pvj.a:p44
2pvk.a:p45
2pvl.a:p55
2pvm.a:p29
2pvn.a:p63
2qc6.a:g12
3be9.a:p04
3kxg.a:k6x
3kxh.a:k66
3kxm.a:k74
3kxn.a:k8x
3pvg.a:k68
3pwd.a:cz0
3pzh.a:emo
4anm.a:wul
4dgm.a:agi
4dgn.a:lu2
4dgo.a:0jw
4rlk.a:e91
1j91.b:tbs
3fl5.a:txq
[1] 1daw.a
0.7
0.5 0.3 0.2 - 0 0 0 0.2 0.4 0 0.4 0.2 0.1 0.1 0.1 0 0.1 0.1 0 0.9 0.1 0 0 0.2 0.3 0.2 0.2 0 0 0.2 0.1 0 0 0 0.4 0 0
[1] 1day.a 0.7
0.4
0.6 0.3 - 0.3 0.4 0.2 0.1 0.6 0.2 0.7 0.3 0.2 0.2 0.1 0 0.3 0.2 0.3 1.5 0.3 0.3 0.2 0.1 0.5 0.2 0.2 0.1 0.2 0.2 0.2 0.1 0.3 0.3 1.0 0 0.2
[1] 1ds5.a 1.3 1.2
0.1
0.5 - 0.2 0.1 0.1 0.1 0.3 0.2 0.2 0.2 0.2 0.2 0.2 0.1 0.1 0.1 0.1 0 0.3 0.1 0 0.2 0.4 0.1 0.2 0.2 0.1 0.1 0.2 0.1 0.1 0.1 0.3 0 0
[1] 1ds5.b 1.1 1.3 0.1
0
- 0.2 0 0 0.2 0.3 0.1 0.3 0.2 0.2 0.2 0.1 0.1 0 0.1 0 0.1 0.1 0 0.1 0.1 0.3 0.1 0.2 0.2 0 0.1 0.1 0 0 0 0.3 0 0
[1] 1jam.a 1.7 2.0 1.0 1.3
-
0.3 0.5 0.7 1.2 1.0 1.1 1.4 1.3 1.4 1.2 1.3 1.2 1.6 1.5 1.4 2.1 1.4 0.8 1.7 1.4 1.3 1.3 1.5 1.2 0.8 0.7 0.9 0.9 0.9 1.0 1.0 0.7 0.7
[1] 1lpu.a 1.1 1.1 0.4 0.9 -
0
0 0.2 1.1 0.6 0.7 0.8 1.2 0.9 1.0 0.8 1.0 0.7 0.7 0.7 1.3 0.7 0.4 0.9 0.9 0.6 0.8 0.7 0.8 0.2 0.3 0.4 0.5 0.5 0.3 0.2 0.2 0.2
[1] 1m2p.a 0.8 0.8 0.3 0.8 - 0
0
0 0.7 0.5 0.3 0.4 0.5 0.3 0.3 0.4 0.8 0.3 0.5 0.3 0.7 0.5 0.2 0.7 0.6 0.2 0.6 0.5 0.4 0.1 0 0.1 0.1 0.1 0.1 0.2 0 0
[1] 1m2q.a 2.5 2.6 0.1 2.1 - 0 0
0
1.3 0.7 0.5 0.8 1.1 0.9 0.9 0.8 1.0 0.4 0.4 0.5 0.6 0.6 0.3 0.9 1.0 0.7 1.3 0.8 0.7 0.2 0.1 0.8 0.5 0.5 0.3 0.3 0.1 0
[1] 1m2r.a 0.7 0.9 0.2 0.4 - 0.3 0.2 0.1
0
0.6 0.1 0.3 0.3 0.1 0.2 0.1 0 0.1 0.6 0.1 1.2 0.8 0.2 0.6 0.1 0.5 0.1 0.2 0.4 0.3 0.2 0.3 0.1 0.1 0.1 0.4 0.3 0.1
[1] 1om1.a 0.6 0.7 0.2 0.4 - 0 0.1 0 0.3
0.1
0.1 0.3 0.6 0.2 0.1 0.2 0.2 0.1 0.4 0.1 0.7 0.1 0 0.4 0.2 0.1 0.2 0.3 0.2 0 0 0.1 0.1 0.1 0 0.1 0 0
[1] 1zoe.a 0.7 1.1 0.1 0.1 - 0 0 0 0.1 0.3
0
0.2 0 0 0.1 0 0 0 0.4 0 0.3 0.2 0 0 0 0.3 0.1 0.2 0 0 0.1 0 0 0 0 0.1 0 0
[1] 1zog.a 0.7 1.2 0.2 0 - 0 0 0 0.3 0.3 0.2
0.2
0.2 0.1 0.1 0.1 0.3 0 0.8 0 0.4 0.1 0 0.1 0.1 0.3 0.1 0.3 0.1 0 0.2 0 0.1 0.1 0 0.2 0 0
[1] 1zoh.a 1.5 1.4 0.1 2.0 - 0.5 1.2 1.1 0 1.2 0.3 0.5
0.1
0.1 0.1 0 0 0 0.4 0 0 1.7 1.1 0.8 0 1.3 0.2 0.1 0.9 0.9 0.5 1.1 0.3 0.7 0.5 0.6 1.0 0.8
[1] 2oxd.a 0.7 1.1 0.2 0.2 - 0 0 0.1 0.2 0.6 0.1 0.2 0.1
0.1
0.2 0.1 0 0 0.4 0 0.3 0.2 0.1 0.1 0.1 0.4 0 0.5 0.2 0.1 0.2 0.1 0 0.2 0.1 0.1 0 0.1
[1] 2oxx.a 0.7 0.9 0.3 0.1 - 0 0 0.1 0.1 0.2 0 0.3 0.2 0.1
0.1
0.1 0 0.1 0.4 0.1 0.2 0.2 0.1 0.1 0.1 0.3 0 0.2 0 0.2 0.2 0 0.1 0.2 0.1 0.2 0.1 0.1
[1] 2oxy.a 0.4 0.8 0.1 0.3 - 0 0 0 0.2 0.3 0 0.3 0.1 0.1 0.1
0.1
0 0 0.4 0 0 0.1 0 0 0.1 0.1 0 0.1 0 0 0 0.1 0 0 0 0.3 0 0
[1] 2pvh.a 0.9 0.7 0.3 0.5 - 0 0.1 0 0.1 0.2 0.1 0.5 0.3 0.3 0.3 0.2
0
0.1 0.2 0.1 0.9 0.3 0 0.2 0.1 0.5 0.2 0.3 0.1 0 0.1 0.1 0 0 0 0.2 0.1 0
[1] 2pvj.a 1.8 1.7 0.8 2.0 - 1.4 2.0 2.1 1.2 2.2 1.5 2.2 1.8 1.0 0.6 1.5 0.2
0
0 0 0.4 2.7 2.0 2.5 2.0 3.4 1.8 1.2 2.8 2.1 1.3 2.4 1.7 1.8 1.7 1.9 2.4 1.9
[1] 2pvk.a 1.8 1.8 0.5 2.7 - 1.5 2.1 2.0 1.0 2.3 1.6 2.0 1.6 0.8 0.6 1.2 0.1 0
0
0 0.4 2.9 2.3 2.5 1.6 3.2 1.9 1.1 3.0 2.1 1.3 2.3 1.6 2.0 1.7 1.8 2.3 2.1
[1] 2pvl.a 1.0 1.0 0.2 1.2 - 0.3 0.7 0.7 0.2 0.9 0.2 0.4 0.2 0.2 0.1 0.2 0.1 0 0.1
0
0.5 0.7 0.5 0.5 0.2 0.8 0.1 0.2 0.6 0.6 0.2 0.5 0.1 0.5 0.4 0.3 0.4 0.4
[1] 2pvm.a 1.8 1.6 0.3 2.7 - 0.8 1.4 1.4 0.1 1.4 0.5 1.2 0.3 0.2 0.1 0.2 0.1 0 0 0
0
1.6 1.6 0.9 0.4 1.9 0.6 0.2 1.5 1.1 0.6 1.6 0.5 1.2 0.7 0.8 1.4 1.0
[1] 2pvn.a 0.5 0.4 0.2 0.6 - 0.1 0.2 0.3 0.2 0.5 0.2 0.4 0.2 0.1 0.1 0.1 0 0 0.1 0 0.7
0
0.2 0 0.2 0.6 0.3 0.4 0.2 0.1 0.1 0.1 0.2 0.2 0.2 0.3 0.1 0.1
[1] 2qc6.a 0.8 0.9 0.2 0.3 - 0 0 0 0.2 0.2 0.1 0.5 0.3 0.1 0.1 0.1 0.2 0.1 0.5 0.1 0.6 0.2
0
0.3 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.1 0.1 0.1 0 0.2 0 0
[1] 3be9.a 0.5 0.4 0.2 0.5 - 0 0.1 0.1 0.2 0.4 0 0.3 0.1 0.1 0.1 0 0 0 0 0 0 0 0
0
0.1 0.4 0 0.1 0.1 0 0.1 0 0 0 0 0.4 0 0
[1] 3kxg.a 0.7 0.7 0.2 0.3 - 0 0 0 0 0.3 0 0.1 0.1 0.1 0.1 0.1 0 0 0.1 0 0.3 0.2 0 0
0.1
0.2 0 0.1 0.1 0 0.1 0 0 0 0 0 0 0
[1] 3kxh.a 0.8 1.1 0.1 0 - 0 0 0 0.2 0.3 0.1 0.4 0.1 0.1 0.1 0.1 0 0 0 0 0.5 0 0 0.1 0.1
0.2
0.1 0.1 0 0 0.1 0 0.1 0.1 0 0.2 0 0
[1] 3kxm.a 0.7 0.7 0.3 0.4 - 0 0 0.1 0 0.4 0.2 0.3 0.1 0.2 0.1 0.2 0 0 0 0 0.1 0.3 0.1 0 0.1 0.6
0
0.4 0.1 0.1 0.1 0.1 0 0.1 0.1 0 0 0.1
[1] 3kxn.a 0.7 0.9 0.2 0.2 - 0.1 0 0 0 0.1 0 0.3 0.1 0 0.1 0 0 0 0.4 0 0.1 0 0 0 0 0.4 0.1
0.1
0.1 0 0.1 0.1 0 0 0 0.1 0 0
[1] 3pvg.a 0.8 1.0 0.3 0.3 - 0 0 0 0.1 0.2 0.1 0.3 0.1 0.1 0.1 0.1 0.1 0 0.1 0 0.5 0.1 0 0.2 0.1 0.1 0.2 0.3
0.2
0 0.2 0.2 0 0 0 0.1 0 0
[1] 3pwd.a 1.0 1.0 0.2 0.8 - 0 0 0 0.7 0.3 0.3 0.3 0.5 0.3 0.3 0.3 0.7 0.2 0.3 0.2 0.3 0.4 0.1 0.5 0.5 0.3 0.5 0.3 0.2
0
0.1 0.1 0.1 0.1 0.1 0 0 0
[1] 3pzh.a 0.9 1.0 0.3 1.0 - 0.1 0 0 0.7 0.6 0.5 0.8 0.8 0.4 0.3 0.6 0.7 0.2 0.3 0.2 0.9 0.7 0.1 0.6 0.5 0.3 0.6 0.4 0.4 0.1
0
0.2 0.1 0.1 0.1 0.2 0 0
[1] 4anm.a 0.7 1.0 0.3 0.3 - 0 0 0 0.1 0.4 0 0.4 0.1 0.1 0.1 0.1 0 0.2 0.6 0 0.3 0.1 0 0 0.1 0.3 0.1 0.2 0 0 0.2
0
0.1 0.1 0 0.2 0 0
[1] 4dgm.a 0.8 1.1 0.2 0.6 - 0 0 0 0 0.2 0 0.3 0.2 0.2 0.1 0.2 0 0 0.1 0.1 1.0 0.2 0 0.3 0.1 0.3 0.1 0.2 0.1 0 0.1 0.1
0
0 0 0.3 0 0
[1] 4dgn.a 0.8 1.1 0.2 0.5 - 0 0 0 0 0.3 0 0.2 0.1 0.1 0.1 0.2 0 0 0.4 0 0.7 0.2 0 0.1 0.1 0.3 0.1 0.2 0.1 0 0.1 0.1 0
0
0 0.3 0 0
[1] 4dgo.a 0.8 1.2 0.3 0.5 - 0 0 0 0.1 0.3 0.1 0.2 0.2 0.1 0.1 0.2 0 0.3 0.5 0.2 1.0 0.3 0 0.2 0.1 0.4 0.2 0.3 0.2 0.1 0.1 0.2 0.1 0.1
0
0.9 0 0
[1] 4rlk.a 0.9 0.9 0.3 0.5 - 0 0 0 0.1 0.3 0.2 0.1 0.2 0.2 0.2 0.2 0.1 0.1 0.1 0.2 0.5 0.3 0.1 0.2 0.2 0.3 0.1 0.3 0.2 0 0.2 0.2 0.1 0.1 0.1
0
0.2 0
[2] 1j91.b 2.8 4.5 2.7 2.2 - 0 0.1 0 2.4 1.5 0.9 1.0 1.9 1.2 1.5 0.9 5.2 5.2 4.5 6.2 3.7 3.8 0.1 3.5 1.8 0.5 1.8 1.7 0.7 0.2 0.1 0.9 1.9 1.6 0.6 3.6
0
0.1
[3] 3fl5.a 6.9 7.6 3.3 5.7 - 0 2.1 1.9 1.7 0.8 2.2 2.6 1.4 1.2 1.9 1.0 2.8 2.4 1.9 3.1 2.5 2.8 0.3 2.6 1.3 2.4 3.7 1.5 0.8 0.1 0.1 2.9 0.4 0.4 0.5 0.8 1.1
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (3 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1daw.a
1day.a
1ds5.a
1ds5.b
1jam.a
1lpu.a
1m2p.a
1m2q.a
1m2r.a
1om1.a
1zoe.a
1zog.a
1zoh.a
2oxd.a
2oxx.a
2oxy.a
2pvh.a
2pvj.a
2pvk.a
2pvl.a
2pvm.a
2pvn.a
2qc6.a
3be9.a
3kxg.a
3kxh.a
3kxm.a
3kxn.a
3pvg.a
3pwd.a
3pzh.a
4anm.a
4dgm.a
4dgn.a
4dgo.a
4rlk.a
1j91.b
3fl5.a
[1] 1daw.a
0
.04 .07 .07 .12 .08 .09 .16 .08 .08 .07 .09 .12 .08 .06 .07 .04 .13 .14 .06 .11 .04 .07 .05 .05 .06 .07 .07 .06 .08 .09 .06 .02 .05 .07 .06 .32 .39
[1] 1day.a .04
0
.11 .11 .15 .12 .13 .19 .11 .12 .11 .13 .15 .11 .10 .11 .07 .15 .16 .09 .14 .07 .11 .09 .09 .10 .09 .10 .09 .12 .12 .10 .06 .09 .09 .10 .35 .41
[1] 1ds5.a .07 .11
0
.01 .13 .10 .09 .13 .09 .09 .04 .07 .07 .05 .04 .04 .06 .11 .12 .05 .08 .06 .06 .04 .05 .04 .05 .04 .06 .06 .10 .06 .05 .06 .07 .07 .30 .38
[1] 1ds5.b .07 .11 .01
0
.13 .10 .09 .14 .09 .08 .04 .07 .07 .04 .04 .03 .07 .11 .12 .04 .09 .05 .06 .04 .06 .04 .06 .04 .06 .06 .10 .04 .06 .06 .07 .07 .30 .39
[1] 1jam.a .12 .15 .13 .13
0
.09 .12 .18 .13 .11 .13 .14 .18 .13 .12 .14 .08 .20 .21 .12 .20 .11 .10 .13 .10 .13 .11 .13 .08 .14 .10 .13 .11 .11 .12 .09 .34 .37
[1] 1lpu.a .08 .12 .10 .10 .09
0
.06 .12 .10 .07 .10 .12 .16 .11 .09 .12 .05 .17 .19 .09 .17 .09 .06 .10 .06 .10 .08 .10 .06 .06 .04 .10 .07 .07 .08 .06 .31 .33
[1] 1m2p.a .09 .13 .09 .09 .12 .06
0
.11 .11 .04 .08 .10 .13 .08 .07 .09 .07 .16 .18 .09 .15 .08 .05 .09 .06 .10 .07 .08 .06 .04 .04 .08 .09 .09 .11 .07 .28 .33
[1] 1m2q.a .16 .19 .13 .14 .18 .12 .11
0
.18 .14 .15 .18 .19 .16 .15 .15 .13 .22 .24 .16 .21 .16 .13 .15 .13 .16 .13 .16 .13 .12 .12 .16 .15 .16 .16 .15 .32 .26
[1] 1m2r.a .08 .11 .09 .09 .13 .10 .11 .18
0
.09 .07 .10 .09 .09 .07 .09 .06 .14 .15 .08 .14 .09 .06 .12 .08 .09 .09 .08 .08 .10 .09 .08 .06 .05 .06 .09 .36 .40
[1] 1om1.a .08 .12 .09 .08 .11 .07 .04 .14 .09
0
.06 .08 .11 .08 .06 .07 .06 .16 .17 .09 .16 .07 .03 .08 .06 .08 .07 .06 .05 .07 .07 .06 .09 .07 .08 .06 .31 .36
[1] 1zoe.a .07 .11 .04 .04 .13 .10 .08 .15 .07 .06
0
.06 .06 .02 .02 .04 .07 .12 .14 .05 .10 .07 .04 .06 .06 .05 .06 .03 .07 .06 .10 .02 .07 .05 .06 .08 .30 .38
[1] 1zog.a .09 .13 .07 .07 .14 .12 .10 .18 .10 .08 .06
0
.09 .05 .06 .06 .09 .14 .15 .06 .13 .08 .08 .08 .06 .06 .08 .06 .08 .07 .11 .06 .09 .06 .09 .08 .32 .41
[1] 1zoh.a .12 .15 .07 .07 .18 .16 .13 .19 .09 .11 .06 .09
0
.06 .07 .06 .11 .07 .09 .06 .05 .10 .10 .09 .09 .08 .09 .08 .11 .10 .13 .08 .12 .10 .10 .13 .34 .42
[1] 2oxd.a .08 .11 .05 .04 .13 .11 .08 .16 .09 .08 .02 .05 .06
0
.02 .04 .08 .12 .13 .05 .10 .07 .06 .06 .06 .05 .05 .03 .07 .07 .10 .03 .08 .06 .08 .08 .31 .38
[1] 2oxx.a .06 .10 .04 .04 .12 .09 .07 .15 .07 .06 .02 .06 .07 .02
0
.03 .06 .12 .14 .05 .10 .05 .04 .05 .04 .05 .04 .01 .05 .04 .09 .02 .06 .04 .07 .07 .29 .37
[1] 2oxy.a .07 .11 .04 .03 .14 .12 .09 .15 .09 .07 .04 .06 .06 .04 .03
0
.09 .13 .14 .06 .09 .05 .07 .03 .06 .05 .07 .03 .08 .06 .12 .03 .08 .06 .07 .09 .29 .41
[1] 2pvh.a .04 .07 .06 .07 .08 .05 .07 .13 .06 .06 .07 .09 .11 .08 .06 .09
0
.13 .14 .05 .13 .05 .04 .07 .03 .06 .05 .07 .03 .08 .06 .07 .03 .04 .05 .04 .32 .35
[1] 2pvj.a .13 .15 .11 .11 .20 .17 .16 .22 .14 .16 .12 .14 .07 .12 .12 .13 .13
0
.02 .08 .03 .12 .15 .12 .11 .11 .11 .12 .13 .14 .14 .13 .13 .14 .15 .14 .36 .43
[1] 2pvk.a .14 .16 .12 .12 .21 .19 .18 .24 .15 .17 .14 .15 .09 .13 .14 .14 .14 .02
0
.10 .04 .13 .16 .13 .13 .13 .12 .14 .14 .15 .16 .15 .14 .15 .16 .16 .38 .45
[1] 2pvl.a .06 .09 .05 .04 .12 .09 .09 .16 .08 .09 .05 .06 .06 .05 .05 .06 .05 .08 .10
0
.08 .04 .08 .06 .04 .04 .05 .06 .06 .07 .09 .06 .05 .05 .06 .08 .31 .39
[1] 2pvm.a .11 .14 .08 .09 .20 .17 .15 .21 .14 .16 .10 .13 .05 .10 .10 .09 .13 .03 .04 .08
0
.10 .14 .09 .11 .10 .10 .10 .13 .12 .14 .11 .12 .13 .14 .13 .34 .43
[1] 2pvn.a .04 .07 .06 .05 .11 .09 .08 .16 .09 .07 .07 .08 .10 .07 .05 .05 .05 .12 .13 .04 .10
0
.07 .03 .04 .04 .06 .05 .05 .07 .09 .05 .05 .05 .08 .06 .31 .40
[1] 2qc6.a .07 .11 .06 .06 .10 .06 .05 .13 .06 .03 .04 .08 .10 .06 .04 .07 .04 .15 .16 .08 .14 .07
0
.07 .05 .08 .05 .05 .05 .06 .06 .05 .06 .05 .05 .05 .32 .35
[1] 3be9.a .05 .09 .04 .04 .13 .10 .09 .15 .12 .08 .06 .08 .09 .06 .05 .03 .07 .12 .13 .06 .09 .03 .07
0
.04 .04 .05 .04 .06 .06 .10 .05 .06 .07 .09 .07 .28 .39
[1] 3kxg.a .05 .09 .05 .06 .10 .06 .06 .13 .08 .06 .06 .06 .09 .06 .04 .06 .03 .11 .13 .04 .11 .04 .05 .04
0
.04 .03 .04 .03 .04 .06 .06 .05 .05 .07 .03 .30 .37
[1] 3kxh.a .06 .10 .04 .04 .13 .10 .10 .16 .09 .08 .05 .06 .08 .05 .05 .05 .06 .11 .13 .04 .10 .04 .08 .04 .04
0
.07 .05 .06 .07 .10 .05 .06 .07 .08 .06 .29 .40
[1] 3kxm.a .07 .09 .05 .06 .11 .08 .07 .13 .09 .07 .06 .08 .09 .05 .04 .07 .05 .11 .12 .05 .10 .06 .05 .05 .03 .07
0
.05 .04 .06 .07 .06 .07 .07 .08 .06 .30 .35
[1] 3kxn.a .07 .10 .04 .04 .13 .10 .08 .16 .08 .06 .03 .06 .08 .03 .01 .03 .07 .12 .14 .06 .10 .05 .05 .04 .04 .05 .05
0
.06 .05 .10 .02 .07 .05 .08 .06 .29 .38
[1] 3pvg.a .06 .09 .06 .06 .08 .06 .06 .13 .08 .05 .07 .08 .11 .07 .05 .08 .03 .13 .14 .06 .13 .05 .05 .06 .03 .06 .04 .06
0
.06 .05 .06 .05 .05 .07 .03 .32 .35
[1] 3pwd.a .08 .12 .06 .06 .14 .06 .04 .12 .10 .07 .06 .07 .10 .07 .04 .06 .08 .14 .15 .07 .12 .07 .06 .06 .04 .07 .06 .05 .06
0
.06 .06 .08 .07 .10 .07 .27 .35
[1] 3pzh.a .09 .12 .10 .10 .10 .04 .04 .12 .09 .07 .10 .11 .13 .10 .09 .12 .06 .14 .16 .09 .14 .09 .06 .10 .06 .10 .07 .10 .05 .06
0
.10 .08 .09 .08 .06 .30 .32
[1] 4anm.a .06 .10 .06 .04 .13 .10 .08 .16 .08 .06 .02 .06 .08 .03 .02 .03 .07 .13 .15 .06 .11 .05 .05 .05 .06 .05 .06 .02 .06 .06 .10
0
.07 .05 .07 .07 .29 .38
[1] 4dgm.a .02 .06 .05 .06 .11 .07 .09 .15 .06 .09 .07 .09 .12 .08 .06 .08 .03 .13 .14 .05 .12 .05 .06 .06 .05 .06 .07 .07 .05 .08 .08 .07
0
.03 .04 .06 .32 .38
[1] 4dgn.a .05 .09 .06 .06 .11 .07 .09 .16 .05 .07 .05 .06 .10 .06 .04 .06 .04 .14 .15 .05 .13 .05 .05 .07 .05 .07 .07 .05 .05 .07 .09 .05 .03
0
.02 .06 .33 .39
[1] 4dgo.a .07 .09 .07 .07 .12 .08 .11 .16 .06 .08 .06 .09 .10 .08 .07 .07 .05 .15 .16 .06 .14 .08 .05 .09 .07 .08 .08 .08 .07 .10 .08 .07 .04 .02
0
.08 .35 .39
[1] 4rlk.a .06 .10 .07 .07 .09 .06 .07 .15 .09 .06 .08 .08 .13 .08 .07 .09 .04 .14 .16 .08 .13 .06 .05 .07 .03 .06 .06 .06 .03 .07 .06 .07 .06 .06 .08
0
.30 .35
[2] 1j91.b .32 .35 .30 .30 .34 .31 .28 .32 .36 .31 .30 .32 .34 .31 .29 .29 .32 .36 .38 .31 .34 .31 .32 .28 .30 .29 .30 .29 .32 .27 .30 .29 .32 .33 .35 .30
0
.32
[3] 3fl5.a .39 .41 .38 .39 .37 .33 .33 .26 .40 .36 .38 .41 .42 .38 .37 .41 .35 .43 .45 .39 .43 .40 .35 .39 .37 .40 .35 .38 .35 .35 .32 .38 .38 .39 .39 .35 .32
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1daw.a
1day.a
1ds5.a
1ds5.b
1jam.a
1lpu.a
1m2p.a
1m2q.a
1m2r.a
1om1.a
1zoe.a
1zog.a
1zoh.a
2oxd.a
2oxx.a
2oxy.a
2pvh.a
2pvj.a
2pvk.a
2pvl.a
2pvm.a
2pvn.a
2qc6.a
3be9.a
3kxg.a
3kxh.a
3kxm.a
3kxn.a
3pvg.a
3pwd.a
3pzh.a
4anm.a
4dgm.a
4dgn.a
4dgo.a
4rlk.a
1j91.b
3fl5.a
[1] 1daw.a
0
0.2 0.7 0.7 0.8 0.7 0.8 0.9 0.8 0.9 0.5 0.6 0.6 0.5 0.5 1.0 0.6 0.8 0.7 0.6 0.6 0.4 0.6 0.3 0.5 0.5 0.6 0.5 0.6 0.9 0.7 0.5 0.5 0.5 0.5 0.8 1.0 1.4
[1] 1day.a 0.2
0
0.7 0.7 0.8 0.8 0.9 1.0 0.8 0.9 0.6 0.6 0.6 0.5 0.6 1.0 0.6 0.8 0.6 0.6 0.6 0.4 0.7 0.4 0.6 0.5 0.7 0.5 0.6 0.9 0.8 0.5 0.5 0.5 0.5 0.8 1.0 1.5
[1] 1ds5.a 0.7 0.7
0
0.2 0.9 0.7 0.8 0.8 0.8 0.9 0.6 0.6 0.6 0.6 0.6 1.0 0.7 0.8 0.8 0.7 0.6 0.6 0.7 0.5 0.6 0.6 0.7 0.5 0.7 0.8 0.8 0.6 0.6 0.6 0.6 0.8 0.9 1.3
[1] 1ds5.b 0.7 0.7 0.2
0
0.9 0.7 0.8 0.8 0.8 0.9 0.6 0.6 0.6 0.6 0.6 1.1 0.7 0.9 0.8 0.7 0.6 0.6 0.7 0.5 0.6 0.5 0.7 0.5 0.7 0.8 0.8 0.6 0.6 0.6 0.6 0.8 0.9 1.3
[1] 1jam.a 0.8 0.8 0.9 0.9
0
0.6 0.7 1.0 0.6 0.7 0.7 0.7 0.9 0.6 0.5 1.4 0.5 0.8 0.8 0.7 0.8 0.6 0.5 0.8 0.6 0.7 0.5 0.7 0.6 0.7 0.5 0.6 0.5 0.6 0.6 0.7 1.0 1.2
[1] 1lpu.a 0.7 0.8 0.7 0.7 0.6
0
0.4 0.7 0.7 0.5 0.6 0.7 0.8 0.6 0.5 1.3 0.4 0.9 0.9 0.7 0.8 0.6 0.3 0.7 0.4 0.6 0.5 0.5 0.2 0.6 0.2 0.6 0.5 0.4 0.5 0.5 0.9 1.1
[1] 1m2p.a 0.8 0.9 0.8 0.8 0.7 0.4
0
0.8 0.6 0.2 0.7 0.8 0.9 0.7 0.6 1.5 0.5 0.9 0.9 0.8 0.9 0.7 0.4 0.8 0.6 0.8 0.5 0.7 0.4 0.4 0.4 0.7 0.7 0.6 0.7 0.7 1.0 1.1
[1] 1m2q.a 0.9 1.0 0.8 0.8 1.0 0.7 0.8
0
1.1 0.8 0.9 0.9 1.1 0.9 0.8 1.4 0.8 1.2 1.2 1.0 1.0 0.8 0.8 0.9 0.8 0.8 0.8 0.8 0.7 0.9 0.7 0.8 0.8 0.8 0.8 0.8 0.9 0.8
[1] 1m2r.a 0.8 0.8 0.8 0.8 0.6 0.7 0.6 1.1
0
0.6 0.6 0.7 0.8 0.6 0.5 1.4 0.4 0.7 0.7 0.6 0.7 0.6 0.5 0.8 0.5 0.7 0.5 0.6 0.5 0.6 0.6 0.6 0.6 0.6 0.6 0.7 1.1 1.4
[1] 1om1.a 0.9 0.9 0.9 0.9 0.7 0.5 0.2 0.8 0.6
0
0.8 0.8 1.0 0.8 0.6 1.5 0.5 0.9 0.9 0.9 0.9 0.8 0.4 0.9 0.7 0.8 0.6 0.8 0.5 0.5 0.5 0.7 0.7 0.7 0.8 0.7 1.0 1.1
[1] 1zoe.a 0.5 0.6 0.6 0.6 0.7 0.6 0.7 0.9 0.6 0.8
0
0.6 0.6 0.5 0.4 1.2 0.5 0.7 0.6 0.5 0.5 0.4 0.5 0.4 0.5 0.4 0.5 0.4 0.6 0.8 0.6 0.3 0.4 0.4 0.4 0.7 0.9 1.3
[1] 1zog.a 0.6 0.6 0.6 0.6 0.7 0.7 0.8 0.9 0.7 0.8 0.6
0
0.6 0.3 0.5 1.1 0.6 0.8 0.7 0.6 0.6 0.5 0.6 0.5 0.4 0.5 0.5 0.5 0.6 0.7 0.7 0.5 0.5 0.5 0.6 0.7 0.9 1.3
[1] 1zoh.a 0.6 0.6 0.6 0.6 0.9 0.8 0.9 1.1 0.8 1.0 0.6 0.6
0
0.6 0.6 0.9 0.7 0.7 0.5 0.5 0.4 0.6 0.8 0.5 0.5 0.5 0.6 0.5 0.7 0.8 0.8 0.6 0.6 0.6 0.7 0.9 1.1 1.6
[1] 2oxd.a 0.5 0.5 0.6 0.6 0.6 0.6 0.7 0.9 0.6 0.8 0.5 0.3 0.6
0
0.3 1.1 0.5 0.7 0.6 0.5 0.6 0.4 0.5 0.5 0.3 0.4 0.3 0.3 0.5 0.7 0.6 0.4 0.3 0.3 0.4 0.6 0.9 1.3
[1] 2oxx.a 0.5 0.6 0.6 0.6 0.5 0.5 0.6 0.8 0.5 0.6 0.4 0.5 0.6 0.3
0
1.2 0.3 0.6 0.6 0.4 0.5 0.4 0.3 0.5 0.3 0.5 0.3 0.4 0.4 0.6 0.4 0.3 0.3 0.3 0.4 0.5 0.9 1.2
[1] 2oxy.a 1.0 1.0 1.0 1.1 1.4 1.3 1.5 1.4 1.4 1.5 1.2 1.1 0.9 1.1 1.2
0
1.4 1.4 1.2 1.3 1.1 1.2 1.3 1.0 1.2 1.0 1.3 1.1 1.2 1.4 1.4 1.2 1.2 1.2 1.2 1.4 1.4 2.0
[1] 2pvh.a 0.6 0.6 0.7 0.7 0.5 0.4 0.5 0.8 0.4 0.5 0.5 0.6 0.7 0.5 0.3 1.4
0
0.7 0.7 0.5 0.6 0.5 0.3 0.6 0.3 0.6 0.3 0.5 0.3 0.6 0.3 0.5 0.3 0.3 0.4 0.5 1.0 1.2
[1] 2pvj.a 0.8 0.8 0.8 0.9 0.8 0.9 0.9 1.2 0.7 0.9 0.7 0.8 0.7 0.7 0.6 1.4 0.7
0
0.2 0.3 0.4 0.6 0.8 0.7 0.7 0.8 0.7 0.7 0.8 0.8 0.9 0.7 0.7 0.8 0.8 0.9 1.2 1.5
[1] 2pvk.a 0.7 0.6 0.8 0.8 0.8 0.9 0.9 1.2 0.7 0.9 0.6 0.7 0.5 0.6 0.6 1.2 0.7 0.2
0
0.3 0.3 0.5 0.8 0.6 0.6 0.7 0.6 0.6 0.8 0.8 0.8 0.6 0.7 0.7 0.7 0.9 1.1 1.6
[1] 2pvl.a 0.6 0.6 0.7 0.7 0.7 0.7 0.8 1.0 0.6 0.9 0.5 0.6 0.5 0.5 0.4 1.3 0.5 0.3 0.3
0
0.3 0.4 0.7 0.6 0.5 0.6 0.5 0.5 0.6 0.7 0.7 0.6 0.5 0.5 0.6 0.7 1.1 1.5
[1] 2pvm.a 0.6 0.6 0.6 0.6 0.8 0.8 0.9 1.0 0.7 0.9 0.5 0.6 0.4 0.6 0.5 1.1 0.6 0.4 0.3 0.3
0
0.4 0.7 0.5 0.5 0.6 0.5 0.5 0.7 0.8 0.8 0.6 0.6 0.6 0.7 0.8 1.1 1.5
[1] 2pvn.a 0.4 0.4 0.6 0.6 0.6 0.6 0.7 0.8 0.6 0.8 0.4 0.5 0.6 0.4 0.4 1.2 0.5 0.6 0.5 0.4 0.4
0
0.5 0.3 0.4 0.4 0.4 0.4 0.5 0.8 0.6 0.4 0.3 0.4 0.4 0.6 0.9 1.3
[1] 2qc6.a 0.6 0.7 0.7 0.7 0.5 0.3 0.4 0.8 0.5 0.4 0.5 0.6 0.8 0.5 0.3 1.3 0.3 0.8 0.8 0.7 0.7 0.5
0
0.7 0.4 0.6 0.4 0.5 0.3 0.6 0.3 0.5 0.4 0.3 0.4 0.5 0.9 1.1
[1] 3be9.a 0.3 0.4 0.5 0.5 0.8 0.7 0.8 0.9 0.8 0.9 0.4 0.5 0.5 0.5 0.5 1.0 0.6 0.7 0.6 0.6 0.5 0.3 0.7
0
0.5 0.4 0.6 0.4 0.6 0.8 0.7 0.4 0.5 0.5 0.5 0.7 0.9 1.4
[1] 3kxg.a 0.5 0.6 0.6 0.6 0.6 0.4 0.6 0.8 0.5 0.7 0.5 0.4 0.5 0.3 0.3 1.2 0.3 0.7 0.6 0.5 0.5 0.4 0.4 0.5
0
0.5 0.2 0.3 0.3 0.5 0.4 0.4 0.3 0.3 0.4 0.5 0.9 1.3
[1] 3kxh.a 0.5 0.5 0.6 0.5 0.7 0.6 0.8 0.8 0.7 0.8 0.4 0.5 0.5 0.4 0.5 1.0 0.6 0.8 0.7 0.6 0.6 0.4 0.6 0.4 0.5
0
0.6 0.3 0.5 0.8 0.7 0.3 0.5 0.4 0.4 0.7 0.8 1.3
[1] 3kxm.a 0.6 0.7 0.7 0.7 0.5 0.5 0.5 0.8 0.5 0.6 0.5 0.5 0.6 0.3 0.3 1.3 0.3 0.7 0.6 0.5 0.5 0.4 0.4 0.6 0.2 0.6
0
0.4 0.4 0.6 0.4 0.4 0.3 0.3 0.5 0.4 1.0 1.2
[1] 3kxn.a 0.5 0.5 0.5 0.5 0.7 0.5 0.7 0.8 0.6 0.8 0.4 0.5 0.5 0.3 0.4 1.1 0.5 0.7 0.6 0.5 0.5 0.4 0.5 0.4 0.3 0.3 0.4
0
0.4 0.6 0.6 0.4 0.3 0.3 0.4 0.6 0.9 1.3
[1] 3pvg.a 0.6 0.6 0.7 0.7 0.6 0.2 0.4 0.7 0.5 0.5 0.6 0.6 0.7 0.5 0.4 1.2 0.3 0.8 0.8 0.6 0.7 0.5 0.3 0.6 0.3 0.5 0.4 0.4
0
0.5 0.2 0.5 0.4 0.3 0.5 0.5 0.9 1.2
[1] 3pwd.a 0.9 0.9 0.8 0.8 0.7 0.6 0.4 0.9 0.6 0.5 0.8 0.7 0.8 0.7 0.6 1.4 0.6 0.8 0.8 0.7 0.8 0.8 0.6 0.8 0.5 0.8 0.6 0.6 0.5
0
0.5 0.7 0.7 0.7 0.8 0.7 1.0 1.3
[1] 3pzh.a 0.7 0.8 0.8 0.8 0.5 0.2 0.4 0.7 0.6 0.5 0.6 0.7 0.8 0.6 0.4 1.4 0.3 0.9 0.8 0.7 0.8 0.6 0.3 0.7 0.4 0.7 0.4 0.6 0.2 0.5
0
0.6 0.4 0.4 0.5 0.5 0.9 1.1
[1] 4anm.a 0.5 0.5 0.6 0.6 0.6 0.6 0.7 0.8 0.6 0.7 0.3 0.5 0.6 0.4 0.3 1.2 0.5 0.7 0.6 0.6 0.6 0.4 0.5 0.4 0.4 0.3 0.4 0.4 0.5 0.7 0.6
0
0.4 0.4 0.3 0.7 0.8 1.2
[1] 4dgm.a 0.5 0.5 0.6 0.6 0.5 0.5 0.7 0.8 0.6 0.7 0.4 0.5 0.6 0.3 0.3 1.2 0.3 0.7 0.7 0.5 0.6 0.3 0.4 0.5 0.3 0.5 0.3 0.3 0.4 0.7 0.4 0.4
0
0.1 0.2 0.5 0.9 1.2
[1] 4dgn.a 0.5 0.5 0.6 0.6 0.6 0.4 0.6 0.8 0.6 0.7 0.4 0.5 0.6 0.3 0.3 1.2 0.3 0.8 0.7 0.5 0.6 0.4 0.3 0.5 0.3 0.4 0.3 0.3 0.3 0.7 0.4 0.4 0.1
0
0.2 0.5 0.9 1.2
[1] 4dgo.a 0.5 0.5 0.6 0.6 0.6 0.5 0.7 0.8 0.6 0.8 0.4 0.6 0.7 0.4 0.4 1.2 0.4 0.8 0.7 0.6 0.7 0.4 0.4 0.5 0.4 0.4 0.5 0.4 0.5 0.8 0.5 0.3 0.2 0.2
0
0.6 0.9 1.2
[1] 4rlk.a 0.8 0.8 0.8 0.8 0.7 0.5 0.7 0.8 0.7 0.7 0.7 0.7 0.9 0.6 0.5 1.4 0.5 0.9 0.9 0.7 0.8 0.6 0.5 0.7 0.5 0.7 0.4 0.6 0.5 0.7 0.5 0.7 0.5 0.5 0.6
0
1.1 1.2
[2] 1j91.b 1.0 1.0 0.9 0.9 1.0 0.9 1.0 0.9 1.1 1.0 0.9 0.9 1.1 0.9 0.9 1.4 1.0 1.2 1.1 1.1 1.1 0.9 0.9 0.9 0.9 0.8 1.0 0.9 0.9 1.0 0.9 0.8 0.9 0.9 0.9 1.1
0
1.1
[3] 3fl5.a 1.4 1.5 1.3 1.3 1.2 1.1 1.1 0.8 1.4 1.1 1.3 1.3 1.6 1.3 1.2 2.0 1.2 1.5 1.6 1.5 1.5 1.3 1.1 1.4 1.3 1.3 1.2 1.3 1.2 1.3 1.1 1.2 1.2 1.2 1.2 1.2 1.1
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1daw.a
1day.a
1ds5.a
1ds5.b
1jam.a
1lpu.a
1m2p.a
1m2q.a
1m2r.a
1om1.a
1zoe.a
1zog.a
1zoh.a
2oxd.a
2oxx.a
2oxy.a
2pvh.a
2pvj.a
2pvk.a
2pvl.a
2pvm.a
2pvn.a
2qc6.a
3be9.a
3kxg.a
3kxh.a
3kxm.a
3kxn.a
3pvg.a
3pwd.a
3pzh.a
4anm.a
4dgm.a
4dgn.a
4dgo.a
4rlk.a
1j91.b
3fl5.a
[1] 1daw.a
0
0.5 1.6 1.4 1.0 0.8 1.2 1.6 1.3 1.2 1.0 1.2 1.4 1.3 1.5 1.3 1.0 1.1 1.0 0.9 1.1 0.8 0.9 0.8 0.8 0.8 0.9 0.8 0.9 1.3 0.9 0.8 0.7 0.8 0.8 1.1 1.5 1.7
[1] 1day.a 0.5
0
1.6 1.4 1.1 1.0 1.3 1.7 1.2 1.3 1.1 1.2 1.4 1.3 1.5 1.4 1.1 1.1 1.0 0.9 1.2 0.8 1.0 1.0 0.9 0.9 1.0 0.9 0.9 1.2 1.0 1.0 0.8 0.9 0.9 1.2 1.6 1.9
[1] 1ds5.a 1.6 1.6
0
0.8 1.8 1.5 1.7 1.8 1.4 1.7 1.5 1.4 1.2 1.3 1.5 1.6 1.6 1.7 1.6 1.5 1.6 1.5 1.5 1.4 1.4 1.5 1.5 1.4 1.5 1.3 1.5 1.5 1.5 1.4 1.5 1.7 1.8 2.2
[1] 1ds5.b 1.4 1.4 0.8
0
1.7 1.4 1.6 1.7 1.4 1.6 1.4 1.2 1.2 1.2 1.4 1.5 1.5 1.6 1.6 1.4 1.6 1.4 1.4 1.3 1.2 1.3 1.3 1.2 1.4 1.4 1.4 1.4 1.4 1.3 1.3 1.6 1.8 2.1
[1] 1jam.a 1.0 1.1 1.8 1.7
0
0.9 1.2 1.6 1.4 1.1 1.1 1.4 1.7 1.6 1.6 1.6 1.0 1.3 1.3 1.1 1.3 1.0 1.0 1.1 1.0 1.0 1.0 1.0 0.9 1.3 0.9 1.1 0.9 1.0 1.0 1.1 1.6 1.7
[1] 1lpu.a 0.8 1.0 1.5 1.4 0.9
0
1.0 1.5 1.3 0.9 1.1 1.3 1.4 1.4 1.5 1.5 0.9 1.2 1.2 1.0 1.2 0.9 0.9 1.1 0.8 1.0 0.9 0.9 0.8 1.1 0.7 0.9 0.8 0.9 1.0 0.9 1.5 1.6
[1] 1m2p.a 1.2 1.3 1.7 1.6 1.2 1.0
0
1.4 1.3 0.5 1.1 1.4 1.4 1.4 1.6 1.8 0.7 1.3 1.3 1.1 1.4 1.1 1.0 1.2 0.9 1.1 0.9 1.1 0.9 1.0 0.8 1.1 1.1 1.0 1.1 1.0 1.7 1.5
[1] 1m2q.a 1.6 1.7 1.8 1.7 1.6 1.5 1.4
0
1.9 1.4 1.5 1.6 1.6 1.6 1.6 1.9 1.4 1.9 1.8 1.6 1.7 1.5 1.5 1.5 1.5 1.4 1.5 1.4 1.4 1.7 1.5 1.6 1.5 1.4 1.5 1.6 1.8 1.6
[1] 1m2r.a 1.3 1.2 1.4 1.4 1.4 1.3 1.3 1.9
0
1.2 1.3 1.2 1.4 1.2 1.5 1.7 1.2 1.4 1.3 1.2 1.5 1.2 1.1 1.4 1.1 1.3 1.1 1.2 1.2 0.8 1.2 1.3 1.2 1.1 1.2 1.4 1.8 2.1
[1] 1om1.a 1.2 1.3 1.7 1.6 1.1 0.9 0.5 1.4 1.2
0
1.1 1.4 1.4 1.4 1.6 1.8 0.6 1.3 1.3 1.0 1.4 1.0 0.9 1.2 0.9 1.1 0.9 1.0 0.8 1.0 0.8 1.0 1.0 0.9 1.0 1.1 1.7 1.6
[1] 1zoe.a 1.0 1.1 1.5 1.4 1.1 1.1 1.1 1.5 1.3 1.1
0
1.3 1.4 1.1 1.3 1.4 0.9 1.2 1.2 0.9 0.9 0.8 0.9 0.7 0.9 0.7 0.7 0.6 0.9 1.2 1.0 0.8 0.8 0.7 0.7 1.3 1.6 1.7
[1] 1zog.a 1.2 1.2 1.4 1.2 1.4 1.3 1.4 1.6 1.2 1.4 1.3
0
1.1 0.9 1.0 1.5 1.3 1.5 1.4 1.2 1.4 1.0 1.2 1.2 1.1 1.1 1.2 1.1 1.2 1.2 1.2 1.2 1.1 1.1 1.2 1.4 1.8 2.0
[1] 1zoh.a 1.4 1.4 1.2 1.2 1.7 1.4 1.4 1.6 1.4 1.4 1.4 1.1
0
1.1 1.3 1.6 1.3 1.4 1.3 1.2 1.4 1.3 1.4 1.3 1.3 1.3 1.3 1.2 1.4 1.3 1.4 1.4 1.4 1.3 1.4 1.5 1.9 2.1
[1] 2oxd.a 1.3 1.3 1.3 1.2 1.6 1.4 1.4 1.6 1.2 1.4 1.1 0.9 1.1
0
0.8 1.7 1.3 1.5 1.4 1.2 1.2 1.1 1.2 1.2 1.1 1.2 1.0 1.1 1.2 1.2 1.3 1.3 1.2 1.1 1.2 1.5 1.8 1.9
[1] 2oxx.a 1.5 1.5 1.5 1.4 1.6 1.5 1.6 1.6 1.5 1.6 1.3 1.0 1.3 0.8
0
1.8 1.5 1.7 1.6 1.5 1.4 1.4 1.1 1.5 1.4 1.4 1.3 1.3 1.4 1.4 1.5 1.5 1.4 1.4 1.4 1.6 1.9 1.9
[1] 2oxy.a 1.3 1.4 1.6 1.5 1.6 1.5 1.8 1.9 1.7 1.8 1.4 1.5 1.6 1.7 1.8
0
1.7 1.8 1.7 1.6 1.6 1.4 1.5 1.4 1.4 1.2 1.5 1.3 1.5 1.6 1.5 1.5 1.5 1.4 1.4 1.8 1.8 2.4
[1] 2pvh.a 1.0 1.1 1.6 1.5 1.0 0.9 0.7 1.4 1.2 0.6 0.9 1.3 1.3 1.3 1.5 1.7
0
1.1 1.1 0.8 1.2 0.8 0.9 1.0 0.7 0.9 0.7 0.8 0.8 1.1 0.8 0.9 0.7 0.7 0.8 0.9 1.7 1.5
[1] 2pvj.a 1.1 1.1 1.7 1.6 1.3 1.2 1.3 1.9 1.4 1.3 1.2 1.5 1.4 1.5 1.7 1.8 1.1
0
0.5 0.7 1.0 0.9 1.2 1.1 1.1 1.2 1.1 1.1 1.2 1.3 1.2 1.1 1.1 1.1 1.2 1.3 1.8 1.9
[1] 2pvk.a 1.0 1.0 1.6 1.6 1.3 1.2 1.3 1.8 1.3 1.3 1.2 1.4 1.3 1.4 1.6 1.7 1.1 0.5
0
0.7 0.9 0.9 1.2 1.0 1.0 1.1 1.0 1.0 1.1 1.3 1.1 1.1 1.0 1.0 1.1 1.2 1.7 1.9
[1] 2pvl.a 0.9 0.9 1.5 1.4 1.1 1.0 1.1 1.6 1.2 1.0 0.9 1.2 1.2 1.2 1.5 1.6 0.8 0.7 0.7
0
0.9 0.5 0.9 0.8 0.7 0.8 0.8 0.8 0.8 1.1 0.9 0.9 0.8 0.7 0.8 1.1 1.7 1.8
[1] 2pvm.a 1.1 1.2 1.6 1.6 1.3 1.2 1.4 1.7 1.5 1.4 0.9 1.4 1.4 1.2 1.4 1.6 1.2 1.0 0.9 0.9
0
0.9 1.2 0.9 1.1 1.1 0.9 1.0 1.1 1.3 1.2 1.1 1.1 1.1 1.1 1.3 1.7 1.7
[1] 2pvn.a 0.8 0.8 1.5 1.4 1.0 0.9 1.1 1.5 1.2 1.0 0.8 1.0 1.3 1.1 1.4 1.4 0.8 0.9 0.9 0.5 0.9
0
0.9 0.6 0.6 0.6 0.7 0.7 0.7 1.1 0.8 0.7 0.6 0.6 0.7 1.1 1.6 1.7
[1] 2qc6.a 0.9 1.0 1.5 1.4 1.0 0.9 1.0 1.5 1.1 0.9 0.9 1.2 1.4 1.2 1.1 1.5 0.9 1.2 1.2 0.9 1.2 0.9
0
1.1 0.7 0.8 0.8 0.8 0.8 1.0 0.8 0.9 0.8 0.8 0.9 1.1 1.6 1.6
[1] 3be9.a 0.8 1.0 1.4 1.3 1.1 1.1 1.2 1.5 1.4 1.2 0.7 1.2 1.3 1.2 1.5 1.4 1.0 1.1 1.0 0.8 0.9 0.6 1.1
0
0.8 0.8 0.8 0.7 0.9 1.3 1.0 0.8 0.8 0.8 0.8 1.2 1.6 1.7
[1] 3kxg.a 0.8 0.9 1.4 1.2 1.0 0.8 0.9 1.5 1.1 0.9 0.9 1.1 1.3 1.1 1.4 1.4 0.7 1.1 1.0 0.7 1.1 0.6 0.7 0.8
0
0.6 0.6 0.5 0.6 1.0 0.6 0.8 0.6 0.5 0.7 0.9 1.5 1.7
[1] 3kxh.a 0.8 0.9 1.5 1.3 1.0 1.0 1.1 1.4 1.3 1.1 0.7 1.1 1.3 1.2 1.4 1.2 0.9 1.2 1.1 0.8 1.1 0.6 0.8 0.8 0.6
0
0.7 0.5 0.7 1.1 0.8 0.7 0.6 0.6 0.6 1.1 1.5 1.8
[1] 3kxm.a 0.9 1.0 1.5 1.3 1.0 0.9 0.9 1.5 1.1 0.9 0.7 1.2 1.3 1.0 1.3 1.5 0.7 1.1 1.0 0.8 0.9 0.7 0.8 0.8 0.6 0.7
0
0.5 0.7 1.0 0.7 0.8 0.6 0.5 0.6 1.0 1.6 1.6
[1] 3kxn.a 0.8 0.9 1.4 1.2 1.0 0.9 1.1 1.4 1.2 1.0 0.6 1.1 1.2 1.1 1.3 1.3 0.8 1.1 1.0 0.8 1.0 0.7 0.8 0.7 0.5 0.5 0.5
0
0.7 1.0 0.8 0.7 0.6 0.5 0.6 1.1 1.6 1.8
[1] 3pvg.a 0.9 0.9 1.5 1.4 0.9 0.8 0.9 1.4 1.2 0.8 0.9 1.2 1.4 1.2 1.4 1.5 0.8 1.2 1.1 0.8 1.1 0.7 0.8 0.9 0.6 0.7 0.7 0.7
0
1.0 0.5 0.9 0.6 0.6 0.8 0.9 1.6 1.7
[1] 3pwd.a 1.3 1.2 1.3 1.4 1.3 1.1 1.0 1.7 0.8 1.0 1.2 1.2 1.3 1.2 1.4 1.6 1.1 1.3 1.3 1.1 1.3 1.1 1.0 1.3 1.0 1.1 1.0 1.0 1.0
0
0.9 1.2 1.1 1.1 1.2 1.3 1.6 1.8
[1] 3pzh.a 0.9 1.0 1.5 1.4 0.9 0.7 0.8 1.5 1.2 0.8 1.0 1.2 1.4 1.3 1.5 1.5 0.8 1.2 1.1 0.9 1.2 0.8 0.8 1.0 0.6 0.8 0.7 0.8 0.5 0.9
0
0.9 0.7 0.7 0.8 0.8 1.5 1.6
[1] 4anm.a 0.8 1.0 1.5 1.4 1.1 0.9 1.1 1.6 1.3 1.0 0.8 1.2 1.4 1.3 1.5 1.5 0.9 1.1 1.1 0.9 1.1 0.7 0.9 0.8 0.8 0.7 0.8 0.7 0.9 1.2 0.9
0
0.8 0.8 0.8 1.1 1.5 1.7
[1] 4dgm.a 0.7 0.8 1.5 1.4 0.9 0.8 1.1 1.5 1.2 1.0 0.8 1.1 1.4 1.2 1.4 1.5 0.7 1.1 1.0 0.8 1.1 0.6 0.8 0.8 0.6 0.6 0.6 0.6 0.6 1.1 0.7 0.8
0
0.5 0.5 1.0 1.6 1.7
[1] 4dgn.a 0.8 0.9 1.4 1.3 1.0 0.9 1.0 1.4 1.1 0.9 0.7 1.1 1.3 1.1 1.4 1.4 0.7 1.1 1.0 0.7 1.1 0.6 0.8 0.8 0.5 0.6 0.5 0.5 0.6 1.1 0.7 0.8 0.5
0
0.4 1.0 1.6 1.7
[1] 4dgo.a 0.8 0.9 1.5 1.3 1.0 1.0 1.1 1.5 1.2 1.0 0.7 1.2 1.4 1.2 1.4 1.4 0.8 1.2 1.1 0.8 1.1 0.7 0.9 0.8 0.7 0.6 0.6 0.6 0.8 1.2 0.8 0.8 0.5 0.4
0
1.1 1.6 1.7
[1] 4rlk.a 1.1 1.2 1.7 1.6 1.1 0.9 1.0 1.6 1.4 1.1 1.3 1.4 1.5 1.5 1.6 1.8 0.9 1.3 1.2 1.1 1.3 1.1 1.1 1.2 0.9 1.1 1.0 1.1 0.9 1.3 0.8 1.1 1.0 1.0 1.1
0
1.7 1.6
[2] 1j91.b 1.5 1.6 1.8 1.8 1.6 1.5 1.7 1.8 1.8 1.7 1.6 1.8 1.9 1.8 1.9 1.8 1.7 1.8 1.7 1.7 1.7 1.6 1.6 1.6 1.5 1.5 1.6 1.6 1.6 1.6 1.5 1.5 1.6 1.6 1.6 1.7
0
1.6
[3] 3fl5.a 1.7 1.9 2.2 2.1 1.7 1.6 1.5 1.6 2.1 1.6 1.7 2.0 2.1 1.9 1.9 2.4 1.5 1.9 1.9 1.8 1.7 1.7 1.6 1.7 1.7 1.8 1.6 1.8 1.7 1.8 1.6 1.7 1.7 1.7 1.7 1.6 1.6
0
[Binding site full-atom RMSD matrix]







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[ENTRY 2D visualization]

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