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CP51_YEAST_1_530

Lanosterol 14-alpha demethylase [Cytochrome P450 family]

Composition of the binding site

Protein chains monomer
A1 (CP51_YEAST):69, 70, 72:74, 96, 126, 129, 130, 134, 139, 140, 147, 150, 151, 154, 236, 238, 239, 241:243, 307, 310, 311, 313:315, 318, 380:384, 506:51069, 70, 72:74, 96, 126, 129, 130, 134, 139, 140, 147, 150, 151, 154, 236, 238, 239, 241:243, 307, 310, 311, 313:315, 318, 380:384, 506:510
Cofactors (cF):hem
Metals (Me):Fe

Full PDB list

4lxj, 4wmz, 4zdy, 4zdz, 4ze0, 4ze1, 4ze2, 4ze3, 5eab, 5eac, 5ead, 5eae, 5eaf, 5eag, 5eah, 5eqb, 5ese, 5esf, 5esg, 5esh, 5esi, 5esj, 5esk, 5esl, 5esm, 5esn, 5hs1, 5ul0 (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 cF Me
A
6
9
V
7
0
Y
7
2
G
7
3
M
7
4
L
9
6
Y
1
2
6
L
1
2
9
T
1
3
0
F
1
3
4
I
1
3
9
Y
1
4
0
L
1
4
7
Q
1
5
0
K
1
5
1
V
1
5
4
F
2
3
6
P
2
3
8
I
2
3
9
F
2
4
1
V
2
4
2
L
3
0
7
G
3
1
0
V
3
1
1
M
3
1
3
G
3
1
4
G
3
1
5
T
3
1
8
L
3
8
0
H
3
8
1
S
3
8
2
L
3
8
3
F
3
8
4
F
5
0
6
T
5
0
7
S
5
0
8
M
5
0
9
[1]4lxj.a lan31 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4wmz.a tpf22 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4zdy.a 1yn49 . . . . . . . . . . . F . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4zdz.a tpf22 . . . . . . . . . . . F . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4ze0.a vor25 . . . . . . . . . . . F . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4ze1.a x2n51 . . . . . . . . . . . F . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4ze2.a 1yn49 . . . . . . . . . . . H . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4ze3.a tpf22 . . . . . . . . . . . H . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eab.a tbx21 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eac.a tbq21 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5ead.a 5l920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eae.a 5l820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eaf.a fqc25 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eag.a 5lu23 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eah.a 5lw,5ly,5lz81 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eqb.a 1yn49 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5ese.a tpf22 . . . R . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esf.a tpf22 . . . E . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esg.a 1yn49 . . . E . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esh.a 1yn49 . . . W . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esi.a none . . . W . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esn.a none . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5hs1.a vor25 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5ul0.a vt137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 cF Me
A
6
9
V
7
0
Y
7
2
G
7
3
M
7
4
L
9
6
Y
1
2
6
L
1
2
9
T
1
3
0
F
1
3
4
I
1
3
9
Y
1
4
0
L
1
4
7
Q
1
5
0
K
1
5
1
V
1
5
4
F
2
3
6
P
2
3
8
I
2
3
9
F
2
4
1
V
2
4
2
F
2
4
3
L
3
0
7
G
3
1
0
V
3
1
1
M
3
1
3
G
3
1
4
G
3
1
5
T
3
1
8
L
3
8
0
H
3
8
1
S
3
8
2
L
3
8
3
F
3
8
4
F
5
0
6
T
5
0
7
S
5
0
8
M
5
0
9
V
5
1
0
[1]4lxj.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4wmz.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . hem Fe
[1]4zdy.a . . . . . . . . . . . F . . . . . . * . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4zdz.a . . . . . . . . . . . F . . . . . . . . . . . . . . . . . . . . . . . . . * . hem Fe
[1]4ze0.a . . . . . . . . . . . F . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4ze1.a . . . . . . . . . . . F . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4ze2.a . . . . . . . . . . . H . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]4ze3.a . . . . . . . . . . . H . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eab.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eac.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5ead.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eae.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eaf.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . hem Fe
[1]5eag.a . . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . . . . . . hem Fe
[1]5eah.a . . . . . . . . . . . . . . . . . . * . . . . . . . . . . . . . . . . . . * . hem Fe
[1]5eqb.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5ese.a . . . R . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esf.a . . . E . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esg.a . . . E . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esh.a . . . W . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5esi.a . . . W . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . hem Fe
[1]5esn.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe
[1]5hs1.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . * . hem Fe
[1]5ul0.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . hem Fe

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4lxj.a:lan
4wmz.a:tpf
4zdy.a:1yn
4zdz.a:tpf
4ze0.a:vor
4ze1.a:x2n
4ze2.a:1yn
4ze3.a:tpf
5eab.a:tbx
5eac.a:tbq
5ead.a:5l9
5eae.a:5l8
5eaf.a:fqc
5eag.a:5lu
5eah.a:5lw,5ly,5lz
5eqb.a:1yn
5ese.a:tpf
5esf.a:tpf
5esg.a:1yn
5esh.a:1yn
5esi.a is apo
5esn.a is apo
5hs1.a:vor
5ul0.a:vt1
[1] 4lxj.a
0
0.5 0.6 0.5 0.3 0.3 0.6 0.5 0.4 0.1 0.4 0.4 0.1 0.2 0.6 0.7 0.3 0.3 1.0 1.0 - - 0.5 0.6
[1] 4wmz.a 0.9
0
0.4 0 0 0.6 0.3 0.2 0.2 0.4 0.1 0.1 0.5 0.7 0.7 0.6 0 0 0.4 0.9 - - 0.1 0.6
[1] 4zdy.a 0.7 0
0
0 0 0 0 0.2 0.1 0.1 0.2 0.1 0.3 0.5 0.2 0 0 0 0.9 0.4 - - 0.1 0.2
[1] 4zdz.a 1.0 0 0.4
0
0.1 0.7 0.3 0.2 0.1 0.4 0.1 0.2 0.4 0.6 0.5 0.3 0 0 0.8 0.7 - - 0.1 0.4
[1] 4ze0.a 0.4 0 0.2 0
0
0.2 0.1 0.2 0.2 0 0.1 0 0.2 0.6 0.5 0.2 0 0 0.1 0.3 - - 0 0.3
[1] 4ze1.a 0.5 0 0.1 0 0
0
0.1 0.1 0.2 0 0.1 0.1 0.3 0.5 0.4 0.3 0 0 0.2 0.6 - - 0.1 0
[1] 4ze2.a 0.5 0 0 0 0 0
0
0.1 0.2 0 0.1 0 0.2 0.8 0.3 0.1 0 0 0 0.3 - - 0.1 0
[1] 4ze3.a 0.9 0 0.2 0 0.1 0.4 0.1
0
0.2 0.1 0.1 0.1 0.6 1.0 0.4 0.1 0 0 0.1 0.7 - - 0 0.2
[1] 5eab.a 0.5 0 0.2 0 0 0.2 0.2 0.1
0
0.1 0.1 0.1 0 0.3 0.1 0.1 0 0 0.4 0.2 - - 0.1 0.3
[1] 5eac.a 0.2 0 0.2 0 0 0.3 0.2 0.2 0.2
0
0.1 0.1 0 0.3 0.3 0.1 0 0 0.3 0.1 - - 0.1 0.2
[1] 5ead.a 0.4 0 0.2 0 0 0.4 0.1 0.1 0.2 0
0
0.1 0.2 0.6 0.5 0.2 0 0 0.3 0.5 - - 0 0.4
[1] 5eae.a 0.9 0 0.5 0 0 0.7 0.4 0.2 0.2 0.1 0.1
0
0.2 0.4 0.3 0.3 0 0 0.3 0.8 - - 0 0.6
[1] 5eaf.a 0.7 0.1 0.4 0 0 0.4 0.5 0.3 0.1 0.5 0.1 0
0
0.3 0.1 0.4 0 0 0.5 0.6 - - 0 1.0
[1] 5eag.a 0.5 0.2 0.2 0.1 0.1 0.4 0.6 0.2 0.3 0.1 0.3 0.1 0.1
0
0.6 0.4 0 0.2 2.8 2.3 - - 0.2 0.9
[1] 5eah.a 2.4 0 2.9 0 0 2.8 2.9 0.1 0 0 0.1 0 0 0.3
0
2.7 0 0 3.3 1.8 - - 0.1 2.3
[1] 5eqb.a 0.3 0.2 0.1 0.1 0.1 0.1 0.2 0.3 0.1 0 0.2 0.1 0.2 0.4 0.3
0.1
0 0.1 0.5 1.0 - - 0.2 0.3
[1] 5ese.a 0.5 0 2.3 0 0 3.6 1.9 0.1 0.3 0.1 0.1 0.2 0.6 0.8 0.7 2.6
0
0 0.1 0.4 - - 0 0.3
[1] 5esf.a 0.5 0 3.0 0 0 2.8 2.7 0.1 0.3 0.1 0.1 0.1 0.5 0.7 0.6 2.8 0
0
0 0.7 - - 0 0.3
[1] 5esg.a 0.4 0 2.4 0 0 2.8 2.7 0.1 0.2 0 0.1 0 0.3 0.4 0.3 2.3 0 0
0
1.6 - - 0.1 0.1
[1] 5esh.a 0.2 0 4.0 0 0 4.7 3.8 0.1 0.2 0 0.1 0 0.1 0.3 0.2 3.8 0 0 0.2
0
- - 0.1 0.2
[1] 5esi.a 2.9 0.5 6.3 0.5 0.5 7.4 6.0 0.5 0.5 0.3 0.6 0.3 0.2 0.2 1.0 6.6 0.3 0.5 3.4 3.5
-
- 0.5 2.6
[1] 5esn.a 0.4 0.5 0.5 0.5 0.3 0.3 0.4 0.5 0.3 0.1 0.4 0.3 0.2 0.3 0.6 0.5 0.3 0.3 0.7 1.1 -
-
0.5 0.6
[1] 5hs1.a 2.6 0 2.1 0 0 2.3 2.2 0.2 0.1 0.8 0.1 0 0 0.4 0.4 2.2 0 0 1.7 1.4 - -
0
2.2
[1] 5ul0.a 0.5 0 0.3 0 0 0.2 0.2 0 0.2 0 0.2 0.1 0.3 0.5 0.3 0.3 0 0 0.1 0.3 - - 0.1
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4lxj.a
4wmz.a
4zdy.a
4zdz.a
4ze0.a
4ze1.a
4ze2.a
4ze3.a
5eab.a
5eac.a
5ead.a
5eae.a
5eaf.a
5eag.a
5eah.a
5eqb.a
5ese.a
5esf.a
5esg.a
5esh.a
5esi.a
5esn.a
5hs1.a
5ul0.a
[1] 4lxj.a
0
.08 .07 .09 .06 .05 .06 .07 .05 .05 .07 .07 .06 .08 .15 .03 .16 .14 .14 .18 .19 .02 .12 .06
[1] 4wmz.a .08
0
.06 .02 .02 .07 .05 .03 .05 .05 .04 .04 .04 .11 .11 .06 .11 .09 .13 .17 .23 .06 .08 .05
[1] 4zdy.a .07 .06
0
.05 .04 .06 .05 .06 .05 .05 .04 .07 .05 .09 .11 .05 .14 .13 .14 .18 .24 .06 .11 .06
[1] 4zdz.a .09 .02 .05
0
.04 .07 .06 .04 .06 .05 .04 .05 .05 .11 .10 .07 .13 .11 .14 .18 .23 .08 .09 .06
[1] 4ze0.a .06 .02 .04 .04
0
.05 .04 .04 .04 .03 .02 .05 .05 .09 .12 .04 .11 .09 .12 .16 .23 .05 .08 .04
[1] 4ze1.a .05 .07 .06 .07 .05
0
.02 .05 .05 .04 .04 .05 .06 .09 .13 .04 .14 .12 .11 .15 .23 .04 .11 .02
[1] 4ze2.a .06 .05 .05 .06 .04 .02
0
.04 .04 .04 .03 .05 .05 .11 .13 .04 .12 .11 .11 .15 .24 .05 .11 .02
[1] 4ze3.a .07 .03 .06 .04 .04 .05 .04
0
.05 .05 .03 .05 .06 .11 .13 .05 .11 .10 .12 .17 .24 .06 .10 .04
[1] 5eab.a .05 .05 .05 .06 .04 .05 .04 .05
0
.02 .04 .05 .04 .10 .11 .04 .14 .12 .11 .15 .23 .05 .08 .05
[1] 5eac.a .05 .05 .05 .05 .03 .04 .04 .05 .02
0
.03 .04 .04 .10 .11 .04 .12 .11 .10 .14 .22 .04 .08 .03
[1] 5ead.a .07 .04 .04 .04 .02 .04 .03 .03 .04 .03
0
.04 .04 .10 .11 .05 .11 .10 .11 .15 .23 .05 .09 .03
[1] 5eae.a .07 .04 .07 .05 .05 .05 .05 .05 .05 .04 .04
0
.04 .11 .11 .06 .14 .12 .13 .17 .21 .05 .08 .05
[1] 5eaf.a .06 .04 .05 .05 .05 .06 .05 .06 .04 .04 .04 .04
0
.11 .09 .05 .15 .13 .12 .16 .21 .05 .07 .05
[1] 5eag.a .08 .11 .09 .11 .09 .09 .11 .11 .10 .10 .10 .11 .11
0
.17 .08 .19 .18 .19 .23 .26 .08 .15 .11
[1] 5eah.a .15 .11 .11 .10 .12 .13 .13 .13 .11 .11 .11 .11 .09 .17
0
.13 .22 .20 .18 .22 .18 .14 .07 .12
[1] 5eqb.a .03 .06 .05 .07 .04 .04 .04 .05 .04 .04 .05 .06 .05 .08 .13
0
.14 .13 .14 .18 .21 .02 .12 .06
[1] 5ese.a .16 .11 .14 .13 .11 .14 .12 .11 .14 .12 .11 .14 .15 .19 .22 .14
0
.02 .06 .07 .16 .14 .17 .12
[1] 5esf.a .14 .09 .13 .11 .09 .12 .11 .10 .12 .11 .10 .12 .13 .18 .20 .13 .02
0
.05 .09 .17 .12 .16 .11
[1] 5esg.a .14 .13 .14 .14 .12 .11 .11 .12 .11 .10 .11 .13 .12 .19 .18 .14 .06 .05
0
.07 .18 .13 .16 .09
[1] 5esh.a .18 .17 .18 .18 .16 .15 .15 .17 .15 .14 .15 .17 .16 .23 .22 .18 .07 .09 .07
0
.14 .17 .20 .14
[1] 5esi.a .19 .23 .24 .23 .23 .23 .24 .24 .23 .22 .23 .21 .21 .26 .18 .21 .16 .17 .18 .14
0
.20 .19 .23
[1] 5esn.a .02 .06 .06 .08 .05 .04 .05 .06 .05 .04 .05 .05 .05 .08 .14 .02 .14 .12 .13 .17 .20
0
.11 .05
[1] 5hs1.a .12 .08 .11 .09 .08 .11 .11 .10 .08 .08 .09 .08 .07 .15 .07 .12 .17 .16 .16 .20 .19 .11
0
.09
[1] 5ul0.a .06 .05 .06 .06 .04 .02 .02 .04 .05 .03 .03 .05 .05 .11 .12 .06 .12 .11 .09 .14 .23 .05 .09
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.8 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4lxj.a
4wmz.a
4zdy.a
4zdz.a
4ze0.a
4ze1.a
4ze2.a
4ze3.a
5eab.a
5eac.a
5ead.a
5eae.a
5eaf.a
5eag.a
5eah.a
5eqb.a
5ese.a
5esf.a
5esg.a
5esh.a
5esi.a
5esn.a
5hs1.a
5ul0.a
[1] 4lxj.a
0
0.6 0.6 0.5 0.5 0.6 0.7 0.7 0.4 0.5 0.6 0.5 0.6 0.5 0.7 0.4 0.6 0.6 0.6 0.7 0.5 0.2 0.8 0.8
[1] 4wmz.a 0.6
0
0.6 0.3 0.3 0.4 0.4 0.2 0.5 0.4 0.2 0.3 0.5 0.7 0.7 0.6 0.2 0.2 0.4 0.5 0.8 0.5 0.6 0.4
[1] 4zdy.a 0.6 0.6
0
0.5 0.5 0.4 0.5 0.6 0.5 0.6 0.5 0.5 0.6 0.7 0.8 0.3 0.6 0.6 0.5 0.7 0.8 0.5 0.8 0.6
[1] 4zdz.a 0.5 0.3 0.5
0
0.2 0.5 0.5 0.4 0.4 0.4 0.3 0.4 0.5 0.5 0.6 0.5 0.4 0.3 0.5 0.6 0.7 0.4 0.6 0.5
[1] 4ze0.a 0.5 0.3 0.5 0.2
0
0.4 0.5 0.4 0.4 0.3 0.3 0.4 0.4 0.5 0.6 0.5 0.4 0.3 0.5 0.5 0.7 0.4 0.6 0.5
[1] 4ze1.a 0.6 0.4 0.4 0.5 0.4
0
0.2 0.4 0.5 0.5 0.3 0.4 0.5 0.7 0.7 0.5 0.3 0.4 0.2 0.5 0.8 0.6 0.7 0.4
[1] 4ze2.a 0.7 0.4 0.5 0.5 0.5 0.2
0
0.3 0.5 0.6 0.3 0.4 0.5 0.8 0.7 0.6 0.3 0.4 0.2 0.5 0.8 0.6 0.7 0.3
[1] 4ze3.a 0.7 0.2 0.6 0.4 0.4 0.4 0.3
0
0.6 0.5 0.3 0.4 0.5 0.8 0.7 0.7 0.2 0.2 0.4 0.4 0.9 0.6 0.6 0.3
[1] 5eab.a 0.4 0.5 0.5 0.4 0.4 0.5 0.5 0.6
0
0.5 0.4 0.4 0.4 0.5 0.6 0.4 0.5 0.5 0.5 0.6 0.6 0.3 0.7 0.7
[1] 5eac.a 0.5 0.4 0.6 0.4 0.3 0.5 0.6 0.5 0.5
0
0.4 0.4 0.5 0.5 0.7 0.6 0.4 0.4 0.6 0.6 0.7 0.4 0.7 0.6
[1] 5ead.a 0.6 0.2 0.5 0.3 0.3 0.3 0.3 0.3 0.4 0.4
0
0.3 0.4 0.6 0.6 0.5 0.2 0.2 0.3 0.4 0.7 0.5 0.6 0.4
[1] 5eae.a 0.5 0.3 0.5 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.3
0
0.3 0.6 0.6 0.5 0.4 0.3 0.5 0.6 0.7 0.4 0.5 0.5
[1] 5eaf.a 0.6 0.5 0.6 0.5 0.4 0.5 0.5 0.5 0.4 0.5 0.4 0.3
0
0.7 0.6 0.5 0.5 0.4 0.6 0.6 0.7 0.4 0.6 0.6
[1] 5eag.a 0.5 0.7 0.7 0.5 0.5 0.7 0.8 0.8 0.5 0.5 0.6 0.6 0.7
0
0.7 0.6 0.7 0.7 0.7 0.8 0.7 0.4 0.9 0.9
[1] 5eah.a 0.7 0.7 0.8 0.6 0.6 0.7 0.7 0.7 0.6 0.7 0.6 0.6 0.6 0.7
0
0.7 0.7 0.7 0.7 0.8 0.5 0.6 0.4 0.8
[1] 5eqb.a 0.4 0.6 0.3 0.5 0.5 0.5 0.6 0.7 0.4 0.6 0.5 0.5 0.5 0.6 0.7
0
0.6 0.6 0.6 0.7 0.6 0.3 0.8 0.7
[1] 5ese.a 0.6 0.2 0.6 0.4 0.4 0.3 0.3 0.2 0.5 0.4 0.2 0.4 0.5 0.7 0.7 0.6
0
0.2 0.3 0.4 0.8 0.6 0.6 0.3
[1] 5esf.a 0.6 0.2 0.6 0.3 0.3 0.4 0.4 0.2 0.5 0.4 0.2 0.3 0.4 0.7 0.7 0.6 0.2
0
0.4 0.4 0.8 0.5 0.6 0.4
[1] 5esg.a 0.6 0.4 0.5 0.5 0.5 0.2 0.2 0.4 0.5 0.6 0.3 0.5 0.6 0.7 0.7 0.6 0.3 0.4
0
0.4 0.8 0.6 0.7 0.4
[1] 5esh.a 0.7 0.5 0.7 0.6 0.5 0.5 0.5 0.4 0.6 0.6 0.4 0.6 0.6 0.8 0.8 0.7 0.4 0.4 0.4
0
0.9 0.7 0.7 0.5
[1] 5esi.a 0.5 0.8 0.8 0.7 0.7 0.8 0.8 0.9 0.6 0.7 0.7 0.7 0.7 0.7 0.5 0.6 0.8 0.8 0.8 0.9
0
0.5 0.7 1.0
[1] 5esn.a 0.2 0.5 0.5 0.4 0.4 0.6 0.6 0.6 0.3 0.4 0.5 0.4 0.4 0.4 0.6 0.3 0.6 0.5 0.6 0.7 0.5
0
0.7 0.7
[1] 5hs1.a 0.8 0.6 0.8 0.6 0.6 0.7 0.7 0.6 0.7 0.7 0.6 0.5 0.6 0.9 0.4 0.8 0.6 0.6 0.7 0.7 0.7 0.7
0
0.7
[1] 5ul0.a 0.8 0.4 0.6 0.5 0.5 0.4 0.3 0.3 0.7 0.6 0.4 0.5 0.6 0.9 0.8 0.7 0.3 0.4 0.4 0.5 1.0 0.7 0.7
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4lxj.a
4wmz.a
4zdy.a
4zdz.a
4ze0.a
4ze1.a
4ze2.a
4ze3.a
5eab.a
5eac.a
5ead.a
5eae.a
5eaf.a
5eag.a
5eah.a
5eqb.a
5ese.a
5esf.a
5esg.a
5esh.a
5esi.a
5esn.a
5hs1.a
5ul0.a
[1] 4lxj.a
0
0.9 0.7 0.7 0.6 0.8 0.8 0.9 0.6 0.8 0.7 0.7 0.7 0.8 1.1 0.5 0.7 0.8 1.0 1.0 0.9 0.5 1.1 0.9
[1] 4wmz.a 0.9
0
0.8 0.6 0.6 0.7 0.7 0.4 0.8 0.6 0.6 0.6 0.8 0.9 1.1 0.9 0.5 0.5 0.9 0.9 1.1 0.8 0.8 0.6
[1] 4zdy.a 0.7 0.8
0
0.7 0.7 0.7 0.8 0.9 0.8 0.8 0.8 0.8 0.9 1.0 1.2 0.5 0.8 0.8 1.0 1.1 1.1 0.6 1.1 0.8
[1] 4zdz.a 0.7 0.6 0.7
0
0.5 0.7 0.8 0.7 0.7 0.7 0.6 0.6 0.7 0.9 1.0 0.7 0.6 0.5 0.9 0.9 1.0 0.6 0.9 0.7
[1] 4ze0.a 0.6 0.6 0.7 0.5
0
0.7 0.7 0.7 0.6 0.7 0.6 0.6 0.6 0.9 1.0 0.6 0.5 0.5 0.9 0.9 0.9 0.6 0.9 0.7
[1] 4ze1.a 0.8 0.7 0.7 0.7 0.7
0
0.6 0.7 0.8 0.8 0.6 0.7 0.8 1.0 1.1 0.7 0.5 0.6 0.7 0.9 1.2 0.8 1.0 0.5
[1] 4ze2.a 0.8 0.7 0.8 0.8 0.7 0.6
0
0.6 0.8 0.8 0.7 0.6 0.8 1.1 1.1 0.8 0.6 0.6 0.8 0.9 1.2 0.8 1.0 0.6
[1] 4ze3.a 0.9 0.4 0.9 0.7 0.7 0.7 0.6
0
0.9 0.7 0.6 0.7 0.8 1.0 1.1 0.9 0.5 0.5 0.8 0.9 1.2 0.8 0.9 0.6
[1] 5eab.a 0.6 0.8 0.8 0.7 0.6 0.8 0.8 0.9
0
0.8 0.7 0.7 0.7 0.9 1.0 0.6 0.7 0.7 0.8 0.9 0.9 0.6 1.0 0.9
[1] 5eac.a 0.8 0.6 0.8 0.7 0.7 0.8 0.8 0.7 0.8
0
0.6 0.7 0.8 1.0 1.1 0.8 0.7 0.6 1.0 1.0 1.1 0.7 0.9 0.8
[1] 5ead.a 0.7 0.6 0.8 0.6 0.6 0.6 0.7 0.6 0.7 0.6
0
0.5 0.7 0.9 1.0 0.7 0.5 0.4 0.8 0.8 1.0 0.7 0.8 0.6
[1] 5eae.a 0.7 0.6 0.8 0.6 0.6 0.7 0.6 0.7 0.7 0.7 0.5
0
0.6 0.9 0.9 0.7 0.5 0.5 0.8 0.9 0.9 0.7 0.7 0.7
[1] 5eaf.a 0.7 0.8 0.9 0.7 0.6 0.8 0.8 0.8 0.7 0.8 0.7 0.6
0
1.0 0.9 0.8 0.6 0.6 0.9 1.0 0.9 0.7 0.8 0.8
[1] 5eag.a 0.8 0.9 1.0 0.9 0.9 1.0 1.1 1.0 0.9 1.0 0.9 0.9 1.0
0
1.1 0.9 1.0 0.9 1.0 1.0 1.1 0.8 1.2 1.1
[1] 5eah.a 1.1 1.1 1.2 1.0 1.0 1.1 1.1 1.1 1.0 1.1 1.0 0.9 0.9 1.1
0
1.1 1.0 1.0 1.1 1.1 0.8 1.1 0.7 1.2
[1] 5eqb.a 0.5 0.9 0.5 0.7 0.6 0.7 0.8 0.9 0.6 0.8 0.7 0.7 0.8 0.9 1.1
0
0.7 0.8 1.0 1.1 0.9 0.5 1.1 0.9
[1] 5ese.a 0.7 0.5 0.8 0.6 0.5 0.5 0.6 0.5 0.7 0.7 0.5 0.5 0.6 1.0 1.0 0.7
0
0.3 0.8 0.8 1.1 0.7 0.8 0.5
[1] 5esf.a 0.8 0.5 0.8 0.5 0.5 0.6 0.6 0.5 0.7 0.6 0.4 0.5 0.6 0.9 1.0 0.8 0.3
0
0.9 0.8 1.1 0.7 0.8 0.5
[1] 5esg.a 1.0 0.9 1.0 0.9 0.9 0.7 0.8 0.8 0.8 1.0 0.8 0.8 0.9 1.0 1.1 1.0 0.8 0.9
0
0.6 1.3 1.0 1.1 0.7
[1] 5esh.a 1.0 0.9 1.1 0.9 0.9 0.9 0.9 0.9 0.9 1.0 0.8 0.9 1.0 1.0 1.1 1.1 0.8 0.8 0.6
0
1.3 1.0 1.1 0.8
[1] 5esi.a 0.9 1.1 1.1 1.0 0.9 1.2 1.2 1.2 0.9 1.1 1.0 0.9 0.9 1.1 0.8 0.9 1.1 1.1 1.3 1.3
0
0.8 0.9 1.3
[1] 5esn.a 0.5 0.8 0.6 0.6 0.6 0.8 0.8 0.8 0.6 0.7 0.7 0.7 0.7 0.8 1.1 0.5 0.7 0.7 1.0 1.0 0.8
0
1.0 0.9
[1] 5hs1.a 1.1 0.8 1.1 0.9 0.9 1.0 1.0 0.9 1.0 0.9 0.8 0.7 0.8 1.2 0.7 1.1 0.8 0.8 1.1 1.1 0.9 1.0
0
0.9
[1] 5ul0.a 0.9 0.6 0.8 0.7 0.7 0.5 0.6 0.6 0.9 0.8 0.6 0.7 0.8 1.1 1.2 0.9 0.5 0.5 0.7 0.8 1.3 0.9 0.9
0
[Binding site full-atom RMSD matrix]







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[ENTRY 2D visualization]

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