If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

COAD_ECOLI_1_159

Phosphopantetheine adenylyltransferase [Bacterial CoaD family]

Composition of the binding site

Protein chains monomer
A1 (COAD_ECOLI):7:11, 17, 18, 21, 37, 42, 70:74, 88, 89, 91, 94, 95, 98, 99, 102, 105, 106, 120, 124, 127:1307:11, 17, 18, 21, 37, 42, 70:74, 88, 89, 91, 94, 95, 98, 99, 102, 105, 106, 120, 124, 127:130

Full PDB list

1b6t, 1gn8, 1h1t, 1qjc, 5jbn (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
Y
7
P
8
G
9
T
1
0
F
1
1
G
1
7
H
1
8
I
2
1
A
3
7
K
4
2
F
7
0
D
7
2
L
7
3
M
7
4
R
8
8
G
8
9
R
9
1
A
9
4
D
9
5
Y
9
8
E
9
9
L
1
0
2
M
1
0
5
N
1
0
6
P
1
2
0
W
1
2
4
I
1
2
7
S
1
2
8
S
1
2
9
S
1
3
0
[1]1b6t.a none . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1b6t.b cod44 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1gn8.a atp31 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1h1t.a coa48 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1qjc.b pns22 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
Y
7
P
8
G
9
T
1
0
F
1
1
G
1
7
H
1
8
I
2
1
A
3
7
K
4
2
F
7
0
S
7
1
D
7
2
L
7
3
M
7
4
R
8
8
G
8
9
R
9
1
A
9
4
D
9
5
Y
9
8
E
9
9
L
1
0
2
M
1
0
5
N
1
0
6
P
1
2
0
W
1
2
4
I
1
2
7
S
1
2
8
S
1
2
9
S
1
3
0
[1]1b6t.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1b6t.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1gn8.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1h1t.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1qjc.b . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1b6t.a is apo
1b6t.b:cod
1gn8.a:atp
1h1t.a:coa
1qjc.b:pns
[1] 1b6t.a
-
0.6 1.1 0.1 0.6
[1] 1b6t.b -
0.3
0.2 1.5 0.2
[1] 1gn8.a - 0.3
0.2
0.5 0.5
[1] 1h1t.a - 0.4 0.8
0.2
0.1
[1] 1qjc.b - 0.4 0.2 2.2
0.1
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1b6t.a
1b6t.b
1gn8.a
1h1t.a
1qjc.b
[1] 1b6t.a
0
.11 .05 .03 .13
[1] 1b6t.b .11
0
.07 .09 .05
[1] 1gn8.a .05 .07
0
.04 .10
[1] 1h1t.a .03 .09 .04
0
.11
[1] 1qjc.b .13 .05 .10 .11
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.0 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1b6t.a
1b6t.b
1gn8.a
1h1t.a
1qjc.b
[1] 1b6t.a
0
1.1 0.7 0.4 1.2
[1] 1b6t.b 1.1
0
1.1 1.1 0.4
[1] 1gn8.a 0.7 1.1
0
0.5 1.2
[1] 1h1t.a 0.4 1.1 0.5
0
1.1
[1] 1qjc.b 1.2 0.4 1.2 1.1
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.7 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1b6t.a
1b6t.b
1gn8.a
1h1t.a
1qjc.b
[1] 1b6t.a
0
1.8 0.9 0.7 1.8
[1] 1b6t.b 1.8
0
1.9 1.7 0.7
[1] 1gn8.a 0.9 1.9
0
0.9 1.9
[1] 1h1t.a 0.7 1.7 0.9
0
1.8
[1] 1qjc.b 1.8 0.7 1.9 1.8
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...