If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

CLPP_BACSU_2_196

ATP-dependent Clp protease proteolytic subunit [Peptidase S14 family]

Composition of the binding site

Protein chains monomer
A1 (CLPP_BACSU):69, 71, 98, 99, 102, 122:126, 147, 150, 16969, 71, 98, 99, 102, 122:126, 147, 150, 169

Full PDB list

3ktg, 3kth, 3kti, 3ktj, 3ktk, 3tt6, 3tt7 (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
G
6
9
I
7
1
S
9
8
M
9
9
H
1
2
3
Q
1
2
4
P
1
2
5
L
1
2
6
L
1
5
0
[1]3tt7.d dfp10 . . * . . . . . .
[2]3tt6.c none . . . . . . . - .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
G
6
9
I
7
1
S
9
8
M
9
9
F
1
0
2
I
1
2
2
H
1
2
3
Q
1
2
4
P
1
2
5
L
1
2
6
R
1
4
7
L
1
5
0
T
1
6
9
[1]3tt7.d . . * . . . . . . . . . .
[2]3tt6.c . . * . . . . * * - . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
3tt7.d:dfp
3tt6.c is apo
[1] 3tt7.d
0.6
-
[2] 3tt6.c 4.6
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (2 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
3tt7.d
3tt6.c
[1] 3tt7.d
0
.31
[2] 3tt6.c .31
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3tt7.d
3tt6.c
[1] 3tt7.d
0
1.9
[2] 3tt6.c 1.9
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.9 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3tt7.d
3tt6.c
[1] 3tt7.d
0
3.2
[2] 3tt6.c 3.2
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...