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CHMU_YEAST_1_256

Chorismate mutase

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (CHMU_YEAST):D: Chorismate mutase (16, 157, 164, 168, 192:194, 198, 201, 239, 242, 243, 246)16, 157, 164, 168, 192:194, 198, 201, 239, 242, 243, 246

Full PDB list

1csm, 2csm, 3csm, 4csm, 5csm (redundant Pocketome entry)

Pocket contact map

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PDB.ch
   
ligand
A1
R
1
6
R
1
5
7
V
1
6
4
K
1
6
8
I
1
9
2
T
1
9
3
N
1
9
4
E
1
9
8
I
2
0
1
I
2
3
9
T
2
4
2
K
2
4
3
E
2
4
6
[1]1csm.b none . . . . . . . . . . . . .
[1]3csm.a tsa16 . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
R
1
6
R
1
5
7
V
1
6
4
K
1
6
8
I
1
9
2
T
1
9
3
N
1
9
4
E
1
9
8
I
2
0
1
I
2
3
9
T
2
4
2
K
2
4
3
E
2
4
6
[1]1csm.b . . . . . . . . . . . . .
[1]3csm.a . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1csm.b is apo
3csm.a:tsa
[1] 1csm.b
-
0.4
[1] 3csm.a -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1csm.b
3csm.a
[1] 1csm.b
0
.03
[1] 3csm.a .03
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1csm.b
3csm.a
[1] 1csm.b
0
0.6
[1] 3csm.a 0.6
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1csm.b
3csm.a
[1] 1csm.b
0
1.1
[1] 3csm.a 1.1
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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