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CD44_MOUSE_21_171

CD44 antigen

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (CD44_MOUSE):D: Link (37, 39, 42:44, 78:81, 90, 96, 98:101, 103, 107)
27:29, 151:153
27:29, 37, 39, 42:44, 78:81, 90, 96, 98:101, 103, 107, 151:153

Full PDB list

2jcp, 2jcq, 2jcr, 4mrd, 4mre, 4mrf, 4mrg, 4mrh, 4np2, 4np3, 5bzc, 5bze, 5bzf, 5bzg, 5bzh, 5bzi, 5bzj, 5bzk, 5bzl, 5bzm, 5bzn, 5bzo, 5bzp, 5bzq, 5bzr, 5bzs, 5bzt (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
N
2
7
V
2
8
T
2
9
H
3
7
E
3
9
G
4
2
R
4
3
Y
4
4
T
7
8
C
7
9
R
8
0
Y
8
1
I
9
0
N
9
6
I
9
8
C
9
9
A
1
0
0
A
1
0
1
Y
1
0
7
V
1
5
1
N
1
5
2
R
1
5
3
[1]2jcr.a nag.bdp.nag.bdp.nag.bdp.nag93 . . . . . . . . . . . . . . . . . . . . . .
[1]4mrd.a none . . . . . . . . . . . . . . . . . . . . . .
[1]4mre.a 2c99 . . . . . . . . . . . . . . . . . . . . . .
[1]4mrf.a 2ck10 . . . . . . . . . . . . . . . . . . . . . .
[1]4mrg.a 24w11 . . . . . . . . . . . . . . . . . . . . . .
[1]4np2.a 2l117 . . . . . . . . . . . . . . . . . . . . . .
[1]4np3.a 2l218 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzc.a 4wt12 . . . . . . . . . . . . . . . . . . . . . .
[1]5bze.a 68n,6bt24 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzf.a 4x313 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzg.a 4x612 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzh.a 4x114 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzi.a 4wu11 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzj.a 4wn19 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzk.a 4wp16 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzl.a 4wo17 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzm.a 4x820 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzn.a 4xd15 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzo.a 4xc17 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzp.a 4xg17 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzq.a 4xl20 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzr.a 4xm21 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzs.a 4xk21 . . . . . . . . . . . . . . . . . . . . . .
[1]5bzt.a 4xj18 . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
N
2
7
V
2
8
T
2
9
H
3
7
E
3
9
G
4
2
R
4
3
Y
4
4
T
7
8
C
7
9
R
8
0
Y
8
1
I
9
0
N
9
6
I
9
8
C
9
9
A
1
0
0
A
1
0
1
H
1
0
3
Y
1
0
7
V
1
5
1
N
1
5
2
R
1
5
3
[1]2jcr.a . . . . . . . . . . * . . . . . . . . . . . .
[1]4mrd.a . . . . . . . . . . * . . . . . . . . . . . .
[1]4mre.a . . . . . . . . . . . . . . . . . . . . . . .
[1]4mrf.a . . . . . . . . . . . . . . . . . . . . . . .
[1]4mrg.a . . . . . . . . . . . . . . . . . . . . . . .
[1]4np2.a . . . . . . . . . . . . . . . . . . . . . . .
[1]4np3.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzc.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bze.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzf.a . . . . * . . . . . . . . . . . . . . . . . .
[1]5bzg.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzh.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzi.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzj.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzk.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzl.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzm.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzn.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzo.a . . . . * . . . . . . . . . . . . . . . . . .
[1]5bzp.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzq.a . . . . * . . . . . . . . . . . . . . . . . .
[1]5bzr.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzs.a . . . . . . . . . . . . . . . . . . . . . . .
[1]5bzt.a . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
2jcr.a:nag.bdp.nag.bdp.nag.bdp.nag
4mrd.a is apo
4mre.a:2c9
4mrf.a:2ck
4mrg.a:24w
4np2.a:2l1
4np3.a:2l2
5bzc.a:4wt
5bze.a:68n,6bt
5bzf.a:4x3
5bzg.a:4x6
5bzh.a:4x1
5bzi.a:4wu
5bzj.a:4wn
5bzk.a:4wp
5bzl.a:4wo
5bzm.a:4x8
5bzn.a:4xd
5bzo.a:4xc
5bzp.a:4xg
5bzq.a:4xl
5bzr.a:4xm
5bzs.a:4xk
5bzt.a:4xj
[1] 2jcr.a
0
- 0.4 0.4 0.4 1.6 1.7 0.4 0.4 0.4 0.4 1.3 0.4 1.5 0.4 0.4 1.7 0.4 0.6 1.5 0.4 0.4 1.4 0.4
[1] 4mrd.a 0.3
-
0.1 0.1 0.1 1.7 1.7 0.1 0.1 0.1 0.1 1.3 0.1 1.7 0.1 0.1 1.7 0.1 0.2 1.7 0.1 0.1 1.3 0.1
[1] 4mre.a 0.4 -
0
0 0 0.1 0.2 0.2 0.4 0 0 0 0 0.1 0 0.3 0.2 0.1 0 0 0 0 0 0.1
[1] 4mrf.a 0.3 - 0
0
0 0.1 0.1 0 0 0 0 0.1 0 0.1 0 0.2 0.1 0.2 0 0.1 0 0 0 0.2
[1] 4mrg.a 0.2 - 0 0
0
0.1 0.2 0 0.4 0 0 0 0 0.1 0 0.3 0.2 0.3 0 0 0 0 0 0.2
[1] 4np2.a 0.2 - 0 0 0
0.1
0.1 0 0 0 0 0 0 0.1 0 0 0.1 0 0 0 0 0 0.1 0
[1] 4np3.a 0.3 - 0 0 0 0
0.1
0 0 0 0 0 0 0 0 0 0.1 0 0 0 0 0 0.1 0
[1] 5bzc.a 0.3 - 0 0 0 0.2 0.4
0
0 0 0 0 0 0.1 0 0.2 0.4 0.2 0 0.1 0 0 0 0.1
[1] 5bze.a 0 - 0 0 0 0.4 0.4 0
0
0 0 0.1 0 0.1 0 0.2 0.4 0.2 0 0.1 0 0 0.1 0.2
[1] 5bzf.a 0.3 - 0 0 0 0.1 0.1 0.2 0.6
0
0 0 0 0.2 0 0.3 0.2 0.2 0 0 0 0 0 0.1
[1] 5bzg.a 0.2 - 0 0 0 0.2 0.2 0.1 0.4 0
0
0.2 0 0.1 0 0.1 0.2 0.1 0 0 0 0 0 0.1
[1] 5bzh.a 0.2 - 0 0 0 0.1 0.1 0 0 0 0
0
0 0.1 0 0.2 0.1 0.1 0 0 0 0 0 0.1
[1] 5bzi.a 0.2 - 0 0 0 0.1 0.1 0 0 0 0 0.1
0
0.1 0 0 0.1 0 0 0.1 0 0 0 0
[1] 5bzj.a 0.2 - 0 0 0 0 0.1 0 0.1 0 0 0 0
0
0 0.1 0.1 0 0 0 0 0 0 0
[1] 5bzk.a 0.3 - 0 0 0 0.1 0.1 0 0 0 0 0.1 0 0.1
0
0.1 0.1 0 0 0.1 0 0 0.1 0
[1] 5bzl.a 0 - 0 0 0.1 0.1 0.1 0.1 0.1 0 0 0.1 0 0 0
0
0.1 0 0 0 0 0 0 0
[1] 5bzm.a 0.2 - 0 0 0 0 0 0 0.2 0 0 0 0 0 0 0
0
0 0 0 0 0 0.1 0
[1] 5bzn.a 0.2 - 0 0 0.1 0.1 0.2 0.1 0.1 0 0 0 0.1 0.1 0 0 0.2
0
0 0 0 0 0.4 0
[1] 5bzo.a 0.3 - 0 0 0 0.1 0.1 0.2 0.6 0 0 0.1 0 0.1 0 0.5 0.1 0.2
0
0 0 0 0 0.1
[1] 5bzp.a 0.3 - 0 0 0 0.1 0.1 0.2 0.4 0 0 0 0 0.1 0 0.2 0.1 0.1 0
0
0 0 0 0.1
[1] 5bzq.a 0.2 - 0 0 0 0.1 0.1 0.2 0.6 0 0 0.1 0.1 0.1 0 0.4 0.2 0.1 0.1 0.1
0
0 0.1 0.1
[1] 5bzr.a 0.5 - 0 0 0 0.1 0 0 0 0 0 0.1 0 0.1 0 0 0.1 0 0 0.1 0
0
0.1 0
[1] 5bzs.a 0.3 - 0 0 0 0.1 0.1 0.2 0.4 0 0 0 0 0 0 0.2 0.1 0.1 0 0 0 0
0
0.1
[1] 5bzt.a 0 - 0 0 0 0 0.1 0 0.1 0 0 0 0 0 0 0 0.1 0 0 0 0 0 0.1
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
2jcr.a
4mrd.a
4mre.a
4mrf.a
4mrg.a
4np2.a
4np3.a
5bzc.a
5bze.a
5bzf.a
5bzg.a
5bzh.a
5bzi.a
5bzj.a
5bzk.a
5bzl.a
5bzm.a
5bzn.a
5bzo.a
5bzp.a
5bzq.a
5bzr.a
5bzs.a
5bzt.a
[1] 2jcr.a
0
.05 .12 .11 .12 .10 .10 .13 .11 .13 .11 .11 .10 .10 .10 .09 .10 .09 .13 .12 .13 .11 .12 .09
[1] 4mrd.a .05
0
.13 .12 .13 .11 .10 .13 .13 .14 .13 .12 .11 .12 .11 .11 .11 .11 .15 .13 .14 .10 .13 .11
[1] 4mre.a .12 .13
0
.03 .02 .03 .02 .02 .03 .03 .01 .03 .02 .03 .03 .03 .02 .04 .03 .01 .02 .03 .01 .03
[1] 4mrf.a .11 .12 .03
0
.02 .02 .02 .01 .03 .03 .03 0 .01 .01 .01 .02 .02 .04 .03 .03 .03 .02 .03 .03
[1] 4mrg.a .12 .13 .02 .02
0
.03 .03 0 .01 .02 .01 .01 .02 .02 .03 .03 .02 .04 .01 .01 .01 .04 .01 .03
[1] 4np2.a .10 .11 .03 .02 .03
0
0 .03 .03 .03 .02 .01 0 .01 .01 .01 0 .03 .04 .03 .03 .01 .03 .01
[1] 4np3.a .10 .10 .02 .02 .03 0
0
.03 .03 .04 .02 .02 .01 .01 .01 .02 .01 .03 .04 .02 .03 .01 .02 .01
[1] 5bzc.a .13 .13 .02 .01 0 .03 .03
0
.02 .02 .01 .02 .03 .02 .02 .03 .03 .05 .02 .01 .02 .03 .01 .04
[1] 5bze.a .11 .13 .03 .03 .01 .03 .03 .02
0
.02 .02 .03 .03 .03 .03 .03 .03 .03 .03 .02 .03 .04 .02 .02
[1] 5bzf.a .13 .14 .03 .03 .02 .03 .04 .02 .02
0
.03 .03 .04 .03 .03 .05 .03 .05 .01 .03 .01 .05 .03 .04
[1] 5bzg.a .11 .13 .01 .03 .01 .02 .02 .01 .02 .03
0
.02 .01 .02 .03 .02 .01 .03 .02 .01 .01 .03 .01 .03
[1] 5bzh.a .11 .12 .03 0 .01 .01 .02 .02 .03 .03 .02
0
.01 0 .01 .02 .02 .04 .03 .02 .03 .03 .02 .02
[1] 5bzi.a .10 .11 .02 .01 .02 0 .01 .03 .03 .04 .01 .01
0
0 .01 .01 .01 .03 .03 .02 .03 .02 .02 .01
[1] 5bzj.a .10 .12 .03 .01 .02 .01 .01 .02 .03 .03 .02 0 0
0
.01 .01 .01 .03 .03 .02 .02 .02 .02 .02
[1] 5bzk.a .10 .11 .03 .01 .03 .01 .01 .02 .03 .03 .03 .01 .01 .01
0
.02 .01 .03 .04 .03 .03 .01 .03 .02
[1] 5bzl.a .09 .11 .03 .02 .03 .01 .02 .03 .03 .05 .02 .02 .01 .01 .02
0
.02 .02 .04 .03 .03 .03 .03 0
[1] 5bzm.a .10 .11 .02 .02 .02 0 .01 .03 .03 .03 .01 .02 .01 .01 .01 .02
0
.02 .03 .02 .03 .02 .02 .01
[1] 5bzn.a .09 .11 .04 .04 .04 .03 .03 .05 .03 .05 .03 .04 .03 .03 .03 .02 .02
0
.05 .04 .05 .03 .04 .02
[1] 5bzo.a .13 .15 .03 .03 .01 .04 .04 .02 .03 .01 .02 .03 .03 .03 .04 .04 .03 .05
0
.02 .01 .04 .02 .05
[1] 5bzp.a .12 .13 .01 .03 .01 .03 .02 .01 .02 .03 .01 .02 .02 .02 .03 .03 .02 .04 .02
0
.01 .03 0 .03
[1] 5bzq.a .13 .14 .02 .03 .01 .03 .03 .02 .03 .01 .01 .03 .03 .02 .03 .03 .03 .05 .01 .01
0
.04 .01 .04
[1] 5bzr.a .11 .10 .03 .02 .04 .01 .01 .03 .04 .05 .03 .03 .02 .02 .01 .03 .02 .03 .04 .03 .04
0
.03 .02
[1] 5bzs.a .12 .13 .01 .03 .01 .03 .02 .01 .02 .03 .01 .02 .02 .02 .03 .03 .02 .04 .02 0 .01 .03
0
.03
[1] 5bzt.a .09 .11 .03 .03 .03 .01 .01 .04 .02 .04 .03 .02 .01 .02 .02 0 .01 .02 .05 .03 .04 .02 .03
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2jcr.a
4mrd.a
4mre.a
4mrf.a
4mrg.a
4np2.a
4np3.a
5bzc.a
5bze.a
5bzf.a
5bzg.a
5bzh.a
5bzi.a
5bzj.a
5bzk.a
5bzl.a
5bzm.a
5bzn.a
5bzo.a
5bzp.a
5bzq.a
5bzr.a
5bzs.a
5bzt.a
[1] 2jcr.a
0
0.3 0.8 0.8 0.8 0.8 0.9 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.9 0.8
[1] 4mrd.a 0.3
0
0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.8 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9
[1] 4mre.a 0.8 0.9
0
0.2 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.1 0.2 0.1 0.2 0.2 0.1 0.4 0.1 0.1 0.1 0.2 0.1 0.2
[1] 4mrf.a 0.8 0.9 0.2
0
0.1 0.2 0.2 0.1 0.1 0.2 0.2 0.1 0.1 0.1 0.1 0.2 0.1 0.4 0.2 0.2 0.1 0.2 0.2 0.3
[1] 4mrg.a 0.8 0.9 0.1 0.1
0
0.1 0.1 0.1 0.1 0.2 0.2 0.1 0.2 0.1 0.2 0.2 0.1 0.4 0.1 0.1 0.1 0.2 0.1 0.3
[1] 4np2.a 0.8 0.9 0.1 0.2 0.1
0
0.1 0.1 0.1 0.2 0.2 0.1 0.1 0.1 0.2 0.2 0.1 0.3 0.2 0.1 0.1 0.2 0.2 0.2
[1] 4np3.a 0.9 0.9 0.1 0.2 0.1 0.1
0
0.2 0.2 0.3 0.2 0.2 0.2 0.1 0.2 0.2 0.1 0.4 0.2 0.1 0.2 0.3 0.2 0.3
[1] 5bzc.a 0.8 0.9 0.1 0.1 0.1 0.1 0.2
0
0.1 0.2 0.1 0.1 0.2 0.1 0.2 0.2 0.2 0.4 0.2 0.2 0.2 0.2 0.2 0.3
[1] 5bze.a 0.8 0.9 0.1 0.1 0.1 0.1 0.2 0.1
0
0.3 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.3 0.2 0.1 0.1 0.2 0.2 0.2
[1] 5bzf.a 0.8 0.9 0.2 0.2 0.2 0.2 0.3 0.2 0.3
0
0.2 0.2 0.3 0.2 0.3 0.3 0.2 0.5 0.2 0.2 0.2 0.3 0.2 0.4
[1] 5bzg.a 0.8 0.9 0.2 0.2 0.2 0.2 0.2 0.1 0.1 0.2
0
0.1 0.1 0.2 0.1 0.2 0.2 0.4 0.2 0.2 0.2 0.2 0.2 0.3
[1] 5bzh.a 0.8 0.9 0.1 0.1 0.1 0.1 0.2 0.1 0.1 0.2 0.1
0
0.1 0.1 0.2 0.2 0.2 0.4 0.1 0.2 0.2 0.2 0.1 0.3
[1] 5bzi.a 0.8 0.9 0.2 0.1 0.2 0.1 0.2 0.2 0.1 0.3 0.1 0.1
0
0.2 0.1 0.2 0.2 0.4 0.2 0.2 0.2 0.1 0.2 0.3
[1] 5bzj.a 0.8 0.9 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.2 0.2 0.1 0.2
0
0.2 0.2 0.1 0.4 0.1 0.1 0.1 0.2 0.1 0.3
[1] 5bzk.a 0.8 0.8 0.2 0.1 0.2 0.2 0.2 0.2 0.1 0.3 0.1 0.2 0.1 0.2
0
0.3 0.2 0.4 0.2 0.2 0.2 0.1 0.2 0.3
[1] 5bzl.a 0.8 0.9 0.2 0.2 0.2 0.2 0.2 0.2 0.1 0.3 0.2 0.2 0.2 0.2 0.3
0
0.2 0.2 0.3 0.2 0.2 0.3 0.3 0.1
[1] 5bzm.a 0.8 0.9 0.1 0.1 0.1 0.1 0.1 0.2 0.1 0.2 0.2 0.2 0.2 0.1 0.2 0.2
0
0.4 0.2 0.1 0.1 0.3 0.2 0.2
[1] 5bzn.a 0.8 0.9 0.4 0.4 0.4 0.3 0.4 0.4 0.3 0.5 0.4 0.4 0.4 0.4 0.4 0.2 0.4
0
0.5 0.3 0.4 0.5 0.4 0.2
[1] 5bzo.a 0.8 0.9 0.1 0.2 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.1 0.2 0.1 0.2 0.3 0.2 0.5
0
0.1 0.1 0.2 0.1 0.3
[1] 5bzp.a 0.8 0.9 0.1 0.2 0.1 0.1 0.1 0.2 0.1 0.2 0.2 0.2 0.2 0.1 0.2 0.2 0.1 0.3 0.1
0
0.1 0.2 0.1 0.2
[1] 5bzq.a 0.8 0.9 0.1 0.1 0.1 0.1 0.2 0.2 0.1 0.2 0.2 0.2 0.2 0.1 0.2 0.2 0.1 0.4 0.1 0.1
0
0.2 0.1 0.2
[1] 5bzr.a 0.8 0.9 0.2 0.2 0.2 0.2 0.3 0.2 0.2 0.3 0.2 0.2 0.1 0.2 0.1 0.3 0.3 0.5 0.2 0.2 0.2
0
0.2 0.3
[1] 5bzs.a 0.9 0.9 0.1 0.2 0.1 0.2 0.2 0.2 0.2 0.2 0.2 0.1 0.2 0.1 0.2 0.3 0.2 0.4 0.1 0.1 0.1 0.2
0
0.3
[1] 5bzt.a 0.8 0.9 0.2 0.3 0.3 0.2 0.3 0.3 0.2 0.4 0.3 0.3 0.3 0.3 0.3 0.1 0.2 0.2 0.3 0.2 0.2 0.3 0.3
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2jcr.a
4mrd.a
4mre.a
4mrf.a
4mrg.a
4np2.a
4np3.a
5bzc.a
5bze.a
5bzf.a
5bzg.a
5bzh.a
5bzi.a
5bzj.a
5bzk.a
5bzl.a
5bzm.a
5bzn.a
5bzo.a
5bzp.a
5bzq.a
5bzr.a
5bzs.a
5bzt.a
[1] 2jcr.a
0
0.9 2.4 2.3 2.4 2.4 2.4 2.4 2.4 2.3 2.3 2.3 2.4 2.4 2.4 2.4 2.4 2.3 2.4 2.4 2.4 2.3 2.4 2.4
[1] 4mrd.a 0.9
0
2.3 2.2 2.3 2.3 2.3 2.3 2.3 2.2 2.2 2.2 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3
[1] 4mre.a 2.4 2.3
0
0.6 0.3 0.4 0.5 0.5 0.4 0.5 0.4 0.3 0.5 0.4 0.5 0.5 0.4 0.7 0.5 0.4 0.5 0.5 0.4 0.5
[1] 4mrf.a 2.3 2.2 0.6
0
0.6 0.5 0.7 0.3 0.5 0.5 0.5 0.5 0.6 0.6 0.5 0.6 0.6 0.7 0.7 0.7 0.7 0.6 0.6 0.7
[1] 4mrg.a 2.4 2.3 0.3 0.6
0
0.4 0.5 0.4 0.5 0.5 0.4 0.4 0.6 0.4 0.5 0.5 0.5 0.7 0.5 0.4 0.5 0.5 0.4 0.6
[1] 4np2.a 2.4 2.3 0.4 0.5 0.4
0
0.4 0.3 0.3 0.5 0.4 0.3 0.4 0.3 0.3 0.3 0.3 0.5 0.4 0.5 0.4 0.4 0.3 0.4
[1] 4np3.a 2.4 2.3 0.5 0.7 0.5 0.4
0
0.5 0.3 0.6 0.4 0.5 0.3 0.3 0.4 0.3 0.3 0.4 0.3 0.3 0.2 0.5 0.3 0.3
[1] 5bzc.a 2.4 2.3 0.5 0.3 0.4 0.3 0.5
0
0.4 0.4 0.4 0.4 0.5 0.4 0.5 0.5 0.4 0.7 0.5 0.6 0.5 0.5 0.5 0.6
[1] 5bze.a 2.4 2.3 0.4 0.5 0.5 0.3 0.3 0.4
0
0.5 0.3 0.4 0.3 0.2 0.2 0.2 0.2 0.5 0.4 0.4 0.3 0.3 0.3 0.4
[1] 5bzf.a 2.3 2.2 0.5 0.5 0.5 0.5 0.6 0.4 0.5
0
0.5 0.5 0.6 0.5 0.6 0.6 0.5 0.7 0.5 0.6 0.5 0.6 0.5 0.6
[1] 5bzg.a 2.3 2.2 0.4 0.5 0.4 0.4 0.4 0.4 0.3 0.5
0
0.3 0.4 0.3 0.3 0.4 0.3 0.6 0.4 0.4 0.4 0.3 0.3 0.5
[1] 5bzh.a 2.3 2.2 0.3 0.5 0.4 0.3 0.5 0.4 0.4 0.5 0.3
0
0.4 0.4 0.4 0.4 0.4 0.6 0.5 0.4 0.5 0.4 0.4 0.5
[1] 5bzi.a 2.4 2.3 0.5 0.6 0.6 0.4 0.3 0.5 0.3 0.6 0.4 0.4
0
0.4 0.3 0.4 0.4 0.5 0.3 0.4 0.3 0.3 0.4 0.3
[1] 5bzj.a 2.4 2.3 0.4 0.6 0.4 0.3 0.3 0.4 0.2 0.5 0.3 0.4 0.4
0
0.3 0.3 0.1 0.5 0.3 0.4 0.3 0.3 0.2 0.4
[1] 5bzk.a 2.4 2.3 0.5 0.5 0.5 0.3 0.4 0.5 0.2 0.6 0.3 0.4 0.3 0.3
0
0.3 0.3 0.6 0.4 0.5 0.4 0.3 0.4 0.4
[1] 5bzl.a 2.4 2.3 0.5 0.6 0.5 0.3 0.3 0.5 0.2 0.6 0.4 0.4 0.4 0.3 0.3
0
0.2 0.4 0.4 0.4 0.4 0.4 0.3 0.3
[1] 5bzm.a 2.4 2.3 0.4 0.6 0.5 0.3 0.3 0.4 0.2 0.5 0.3 0.4 0.4 0.1 0.3 0.2
0
0.5 0.3 0.4 0.3 0.4 0.2 0.3
[1] 5bzn.a 2.3 2.3 0.7 0.7 0.7 0.5 0.4 0.7 0.5 0.7 0.6 0.6 0.5 0.5 0.6 0.4 0.5
0
0.5 0.5 0.5 0.6 0.6 0.3
[1] 5bzo.a 2.4 2.3 0.5 0.7 0.5 0.4 0.3 0.5 0.4 0.5 0.4 0.5 0.3 0.3 0.4 0.4 0.3 0.5
0
0.3 0.1 0.4 0.3 0.3
[1] 5bzp.a 2.4 2.3 0.4 0.7 0.4 0.5 0.3 0.6 0.4 0.6 0.4 0.4 0.4 0.4 0.5 0.4 0.4 0.5 0.3
0
0.2 0.5 0.4 0.3
[1] 5bzq.a 2.4 2.3 0.5 0.7 0.5 0.4 0.2 0.5 0.3 0.5 0.4 0.5 0.3 0.3 0.4 0.4 0.3 0.5 0.1 0.2
0
0.4 0.3 0.3
[1] 5bzr.a 2.3 2.3 0.5 0.6 0.5 0.4 0.5 0.5 0.3 0.6 0.3 0.4 0.3 0.3 0.3 0.4 0.4 0.6 0.4 0.5 0.4
0
0.4 0.5
[1] 5bzs.a 2.4 2.3 0.4 0.6 0.4 0.3 0.3 0.5 0.3 0.5 0.3 0.4 0.4 0.2 0.4 0.3 0.2 0.6 0.3 0.4 0.3 0.4
0
0.4
[1] 5bzt.a 2.4 2.3 0.5 0.7 0.6 0.4 0.3 0.6 0.4 0.6 0.5 0.5 0.3 0.4 0.4 0.3 0.3 0.3 0.3 0.3 0.3 0.5 0.4
0
[Binding site full-atom RMSD matrix]







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[ENTRY 2D visualization]

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