CD1D_HUMAN_20_296

Antigen-presenting glycoprotein CD1d

ActiveICM:

L C E

Composition of the binding pockets

Protein chains monomer[show domain annotation]
 • A1 (CD1D_HUMAN):R: Glycolipid binding (169,171,172)
D: Ig-like (187)
28,30:32,46:48,56,58,65,81,84,86:88,90,91,94,95,97:99,102,108,112,114,116,118,132,134,136,142,149,158,166,175,176,179,184
28,30:32,46:48,56,58,65,81,84,86:88,90,91,94,95,97:99,102,108,112,114,116,118,132,134,136,142,149,158,166,169,171,172,175,176,179,184,187

Full PDB list

1zt4,2po6,3huj,3sdx,3tzv,3u0p,3vwj,3vwk,4en3,4lhu,4wo4,4ww2,4wwk (redundant pocketome entry)

Contact map

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ligand
A1
L
2
8
C
3
0
L
3
1
Q
3
2
G
4
6
L
4
7
A
4
8
H
5
6
W
5
8
V
6
5
W
8
1
L
8
4
H
8
6
I
8
7
F
8
8
V
9
0
Y
9
1
S
9
4
F
9
5
R
9
7
D
9
8
V
9
9
F
1
0
2
L
1
0
8
L
1
1
2
L
1
1
4
V
1
1
6
A
1
1
8
F
1
3
2
V
1
3
4
F
1
3
6
L
1
4
2
W
1
4
9
W
1
5
8
L
1
6
6
D
1
6
9
W
1
7
1
T
1
7
2
T
1
7
5
V
1
7
6
L
1
7
9
C
1
8
4
F
1
8
7
[1]3tzv.c d12,hex,lsc 53 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3u0p.a hex,lsc,und 52 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3u0p.c lsc 35 . . . . . . . . . . . - . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3u0p.e none . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3huj.c agh 60 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3sdx.a gcy 45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3vwj.a db3 54 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3vwk.a 4gh 58 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4lhu.a jls,N 66 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4ww2.c jls 58 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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