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CAT4_PSEAE_1_212

Chloramphenicol acetyltransferase [Transferase hexapeptide repeat family]

Composition of the binding site

Protein chains homodimer
A1 (CAT4_PSEAE):8:11, 30, 328:11, 30, 32
A2 (CAT4_PSEAE):48, 74, 77, 79, 91, 92, 10548, 74, 77, 79, 91, 92, 105

Full PDB list

1xat, 2xat

Pocket contact map

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PDB.ch
   
ligand
A1 A2
P
8
F
9
R
1
0
G
1
1
Y
3
0
S
3
2
M
4
8
A
7
4
Q
7
7
H
7
9
F
9
1
M
9
2
Y
1
0
5
[1]1xat.a none . . . . . . . . . . . . .
[1]2xat.a clm20 . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1 A2
P
8
F
9
R
1
0
G
1
1
Y
3
0
S
3
2
M
4
8
A
7
4
Q
7
7
H
7
9
F
9
1
M
9
2
Y
1
0
5
[1]1xat.a . . . . . . . . . . . . .
[1]2xat.a . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1xat.a is apo
2xat.a:clm
[1] 1xat.a
-
0.2
[1] 2xat.a -
0.2
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1xat.a
2xat.a
[1] 1xat.a
0
.02
[1] 2xat.a .02
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1xat.a
2xat.a
[1] 1xat.a
0
0.3
[1] 2xat.a 0.3
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1xat.a
2xat.a
[1] 1xat.a
0
0.7
[1] 2xat.a 0.7
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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