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CAR4_ARATH_1_176

Protein C2-DOMAIN ABA-RELATED 4 [Plant CAR protein family]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (CAR4_ARATH):D: C2 (41, 52:55, 86, 92)41, 52:55, 86, 92
Metals (Me):Ca

Full PDB list

4v29, 5a4x, 5a50, 5a51 (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 Me
Y
4
1
K
5
2
T
5
3
R
5
4
V
5
5
H
8
6
D
9
2
[1]4v29.b none . . . . . . . Ca
[1]5a4x.b zn1 . . . . . . . Ca
[1]5a50.b pc,zn12 . . . . . . . Ca

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 Me
Y
4
1
K
5
2
T
5
3
R
5
4
V
5
5
H
8
6
D
9
2
[1]4v29.b . . . . . . . Ca
[1]5a4x.b . . . . . . . Ca
[1]5a50.b . . . . . . . Ca

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4v29.b is apo
5a4x.b:zn
5a50.b:pc,zn
[1] 4v29.b
-
0.4 0.7
[1] 5a4x.b -
0.2
0.3
[1] 5a50.b - 0.2
0.3
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4v29.b
5a4x.b
5a50.b
[1] 4v29.b
0
.06 .09
[1] 5a4x.b .06
0
.03
[1] 5a50.b .09 .03
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4v29.b
5a4x.b
5a50.b
[1] 4v29.b
0
0.1 0.1
[1] 5a4x.b 0.1
0
0.1
[1] 5a50.b 0.1 0.1
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4v29.b
5a4x.b
5a50.b
[1] 4v29.b
0
0.6 0.6
[1] 5a4x.b 0.6
0
0.3
[1] 5a50.b 0.6 0.3
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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