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CAMK_RHOSO_1_257

6-oxocamphor hydrolase [Enoyl-CoA hydratase/isomerase family]

Composition of the binding site

Protein chains monomer
A1 (CAMK_RHOSO):40, 45, 77, 82, 84, 90, 93, 122, 144, 145, 154, 24440, 45, 77, 82, 84, 90, 93, 122, 144, 145, 154, 244

Full PDB list

1o8u, 1szo

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
W
4
0
H
4
5
I
7
7
F
8
2
L
8
4
W
9
0
I
9
3
P
1
4
4
H
1
4
5
D
1
5
4
E
2
4
4
[1]1o8u.a none . . . . . . . . . . .
[1]1szo.a cax13 . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
W
4
0
H
4
5
I
7
7
F
8
2
L
8
4
W
9
0
I
9
3
H
1
2
2
P
1
4
4
H
1
4
5
D
1
5
4
E
2
4
4
[1]1o8u.a . . . . . . . . . . . .
[1]1szo.a . . . . . . . A . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1o8u.a is apo
1szo.a:cax
[1] 1o8u.a
-
0.2
[1] 1szo.a -
0.1
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1o8u.a
1szo.a
[1] 1o8u.a
0
.01
[1] 1szo.a .01
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1o8u.a
1szo.a
[1] 1o8u.a
0
0.5
[1] 1szo.a 0.5
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1o8u.a
1szo.a
[1] 1o8u.a
0
0.6
[1] 1szo.a 0.6
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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