If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

C209B_MOUSE_183_324

CD209 antigen-like protein B

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (C209B_MOUSE):D: C-type lectin (213, 249:251, 285, 287, 288, 292, 296, 303:305, 309, 311, 312)213, 249:251, 285, 287, 288, 292, 296, 303:305, 309, 311, 312
Metals (Me):Ca

Full PDB list

3zhg, 4c9f, 4caj (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 Me
Q
2
1
3
K
2
4
9
G
2
5
0
P
2
5
1
E
2
8
5
N
2
8
7
N
2
8
8
E
2
9
2
E
2
9
6
N
3
0
3
D
3
0
4
S
3
0
5
L
3
0
9
K
3
1
1
[1]4c9f.b gq223 . . . . . . . . . . . . . . Ca
[1]4c9f.c gq449 . . . . . . . . . . . . . . Ca
[1]4caj.a none . . . . . . . . . . . . . . Ca

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 Me
Q
2
1
3
K
2
4
9
G
2
5
0
P
2
5
1
E
2
8
5
N
2
8
7
N
2
8
8
E
2
9
2
E
2
9
6
N
3
0
3
D
3
0
4
S
3
0
5
L
3
0
9
K
3
1
1
F
3
1
2
[1]4c9f.b . . . . . . . . . . . . . . . Ca
[1]4c9f.c . . . . . . . . . . . . . . . Ca
[1]4caj.a . . . . . . . . . . . . . . . Ca

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4c9f.b:gq2
4c9f.c:gq4
4caj.a is apo
[1] 4c9f.b
0.2
0 -
[1] 4c9f.c 0.2
0
-
[1] 4caj.a 0.4 0
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4c9f.b
4c9f.c
4caj.a
[1] 4c9f.b
0
0 .01
[1] 4c9f.c 0
0
.01
[1] 4caj.a .01 .01
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4c9f.b
4c9f.c
4caj.a
[1] 4c9f.b
0
0.3 0.3
[1] 4c9f.c 0.3
0
0.3
[1] 4caj.a 0.3 0.3
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4c9f.b
4c9f.c
4caj.a
[1] 4c9f.b
0
0.4 0.5
[1] 4c9f.c 0.4
0
0.5
[1] 4caj.a 0.5 0.5
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...