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BRPF1_HUMAN_625_740

Peregrin

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (BRPF1_HUMAN):R: Required for RUNX1 and RUNX2 transcriptional activation (650:653, 655:658, 660:665, 668, 703:709, 711:716)
D: Bromo (650:653, 655:658, 660:665, 668, 703:709, 711:715)
650:653, 655:658, 660:665, 668, 703:709, 711:716

Full PDB list

4lc2, 4qyd, 4qyl, 4uye, 5c7n, 5c85, 5c87, 5c89, 5d7x, 5dy7, 5dya, 5dyc, 5e3d, 5e3g, 5em3, 5epr, 5eps, 5eq1, 5etb, 5etd, 5ev9, 5eva, 5ewc, 5ewd, 5ewh, 5ewv, 5eww, 5ffv, 5ffw, 5ffy, 5fg4, 5fg5, 5g4r, 5g4s, 5mwg, 5mwh, 5mwz, 5myg, 5t4u, 5t4v

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
G
6
5
0
N
6
5
1
I
6
5
2
F
6
5
3
E
6
5
5
P
6
5
6
V
6
5
7
P
6
5
8
E
6
6
1
V
6
6
2
P
6
6
3
D
6
6
4
Y
6
6
5
H
6
6
8
N
7
0
3
C
7
0
4
L
7
0
5
K
7
0
6
Y
7
0
7
N
7
0
8
A
7
0
9
D
7
1
1
T
7
1
2
I
7
1
3
F
7
1
4
Y
7
1
5
R
7
1
6
[1]4lc2.a none . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qyd.a GGKGLGalyG49 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qyl.a SGRGalyQGGKA62 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4uye.a 9f929 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5c7n.a bmf28 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5c85.a 4yo12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5c87.a 4ys11 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5c89.a 4yt18 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5d7x.a xz819 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5dy7.a 5gt15 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5dya.a 5gv16 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5dyc.a 5gu12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5e3d.a 5jl12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5e3g.a 5jq12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5em3.a 5q0,5q022 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5epr.a 5qy12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5eps.a 5qx12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5eq1.a bea13 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5etb.a 5ro13 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5etd.a 5rn12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ev9.a 5sb19 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5eva.a 5s917 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ewc.a 5sj17 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ewd.a 5sh12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ewh.a 5sg11 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ewv.a 5sn15 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5eww.a 5sk19 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ffv.b STGGalyAPR56 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ffw.a SGRGalyGGalyGL70 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ffy.a 5xd26 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5fg4.a 5xe26 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5fg5.a 5xf28 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5g4r.c lf130 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5g4s.a 8vi32 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5mwg.a wgx34 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5mwh.a uwx34 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5mwz.a kgu33 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5myg.b ls827 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5t4u.a 12q12 . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5t4v.a n4827 . . . . . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
G
6
5
0
N
6
5
1
I
6
5
2
F
6
5
3
E
6
5
5
P
6
5
6
V
6
5
7
P
6
5
8
S
6
6
0
E
6
6
1
V
6
6
2
P
6
6
3
D
6
6
4
Y
6
6
5
H
6
6
8
N
7
0
3
C
7
0
4
L
7
0
5
K
7
0
6
Y
7
0
7
N
7
0
8
A
7
0
9
D
7
1
1
T
7
1
2
I
7
1
3
F
7
1
4
Y
7
1
5
R
7
1
6
[1]4lc2.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qyd.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qyl.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4uye.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5c7n.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5c85.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5c87.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5c89.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5d7x.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5dy7.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5dya.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5dyc.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5e3d.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5e3g.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5em3.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5epr.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5eps.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5eq1.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5etb.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5etd.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5ev9.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5eva.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ewc.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ewd.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5ewh.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ewv.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5eww.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ffv.b . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ffw.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5ffy.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5fg4.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5fg5.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5g4r.c . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5g4s.a . . * . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5mwg.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5mwh.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5mwz.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5myg.b . . . . . . . . . * . . . . . . . . . . . . . . * . . .
[1]5t4u.a . . . . . . . . . * . . . . . . . . . . . . . . . . . .
[1]5t4v.a . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4lc2.a is apo
4qyd.a:GGKGLGalyG
4qyl.a:SGRGalyQGGKA
4uye.a:9f9
5c7n.a:bmf
5c85.a:4yo
5c87.a:4ys
5c89.a:4yt
5d7x.a:xz8
5dy7.a:5gt
5dya.a:5gv
5dyc.a:5gu
5e3d.a:5jl
5e3g.a:5jq
5em3.a:5q0
5epr.a:5qy
5eps.a:5qx
5eq1.a:bea
5etb.a:5ro
5etd.a:5rn
5ev9.a:5sb
5eva.a:5s9
5ewc.a:5sj
5ewd.a:5sh
5ewh.a:5sg
5ewv.a:5sn
5eww.a:5sk
5ffv.b:STGGalyAPR
5ffw.a:SGRGalyGGalyGL
5ffy.a:5xd
5fg4.a:5xe
5fg5.a:5xf
5g4r.c:lf1
5g4s.a:8vi
5mwg.a:wgx
5mwh.a:uwx
5mwz.a:kgu
5myg.b:ls8
5t4u.a:12q
5t4v.a:n48
[1] 4lc2.a
-
0.2 0.2 0.1 0.1 0 0.1 0.1 0.1 0 0.3 0 0 0 0.1 0 0 0 0 0 0 0.1 0 0.1 0 0.1 0.2 0.2 0.2 0 0 0 0.1 0.1 0 0 0.2 0.2 0 0.1
[1] 4qyd.a -
0
0.6 0.1 0.2 0.1 0 0.1 0 0 0.2 0 0.1 0.1 0 0 0 0 0 0 0 0 0.1 0 0 0.1 0.1 0.2 0.2 0.4 0.1 0.1 0 0.2 0.2 0.6 0.4 0 0 0.2
[1] 4qyl.a - 0
0
0.2 0.2 0.1 0 0.1 0.1 0.1 0.2 0.1 0.2 0.2 0.1 0.1 0.1 0 0 0 0.1 0.1 0.2 0 0.1 0.1 0.1 0.1 0.2 0.2 0.1 0.2 0.1 0.1 0.2 0.6 0.4 0.1 0.1 0.1
[1] 4uye.a - 0.3 0.8
0
0.2 0 0.1 0 0.3 0 0.3 0 0 0 0.1 0 0.1 0.1 0.1 0.3 0 0.2 0.2 0.2 0 0.1 0.1 0.5 0.3 0 0 0 0 0.5 0.3 0.3 0.7 0.1 0 0
[1] 5c7n.a - 0.1 0.2 0
0
0 0.1 0.1 0.3 0 0.1 0 0 0 0.1 0 0 0.1 0.1 0.3 0 0.1 0.2 0.1 0 0.1 0 0.1 0.1 0 0 0 0.1 0.1 0.1 0.1 0.6 0.1 0 0
[1] 5c85.a - 0.1 0.3 0.3 0.1
0
0 0.2 0.3 0 0.2 0 0 0 0.2 0 0 0.1 0.1 0.3 0 0.1 0.2 0.1 0.1 0.2 0 0.2 0 0 0.1 0.1 0.5 0.2 0.3 0.5 1.0 0.2 0 0
[1] 5c87.a - 0.1 0.1 0.3 0.2 0
0
0 0.3 0 0 0 0 0 0.2 0 0 0 0.1 0.1 0 0.1 0.1 0 0 0 0 0 0.1 0 0 0.1 0.4 0 0 0.2 0.3 0 0 0
[1] 5c89.a - 0.3 0.3 0.7 0.3 0 0
0
0.1 0.1 0 0 0 0 0 0 0 0 0 0.1 0 0.4 0.5 0 0 0 0 0.2 0.2 0.3 0.3 0.5 0.7 0.3 0.3 0.6 0.7 0 0 0.3
[1] 5d7x.a - 0.2 0.2 0.3 0.3 0.1 0.2 0.1
0
0.1 0.3 0.1 0.2 0.1 0.1 0.1 0.1 0 0 0 0.2 0.2 0.2 0.2 0.1 0.1 0.1 0.3 0.2 0.2 0.2 0.4 0.5 0.8 0.3 0.3 0.9 0 0 0.2
[1] 5dy7.a - 0.1 0.3 1.1 0.5 0 0 0.1 0.3
0
0.1 0 0 0 0.2 0 0 0.1 0.1 0.3 0 1.0 0.9 0 0 0.1 0.1 0.3 0.1 0.4 0.4 0.9 1.2 0.9 0.6 1.0 1.2 0.3 0 0.4
[1] 5dya.a - 0.1 0.3 1.9 0.6 0 0 0.1 0.3 0.1
0
0 0 0 0.1 0 0 0.1 0.1 0.3 0 1.4 1.6 0 0 0.1 0 0.5 0.1 0.9 0.7 1.9 1.9 1.5 1.1 1.4 2.0 0.3 0 0.7
[1] 5dyc.a - 0.2 0.3 1.5 0.7 0 0 0.1 0.3 0 0.1
0
0.1 0 0.2 0 0 0.1 0.1 0.3 0.1 1.3 1.1 0 0 0.1 0.1 0.4 0.1 0.8 0.6 1.3 1.7 1.2 0.8 0.8 1.5 0.3 0.1 0.6
[1] 5e3d.a - 0.3 0.4 0.5 0.1 0 0.1 0.1 0.3 0 0.4 0.1
0
0 0.2 0 0 0 0.1 0.1 0 0.6 0.6 0.2 0 0.1 0 0.4 0.1 0.3 0.1 0.5 0.5 0.4 0.3 0.5 1.2 0 0 0.1
[1] 5e3g.a - 0 0.1 0.1 0.2 0 0 0 0.3 0 0.2 0 0
0
0.2 0 0 0 0.1 0.1 0 0 0.3 0 0 0 0.2 0 0.2 0 0 0.1 0.1 0.2 0 0.1 0.7 0.1 0 0
[1] 5em3.a - 0.3 0.3 0.4 0.3 0 0.2 0.1 0.1 0.1 0.1 0.1 0.2 0
0
0.1 0.1 0 0 0 0.2 0.5 0.4 0.2 0 0.1 0 0.2 0.3 0.3 0.2 0.5 0.5 0.5 0.4 0.5 0.7 0.1 0 0.2
[1] 5epr.a - 0.1 0.1 0.9 0.6 0 0 0 0.3 0.1 0.1 0.1 0 0 0.2
0
0 0 0.1 0.1 0 0.9 0.9 0 0 0.1 0 0 0.2 0.6 0.6 1.1 1.1 0.6 0.6 1.0 1.5 0.1 0 0.4
[1] 5eps.a - 0.3 0.3 1.4 0.7 0 0 0 0.3 0.2 0.8 0.4 0 0 0.1 0
0
0 0.1 0.1 0.2 1.3 1.4 0.1 0 0 0 0.5 0.2 0.9 0.9 1.6 1.6 1.7 1.4 1.1 2.5 0.2 0 0.7
[1] 5eq1.a - 0.4 0.3 0.7 0.5 0 0.1 0.1 0 0.2 0.2 0.1 0.2 0 0.1 0.1 0
0
0 0 0.3 0.5 0.6 0.1 0 0 0.1 0.2 0.3 0.4 0.3 0.5 0.9 0.8 0.3 0.6 1.1 0.1 0 0.2
[1] 5etb.a - 0.2 0.3 0.1 0.2 0 0.1 0 0.1 0 0.3 0.1 0.2 0 0.1 0.1 0 0
0
0 0.2 0.4 0.2 0.1 0 0 0.2 0.4 0.3 0.1 0.1 0.1 0.3 0.5 0.1 0.2 0.6 0 0 0.2
[1] 5etd.a - 0.2 0.3 0.5 0.3 0 0.2 0.1 0 0.1 0.3 0.1 0.2 0 0.1 0.1 0 0 0
0
0.2 0.5 0.5 0.1 0 0 0.2 0.2 0.3 0.1 0.1 0.5 0.5 0.8 0.3 0.5 1.0 0 0 0.3
[1] 5ev9.a - 0.1 0.1 0.5 0.1 0 0 0 0.3 0 0.2 0 0 0 0.1 0 0 0 0.1 0.1
0
0.4 0.6 0.1 0 0 0 0 0.1 0.1 0.1 0.4 0.5 0.4 0.3 0.5 0.9 0 0 0.1
[1] 5eva.a - 0.3 0.3 0.2 0.1 0 0 0 0.3 0 0.2 0 0 0 0.1 0 0 0 0.1 0.1 0.1
0
0 0 0 0 0 0.3 0.2 0 0 0.1 0.4 0.2 0.1 0 0.4 0 0 0
[1] 5ewc.a - 0.3 0.4 0 0.3 0 0 0.1 0.3 0 0 0 0.1 0 0.2 0 0 0.1 0.1 0.3 0 0.2
0
0 0 0.1 0.1 0.2 0.1 0 0 0 0 0.7 0.1 0.1 0.3 0 0.1 0
[1] 5ewd.a - 0.1 0.1 1.1 0.3 0 0 0.1 0.3 0.1 0.4 0 0 0 0.1 0 0 0 0.1 0.1 0 0.8 0.8
0
0 0.1 0 0.1 0.2 0.6 0.4 1.1 1.1 0.8 0.9 1.1 1.6 0.2 0 0.4
[1] 5ewh.a - 0.3 0.4 0.5 0.2 0 0 0.1 0.3 0 0.2 0 0 0 0.2 0 0 0 0.1 0.1 0 0.3 0.4 0
0
0 0 0.3 0.2 0.1 0.1 0.4 0.5 0.4 0.1 0.6 0.6 0.2 0 0.1
[1] 5ewv.a - 0.1 0.2 0.5 0.1 0 0 0 0.1 0 0 0 0 0 0.1 0 0 0 0 0.1 0 0.4 0.4 0 0
0
0 0.1 0.2 0.3 0.1 0.5 0.5 0.5 0.1 0.4 0.7 0 0 0.1
[1] 5eww.a - 0.1 0.1 0.4 0.1 0 0 0.1 0.3 0 0.2 0 0 0 0.1 0 0 0 0.1 0.1 0 0.1 0.2 0 0 0
0
0 0.1 0.1 0 0.3 0.4 0.2 0.1 0.3 0.6 0.2 0 0.1
[1] 5ffv.b - 0 0.2 0.1 0.2 0.1 0 0.1 0 0.1 0.2 0.1 0.2 0.2 0.1 0.1 0.1 0 0 0 0.1 0 0.1 0 0.1 0.1 0.1
0
0.1 0.1 0.1 0.1 0 0.3 0.3 0.2 0.4 0 0.1 0.1
[1] 5ffw.a - 0.1 0.3 0 0.3 0 0 0 0.3 0 0.3 0 0 0.1 0.3 0 0 0.1 0.1 0.1 0 0.2 0.2 0 0 0.1 0.2 0.1
0
0 0 0 0 0.6 0.1 0.4 0.7 0.1 0.1 0.1
[1] 5ffy.a - 0.1 0.7 0 0.2 0 0 0.1 0.3 0 0.2 0 0.1 0 0.1 0 0 0.1 0.1 0.3 0 0 0.1 0 0 0.1 0.1 0.1 0.2
0
0 0.1 0.2 0.7 0.1 0.2 0.7 0.1 0 0
[1] 5fg4.a - 0.1 0.6 0.2 0.3 0 0 0.1 0.3 0 0.3 0 0 0 0.1 0 0 0.1 0.1 0.3 0 0.2 0.2 0.1 0 0.1 0.2 0.3 0.4 0
0
0.3 0.6 1.0 0.1 0.4 0.7 0.1 0 0
[1] 5fg5.a - 0.4 0.5 0 0.7 0 0.2 0 0.3 0.1 0.3 0.1 0.2 0 0.1 0.1 0 0.1 0.1 0.1 0.2 0.2 0.2 0.3 0.1 0.1 0.1 0.6 0.3 0.1 0.1
0
0 0.5 0.2 0.2 0.4 0 0 0.2
[1] 5g4r.c - 0 0.7 0.1 0.2 0.1 0 0.1 0.3 0.1 0.5 0.1 0.3 0.2 0.2 0.1 0.1 0 0.1 0.1 0.1 0.1 0.2 0.1 0 0.1 0.2 0.6 0.4 0.2 0.1 0.1
0
0.4 0.1 0.2 0.5 0.1 0.1 0.1
[1] 5g4s.a - 0.3 0.3 0 0.4 0 0.2 0 0.1 0 0.3 0 0 0 0.1 0 0 0 0 0 0 0.1 0.3 0.2 0 0 0 0.4 0.1 0.1 0 0 0.1
0
0.5 0.4 0.5 0 0 0
[1] 5mwg.a - 0.3 0.7 0.4 0.3 0 0.1 0 0.1 0 0.2 0 0.2 0 0.1 0.1 0 0 0.1 0.1 0.2 0.2 0 0.1 0 0 0.3 0.2 0.2 0 0 0.4 0.6 0.8
0
0 0.3 0.1 0 0.1
[1] 5mwh.a - 0.3 0.6 0.1 0.3 0.1 0.2 0.1 0 0.1 0.2 0.1 0.2 0.1 0 0.1 0.1 0 0 0 0.2 0.1 0.1 0.1 0 0.1 0.1 0.2 0.7 0 0 0.1 0.2 0.5 0
0
0 0 0 0.2
[1] 5mwz.a - 0.3 0.3 0 0.2 0 0.2 0.1 0 0.1 0.1 0.1 0.2 0.1 0 0.1 0 0 0 0 0.2 0.1 0.1 0.1 0 0 0.1 0.2 0.2 0 0 0 0 0.3 0 0.1
0
0 0 0.1
[1] 5myg.b - 0.3 0.7 0.4 0.4 0 0.2 0.1 0 0.1 0.3 0.2 0.2 0.2 0 0.1 0 0 0 0 0.3 0.5 0.7 0.2 0 0.1 0.2 0.4 1.1 0.3 0.1 0.6 0.7 0.8 0.5 0.2 1.1
0
0 0.4
[1] 5t4u.a - 0.3 0.3 1.1 0.7 0 0.2 0.2 0 0.2 0.2 0.2 0.2 0.1 0.1 0.1 0 0 0 0 0.2 0.9 1.0 0.1 0 0 0.1 0.3 0.3 0.6 0.4 1.1 1.1 0.8 0.6 1.0 1.4 0.3
0
0.5
[1] 5t4v.a - 0.1 0.5 0.3 0 0 0 0 0.3 0 0.3 0 0 0 0.1 0 0 0.1 0.1 0.1 0 0.2 0.2 0.2 0 0.1 0 0.1 0.1 0 0 0.5 0.6 1.0 0.1 0.3 0.7 0.2 0
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4lc2.a
4qyd.a
4qyl.a
4uye.a
5c7n.a
5c85.a
5c87.a
5c89.a
5d7x.a
5dy7.a
5dya.a
5dyc.a
5e3d.a
5e3g.a
5em3.a
5epr.a
5eps.a
5eq1.a
5etb.a
5etd.a
5ev9.a
5eva.a
5ewc.a
5ewd.a
5ewh.a
5ewv.a
5eww.a
5ffv.b
5ffw.a
5ffy.a
5fg4.a
5fg5.a
5g4r.c
5g4s.a
5mwg.a
5mwh.a
5mwz.a
5myg.b
5t4u.a
5t4v.a
[1] 4lc2.a
0
.06 .03 .06 .03 .05 .03 .03 .05 .07 .09 .09 .05 .03 .03 .07 .11 .05 .04 .05 .05 .04 .04 .08 .04 .04 .03 .04 .05 .06 .08 .07 .07 .05 .05 .06 .03 .09 .06 .07
[1] 4qyd.a .06
0
.04 .05 .06 .08 .07 .07 .08 .12 .13 .14 .08 .05 .08 .10 .14 .09 .08 .08 .07 .07 .08 .10 .09 .08 .07 .03 .06 .05 .06 .10 .04 .08 .08 .05 .06 .07 .10 .07
[1] 4qyl.a .03 .04
0
.05 .03 .05 .05 .04 .05 .09 .10 .11 .04 .03 .05 .08 .11 .05 .04 .05 .05 .04 .05 .08 .05 .05 .05 .02 .05 .06 .06 .07 .05 .04 .08 .06 .04 .08 .07 .06
[1] 4uye.a .06 .05 .05
0
.05 .06 .07 .08 .06 .09 .11 .10 .05 .05 .07 .09 .11 .08 .05 .07 .05 .05 .05 .07 .06 .06 .07 .05 .03 .03 .03 .05 .03 .06 .06 .06 .06 .09 .09 .04
[1] 5c7n.a .03 .06 .03 .05
0
.03 .01 .03 .05 .07 .08 .09 .04 .02 .04 .05 .10 .05 .04 .05 .04 .02 .03 .07 .03 .04 .02 .04 .04 .05 .06 .06 .06 .05 .06 .06 .04 .10 .07 .06
[1] 5c85.a .05 .08 .05 .06 .03
0
.02 .05 .04 .06 .07 .09 .04 .03 .05 .06 .09 .06 .04 .06 .03 .02 .05 .05 .05 .05 .03 .05 .05 .05 .06 .08 .08 .05 .08 .09 .06 .09 .08 .06
[1] 5c87.a .03 .07 .05 .07 .01 .02
0
.03 .05 .05 .06 .08 .04 .03 .04 .05 .10 .05 .04 .05 .02 .02 .03 .06 .03 .03 .01 .05 .05 .05 .06 .07 .07 .06 .06 .07 .04 .09 .07 .06
[1] 5c89.a .03 .07 .04 .08 .03 .05 .03
0
.03 .05 .06 .07 .03 .04 .01 .04 .08 .02 .03 .02 .04 .03 .05 .05 .03 .02 .03 .05 .06 .06 .05 .08 .08 .06 .04 .07 .04 .07 .04 .05
[1] 5d7x.a .05 .08 .05 .06 .05 .04 .05 .03
0
.05 .07 .07 .03 .05 .03 .06 .08 .03 .02 .02 .03 .04 .04 .04 .04 .02 .05 .04 .05 .05 .04 .08 .08 .07 .04 .06 .04 .06 .04 .04
[1] 5dy7.a .07 .12 .09 .09 .07 .06 .05 .05 .05
0
.04 .02 .05 .07 .05 .02 .05 .04 .06 .05 .05 .06 .05 .02 .05 .04 .05 .09 .07 .06 .06 .09 .10 .11 .05 .09 .08 .09 .04 .06
[1] 5dya.a .09 .13 .10 .11 .08 .07 .06 .06 .07 .04
0
.03 .07 .09 .07 .03 .04 .06 .08 .07 .06 .07 .08 .05 .07 .07 .07 .10 .10 .10 .09 .11 .12 .12 .09 .12 .09 .11 .06 .10
[1] 5dyc.a .09 .14 .11 .10 .09 .09 .08 .07 .07 .02 .03
0
.07 .09 .06 .04 .03 .06 .08 .06 .07 .08 .06 .05 .06 .07 .08 .11 .08 .09 .08 .11 .11 .13 .07 .11 .09 .11 .05 .08
[1] 5e3d.a .05 .08 .04 .05 .04 .04 .04 .03 .03 .05 .07 .07
0
.04 .02 .05 .07 .03 .03 .03 .01 .03 .04 .04 .02 .03 .04 .05 .04 .04 .03 .06 .06 .06 .05 .07 .05 .06 .05 .03
[1] 5e3g.a .03 .05 .03 .05 .02 .03 .03 .04 .05 .07 .09 .09 .04
0
.04 .06 .09 .05 .05 .06 .03 .03 .04 .05 .04 .05 .02 .03 .04 .04 .06 .06 .05 .05 .07 .08 .04 .10 .07 .05
[1] 5em3.a .03 .08 .05 .07 .04 .05 .04 .01 .03 .05 .07 .06 .02 .04
0
.05 .07 .01 .03 .02 .03 .03 .04 .05 .01 .01 .03 .05 .06 .05 .04 .07 .07 .07 .03 .06 .04 .07 .03 .04
[1] 5epr.a .07 .10 .08 .09 .05 .06 .05 .04 .06 .02 .03 .04 .05 .06 .05
0
.05 .04 .06 .05 .05 .05 .06 .04 .05 .04 .05 .07 .07 .06 .06 .10 .09 .10 .07 .10 .07 .09 .04 .06
[1] 5eps.a .11 .14 .11 .11 .10 .09 .10 .08 .08 .05 .04 .03 .07 .09 .07 .05
0
.06 .09 .07 .07 .09 .09 .04 .08 .08 .09 .11 .09 .09 .07 .13 .11 .13 .09 .13 .11 .11 .06 .07
[1] 5eq1.a .05 .09 .05 .08 .05 .06 .05 .02 .03 .04 .06 .06 .03 .05 .01 .04 .06
0
.03 .01 .04 .04 .05 .03 .03 .03 .04 .05 .06 .06 .05 .09 .08 .08 .04 .08 .05 .06 .02 .05
[1] 5etb.a .04 .08 .04 .05 .04 .04 .04 .03 .02 .06 .08 .08 .03 .05 .03 .06 .09 .03
0
.03 .03 .02 .04 .05 .03 .02 .04 .04 .05 .04 .05 .06 .07 .06 .05 .06 .04 .08 .05 .05
[1] 5etd.a .05 .08 .05 .07 .05 .06 .05 .02 .02 .05 .07 .06 .03 .06 .02 .05 .07 .01 .03
0
.04 .04 .05 .04 .04 .02 .05 .05 .06 .05 .04 .08 .08 .08 .04 .06 .04 .05 .03 .05
[1] 5ev9.a .05 .07 .05 .05 .04 .03 .02 .04 .03 .05 .06 .07 .01 .03 .03 .05 .07 .04 .03 .04
0
.03 .03 .04 .02 .03 .03 .04 .04 .03 .04 .07 .06 .07 .05 .07 .04 .07 .05 .04
[1] 5eva.a .04 .07 .04 .05 .02 .02 .02 .03 .04 .06 .07 .08 .03 .03 .03 .05 .09 .04 .02 .04 .03
0
.04 .05 .03 .04 .02 .04 .05 .04 .05 .06 .06 .05 .06 .07 .05 .09 .06 .05
[1] 5ewc.a .04 .08 .05 .05 .03 .05 .03 .05 .04 .05 .08 .06 .04 .04 .04 .06 .09 .05 .04 .05 .03 .04
0
.06 .03 .04 .04 .05 .02 .04 .05 .05 .05 .08 .05 .05 .03 .09 .07 .05
[1] 5ewd.a .08 .10 .08 .07 .07 .05 .06 .05 .04 .02 .05 .05 .04 .05 .05 .04 .04 .03 .05 .04 .04 .05 .06
0
.05 .04 .05 .07 .07 .06 .05 .09 .09 .09 .07 .10 .08 .09 .04 .05
[1] 5ewh.a .04 .09 .05 .06 .03 .05 .03 .03 .04 .05 .07 .06 .02 .04 .01 .05 .08 .03 .03 .04 .02 .03 .03 .05
0
.03 .01 .05 .05 .05 .04 .06 .06 .08 .04 .07 .04 .08 .04 .04
[1] 5ewv.a .04 .08 .05 .06 .04 .05 .03 .02 .02 .04 .07 .07 .03 .05 .01 .04 .08 .03 .02 .02 .03 .04 .04 .04 .03
0
.03 .04 .05 .04 .04 .07 .08 .08 .03 .06 .04 .07 .04 .04
[1] 5eww.a .03 .07 .05 .07 .02 .03 .01 .03 .05 .05 .07 .08 .04 .02 .03 .05 .09 .04 .04 .05 .03 .02 .04 .05 .01 .03
0
.05 .06 .05 .06 .07 .07 .07 .06 .08 .05 .10 .05 .05
[1] 5ffv.b .04 .03 .02 .05 .04 .05 .05 .05 .04 .09 .10 .11 .05 .03 .05 .07 .11 .05 .04 .05 .04 .04 .05 .07 .05 .04 .05
0
.05 .04 .06 .07 .05 .05 .07 .06 .03 .08 .06 .06
[1] 5ffw.a .05 .06 .05 .03 .04 .05 .05 .06 .05 .07 .10 .08 .04 .04 .06 .07 .09 .06 .05 .06 .04 .05 .02 .07 .05 .05 .06 .05
0
.03 .03 .06 .04 .08 .05 .05 .05 .08 .08 .03
[1] 5ffy.a .06 .05 .06 .03 .05 .05 .05 .06 .05 .06 .10 .09 .04 .04 .05 .06 .09 .06 .04 .05 .03 .04 .04 .06 .05 .04 .05 .04 .03
0
.02 .07 .03 .08 .04 .06 .06 .08 .08 .02
[1] 5fg4.a .08 .06 .06 .03 .06 .06 .06 .05 .04 .06 .09 .08 .03 .06 .04 .06 .07 .05 .05 .04 .04 .05 .05 .05 .04 .04 .06 .06 .03 .02
0
.08 .04 .09 .03 .06 .07 .06 .07 0
[1] 5fg5.a .07 .10 .07 .05 .06 .08 .07 .08 .08 .09 .11 .11 .06 .06 .07 .10 .13 .09 .06 .08 .07 .06 .05 .09 .06 .07 .07 .07 .06 .07 .08
0
.08 .06 .09 .07 .06 .10 .10 .08
[1] 5g4r.c .07 .04 .05 .03 .06 .08 .07 .08 .08 .10 .12 .11 .06 .05 .07 .09 .11 .08 .07 .08 .06 .06 .05 .09 .06 .08 .07 .05 .04 .03 .04 .08
0
.08 .06 .05 .06 .08 .10 .04
[1] 5g4s.a .05 .08 .04 .06 .05 .05 .06 .06 .07 .11 .12 .13 .06 .05 .07 .10 .13 .08 .06 .08 .07 .05 .08 .09 .08 .08 .07 .05 .08 .08 .09 .06 .08
0
.10 .09 .06 .11 .10 .10
[1] 5mwg.a .05 .08 .08 .06 .06 .08 .06 .04 .04 .05 .09 .07 .05 .07 .03 .07 .09 .04 .05 .04 .05 .06 .05 .07 .04 .03 .06 .07 .05 .04 .03 .09 .06 .10
0
.05 .05 .07 .06 .03
[1] 5mwh.a .06 .05 .06 .06 .06 .09 .07 .07 .06 .09 .12 .11 .07 .08 .06 .10 .13 .08 .06 .06 .07 .07 .05 .10 .07 .06 .08 .06 .05 .06 .06 .07 .05 .09 .05
0
.04 .05 .09 .06
[1] 5mwz.a .03 .06 .04 .06 .04 .06 .04 .04 .04 .08 .09 .09 .05 .04 .04 .07 .11 .05 .04 .04 .04 .05 .03 .08 .04 .04 .05 .03 .05 .06 .07 .06 .06 .06 .05 .04
0
.08 .06 .08
[1] 5myg.b .09 .07 .08 .09 .10 .09 .09 .07 .06 .09 .11 .11 .06 .10 .07 .09 .11 .06 .08 .05 .07 .09 .09 .09 .08 .07 .10 .08 .08 .08 .06 .10 .08 .11 .07 .05 .08
0
.07 .06
[1] 5t4u.a .06 .10 .07 .09 .07 .08 .07 .04 .04 .04 .06 .05 .05 .07 .03 .04 .06 .02 .05 .03 .05 .06 .07 .04 .04 .04 .05 .06 .08 .08 .07 .10 .10 .10 .06 .09 .06 .07
0
.06
[1] 5t4v.a .07 .07 .06 .04 .06 .06 .06 .05 .04 .06 .10 .08 .03 .05 .04 .06 .07 .05 .05 .05 .04 .05 .05 .05 .04 .04 .05 .06 .03 .02 0 .08 .04 .10 .03 .06 .08 .06 .06
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4lc2.a
4qyd.a
4qyl.a
4uye.a
5c7n.a
5c85.a
5c87.a
5c89.a
5d7x.a
5dy7.a
5dya.a
5dyc.a
5e3d.a
5e3g.a
5em3.a
5epr.a
5eps.a
5eq1.a
5etb.a
5etd.a
5ev9.a
5eva.a
5ewc.a
5ewd.a
5ewh.a
5ewv.a
5eww.a
5ffv.b
5ffw.a
5ffy.a
5fg4.a
5fg5.a
5g4r.c
5g4s.a
5mwg.a
5mwh.a
5mwz.a
5myg.b
5t4u.a
5t4v.a
[1] 4lc2.a
0
0.6 0.4 0.7 0.5 0.7 0.3 0.3 0.4 0.7 0.7 0.7 0.4 0.3 0.4 0.5 0.5 0.4 0.3 0.4 0.5 0.4 0.6 0.6 0.5 0.3 0.4 0.7 0.6 0.6 0.7 0.6 0.6 0.6 0.5 0.4 0.7 0.8 0.4 0.7
[1] 4qyd.a 0.6
0
0.4 0.7 0.8 0.9 0.7 0.6 0.5 0.9 1.0 0.9 0.7 0.6 0.5 0.8 0.7 0.5 0.4 0.4 0.7 0.6 0.8 0.8 0.7 0.6 0.7 0.3 0.7 0.8 0.8 0.8 0.5 0.7 0.7 0.6 0.6 0.6 0.6 0.8
[1] 4qyl.a 0.4 0.4
0
0.7 0.6 0.8 0.5 0.5 0.5 0.8 0.8 0.8 0.5 0.4 0.5 0.6 0.5 0.4 0.4 0.4 0.5 0.4 0.7 0.7 0.5 0.5 0.5 0.5 0.6 0.7 0.7 0.6 0.5 0.6 0.5 0.4 0.7 0.7 0.5 0.7
[1] 4uye.a 0.7 0.7 0.7
0
0.4 0.5 0.5 0.5 0.7 0.5 0.6 0.5 0.4 0.6 0.7 0.5 0.5 0.5 0.6 0.7 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.9 0.3 0.3 0.3 0.3 0.4 0.8 0.4 0.5 1.0 0.7 0.5 0.3
[1] 5c7n.a 0.5 0.8 0.6 0.4
0
0.4 0.3 0.2 0.6 0.2 0.4 0.2 0.2 0.3 0.5 0.2 0.2 0.3 0.5 0.6 0.3 0.3 0.2 0.2 0.2 0.3 0.3 0.8 0.5 0.4 0.4 0.4 0.6 0.6 0.4 0.4 0.8 0.7 0.3 0.4
[1] 5c85.a 0.7 0.9 0.8 0.5 0.4
0
0.5 0.5 0.7 0.3 0.3 0.3 0.5 0.6 0.6 0.4 0.4 0.5 0.6 0.7 0.3 0.4 0.3 0.3 0.4 0.5 0.4 1.0 0.6 0.5 0.5 0.5 0.8 0.7 0.6 0.6 0.9 0.8 0.5 0.6
[1] 5c87.a 0.3 0.7 0.5 0.5 0.3 0.5
0
0.2 0.5 0.5 0.6 0.5 0.3 0.2 0.4 0.3 0.3 0.3 0.4 0.5 0.3 0.2 0.5 0.4 0.3 0.2 0.3 0.8 0.5 0.5 0.5 0.4 0.6 0.6 0.4 0.4 0.8 0.8 0.3 0.5
[1] 5c89.a 0.3 0.6 0.5 0.5 0.2 0.5 0.2
0
0.4 0.4 0.5 0.4 0.2 0.2 0.4 0.3 0.2 0.2 0.3 0.4 0.3 0.2 0.4 0.4 0.2 0.1 0.3 0.7 0.5 0.5 0.5 0.4 0.6 0.6 0.3 0.3 0.7 0.7 0.2 0.5
[1] 5d7x.a 0.4 0.5 0.5 0.7 0.6 0.7 0.5 0.4
0
0.7 0.7 0.7 0.5 0.5 0.2 0.5 0.5 0.3 0.2 0.2 0.5 0.4 0.6 0.6 0.5 0.4 0.5 0.5 0.7 0.7 0.7 0.7 0.6 0.6 0.6 0.5 0.5 0.6 0.4 0.8
[1] 5dy7.a 0.7 0.9 0.8 0.5 0.2 0.3 0.5 0.4 0.7
0
0.2 0.1 0.3 0.5 0.6 0.3 0.3 0.5 0.6 0.6 0.3 0.4 0.1 0.1 0.3 0.4 0.4 0.9 0.5 0.4 0.4 0.5 0.7 0.8 0.5 0.5 0.9 0.7 0.4 0.5
[1] 5dya.a 0.7 1.0 0.8 0.6 0.4 0.3 0.6 0.5 0.7 0.2
0
0.2 0.5 0.6 0.7 0.4 0.4 0.6 0.7 0.7 0.4 0.5 0.2 0.3 0.4 0.5 0.5 1.0 0.6 0.6 0.6 0.5 0.8 0.8 0.6 0.6 0.9 0.8 0.5 0.6
[1] 5dyc.a 0.7 0.9 0.8 0.5 0.2 0.3 0.5 0.4 0.7 0.1 0.2
0
0.3 0.5 0.6 0.3 0.3 0.5 0.6 0.7 0.3 0.4 0.1 0.1 0.3 0.4 0.4 0.9 0.5 0.4 0.4 0.4 0.7 0.8 0.5 0.5 0.9 0.7 0.4 0.5
[1] 5e3d.a 0.4 0.7 0.5 0.4 0.2 0.5 0.3 0.2 0.5 0.3 0.5 0.3
0
0.2 0.5 0.2 0.2 0.3 0.4 0.5 0.3 0.3 0.3 0.3 0.2 0.2 0.3 0.8 0.4 0.4 0.4 0.5 0.6 0.7 0.4 0.4 0.7 0.7 0.2 0.4
[1] 5e3g.a 0.3 0.6 0.4 0.6 0.3 0.6 0.2 0.2 0.5 0.5 0.6 0.5 0.2
0
0.4 0.3 0.3 0.3 0.4 0.5 0.4 0.3 0.5 0.4 0.2 0.2 0.3 0.7 0.5 0.5 0.6 0.5 0.6 0.6 0.4 0.3 0.7 0.7 0.2 0.6
[1] 5em3.a 0.4 0.5 0.5 0.7 0.5 0.6 0.4 0.4 0.2 0.6 0.7 0.6 0.5 0.4
0
0.5 0.4 0.2 0.2 0.1 0.4 0.4 0.6 0.6 0.4 0.3 0.4 0.5 0.6 0.6 0.7 0.6 0.6 0.6 0.5 0.4 0.4 0.6 0.4 0.7
[1] 5epr.a 0.5 0.8 0.6 0.5 0.2 0.4 0.3 0.3 0.5 0.3 0.4 0.3 0.2 0.3 0.5
0
0.2 0.3 0.5 0.5 0.3 0.4 0.2 0.2 0.2 0.3 0.4 0.8 0.5 0.4 0.4 0.5 0.7 0.7 0.4 0.4 0.8 0.7 0.3 0.5
[1] 5eps.a 0.5 0.7 0.5 0.5 0.2 0.4 0.3 0.2 0.5 0.3 0.4 0.3 0.2 0.3 0.4 0.2
0
0.3 0.4 0.5 0.3 0.2 0.2 0.2 0.1 0.2 0.3 0.8 0.5 0.4 0.5 0.4 0.6 0.6 0.4 0.4 0.7 0.7 0.2 0.5
[1] 5eq1.a 0.4 0.5 0.4 0.5 0.3 0.5 0.3 0.2 0.3 0.5 0.6 0.5 0.3 0.3 0.2 0.3 0.3
0
0.2 0.3 0.3 0.2 0.4 0.4 0.3 0.2 0.3 0.6 0.5 0.5 0.5 0.5 0.5 0.6 0.4 0.3 0.6 0.6 0.2 0.5
[1] 5etb.a 0.3 0.4 0.4 0.6 0.5 0.6 0.4 0.3 0.2 0.6 0.7 0.6 0.4 0.4 0.2 0.5 0.4 0.2
0
0.1 0.4 0.3 0.6 0.6 0.4 0.3 0.3 0.5 0.6 0.6 0.6 0.5 0.5 0.5 0.5 0.3 0.5 0.6 0.3 0.6
[1] 5etd.a 0.4 0.4 0.4 0.7 0.6 0.7 0.5 0.4 0.2 0.6 0.7 0.7 0.5 0.5 0.1 0.5 0.5 0.3 0.1
0
0.5 0.4 0.6 0.6 0.5 0.4 0.4 0.5 0.6 0.7 0.7 0.6 0.6 0.6 0.5 0.4 0.4 0.6 0.4 0.7
[1] 5ev9.a 0.5 0.7 0.5 0.4 0.3 0.3 0.3 0.3 0.5 0.3 0.4 0.3 0.3 0.4 0.4 0.3 0.3 0.3 0.4 0.5
0
0.2 0.3 0.3 0.3 0.2 0.2 0.8 0.4 0.4 0.4 0.4 0.6 0.6 0.4 0.4 0.8 0.7 0.3 0.4
[1] 5eva.a 0.4 0.6 0.4 0.5 0.3 0.4 0.2 0.2 0.4 0.4 0.5 0.4 0.3 0.3 0.4 0.4 0.2 0.2 0.3 0.4 0.2
0
0.4 0.4 0.2 0.2 0.2 0.7 0.5 0.5 0.5 0.4 0.5 0.5 0.4 0.4 0.7 0.7 0.2 0.5
[1] 5ewc.a 0.6 0.8 0.7 0.5 0.2 0.3 0.5 0.4 0.6 0.1 0.2 0.1 0.3 0.5 0.6 0.2 0.2 0.4 0.6 0.6 0.3 0.4
0
0.1 0.3 0.4 0.4 0.9 0.5 0.4 0.5 0.5 0.7 0.7 0.5 0.5 0.8 0.7 0.4 0.5
[1] 5ewd.a 0.6 0.8 0.7 0.5 0.2 0.3 0.4 0.4 0.6 0.1 0.3 0.1 0.3 0.4 0.6 0.2 0.2 0.4 0.6 0.6 0.3 0.4 0.1
0
0.2 0.4 0.4 0.9 0.5 0.4 0.5 0.5 0.7 0.7 0.5 0.5 0.9 0.7 0.4 0.5
[1] 5ewh.a 0.5 0.7 0.5 0.5 0.2 0.4 0.3 0.2 0.5 0.3 0.4 0.3 0.2 0.2 0.4 0.2 0.1 0.3 0.4 0.5 0.3 0.2 0.3 0.2
0
0.2 0.3 0.8 0.5 0.4 0.5 0.4 0.6 0.6 0.4 0.4 0.7 0.7 0.2 0.5
[1] 5ewv.a 0.3 0.6 0.5 0.5 0.3 0.5 0.2 0.1 0.4 0.4 0.5 0.4 0.2 0.2 0.3 0.3 0.2 0.2 0.3 0.4 0.2 0.2 0.4 0.4 0.2
0
0.3 0.7 0.5 0.4 0.5 0.4 0.5 0.6 0.3 0.3 0.7 0.7 0.2 0.5
[1] 5eww.a 0.4 0.7 0.5 0.5 0.3 0.4 0.3 0.3 0.5 0.4 0.5 0.4 0.3 0.3 0.4 0.4 0.3 0.3 0.3 0.4 0.2 0.2 0.4 0.4 0.3 0.3
0
0.7 0.5 0.5 0.5 0.4 0.6 0.5 0.5 0.4 0.7 0.7 0.3 0.6
[1] 5ffv.b 0.7 0.3 0.5 0.9 0.8 1.0 0.8 0.7 0.5 0.9 1.0 0.9 0.8 0.7 0.5 0.8 0.8 0.6 0.5 0.5 0.8 0.7 0.9 0.9 0.8 0.7 0.7
0
0.8 0.9 0.9 0.9 0.7 0.8 0.8 0.6 0.5 0.7 0.7 0.9
[1] 5ffw.a 0.6 0.7 0.6 0.3 0.5 0.6 0.5 0.5 0.7 0.5 0.6 0.5 0.4 0.5 0.6 0.5 0.5 0.5 0.6 0.6 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.8
0
0.2 0.2 0.4 0.4 0.8 0.3 0.5 0.9 0.7 0.5 0.2
[1] 5ffy.a 0.6 0.8 0.7 0.3 0.4 0.5 0.5 0.5 0.7 0.4 0.6 0.4 0.4 0.5 0.6 0.4 0.4 0.5 0.6 0.7 0.4 0.5 0.4 0.4 0.4 0.4 0.5 0.9 0.2
0
0.1 0.4 0.5 0.8 0.3 0.4 0.9 0.6 0.5 0.2
[1] 5fg4.a 0.7 0.8 0.7 0.3 0.4 0.5 0.5 0.5 0.7 0.4 0.6 0.4 0.4 0.6 0.7 0.4 0.5 0.5 0.6 0.7 0.4 0.5 0.5 0.5 0.5 0.5 0.5 0.9 0.2 0.1
0
0.4 0.5 0.9 0.3 0.5 0.9 0.7 0.5 0.2
[1] 5fg5.a 0.6 0.8 0.6 0.3 0.4 0.5 0.4 0.4 0.7 0.5 0.5 0.4 0.5 0.5 0.6 0.5 0.4 0.5 0.5 0.6 0.4 0.4 0.5 0.5 0.4 0.4 0.4 0.9 0.4 0.4 0.4
0
0.5 0.6 0.4 0.5 0.9 0.8 0.5 0.4
[1] 5g4r.c 0.6 0.5 0.5 0.4 0.6 0.8 0.6 0.6 0.6 0.7 0.8 0.7 0.6 0.6 0.6 0.7 0.6 0.5 0.5 0.6 0.6 0.5 0.7 0.7 0.6 0.5 0.6 0.7 0.4 0.5 0.5 0.5
0
0.8 0.4 0.5 0.8 0.6 0.5 0.4
[1] 5g4s.a 0.6 0.7 0.6 0.8 0.6 0.7 0.6 0.6 0.6 0.8 0.8 0.8 0.7 0.6 0.6 0.7 0.6 0.6 0.5 0.6 0.6 0.5 0.7 0.7 0.6 0.6 0.5 0.8 0.8 0.8 0.9 0.6 0.8
0
0.8 0.7 0.8 0.9 0.6 0.9
[1] 5mwg.a 0.5 0.7 0.5 0.4 0.4 0.6 0.4 0.3 0.6 0.5 0.6 0.5 0.4 0.4 0.5 0.4 0.4 0.4 0.5 0.5 0.4 0.4 0.5 0.5 0.4 0.3 0.5 0.8 0.3 0.3 0.3 0.4 0.4 0.8
0
0.3 0.8 0.6 0.4 0.3
[1] 5mwh.a 0.4 0.6 0.4 0.5 0.4 0.6 0.4 0.3 0.5 0.5 0.6 0.5 0.4 0.3 0.4 0.4 0.4 0.3 0.3 0.4 0.4 0.4 0.5 0.5 0.4 0.3 0.4 0.6 0.5 0.4 0.5 0.5 0.5 0.7 0.3
0
0.6 0.6 0.3 0.5
[1] 5mwz.a 0.7 0.6 0.7 1.0 0.8 0.9 0.8 0.7 0.5 0.9 0.9 0.9 0.7 0.7 0.4 0.8 0.7 0.6 0.5 0.4 0.8 0.7 0.8 0.9 0.7 0.7 0.7 0.5 0.9 0.9 0.9 0.9 0.8 0.8 0.8 0.6
0
0.7 0.7 0.9
[1] 5myg.b 0.8 0.6 0.7 0.7 0.7 0.8 0.8 0.7 0.6 0.7 0.8 0.7 0.7 0.7 0.6 0.7 0.7 0.6 0.6 0.6 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.6 0.7 0.8 0.6 0.9 0.6 0.6 0.7
0
0.7 0.7
[1] 5t4u.a 0.4 0.6 0.5 0.5 0.3 0.5 0.3 0.2 0.4 0.4 0.5 0.4 0.2 0.2 0.4 0.3 0.2 0.2 0.3 0.4 0.3 0.2 0.4 0.4 0.2 0.2 0.3 0.7 0.5 0.5 0.5 0.5 0.5 0.6 0.4 0.3 0.7 0.7
0
0.5
[1] 5t4v.a 0.7 0.8 0.7 0.3 0.4 0.6 0.5 0.5 0.8 0.5 0.6 0.5 0.4 0.6 0.7 0.5 0.5 0.5 0.6 0.7 0.4 0.5 0.5 0.5 0.5 0.5 0.6 0.9 0.2 0.2 0.2 0.4 0.4 0.9 0.3 0.5 0.9 0.7 0.5
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4lc2.a
4qyd.a
4qyl.a
4uye.a
5c7n.a
5c85.a
5c87.a
5c89.a
5d7x.a
5dy7.a
5dya.a
5dyc.a
5e3d.a
5e3g.a
5em3.a
5epr.a
5eps.a
5eq1.a
5etb.a
5etd.a
5ev9.a
5eva.a
5ewc.a
5ewd.a
5ewh.a
5ewv.a
5eww.a
5ffv.b
5ffw.a
5ffy.a
5fg4.a
5fg5.a
5g4r.c
5g4s.a
5mwg.a
5mwh.a
5mwz.a
5myg.b
5t4u.a
5t4v.a
[1] 4lc2.a
0
1.5 1.2 1.6 0.9 0.8 1.0 1.1 1.2 1.0 1.1 1.0 0.8 0.8 0.6 0.9 0.9 0.7 0.6 0.6 1.0 0.6 1.0 1.0 0.8 0.6 0.6 1.4 1.6 1.5 1.5 1.5 1.6 1.1 1.5 1.4 1.2 1.6 1.2 1.5
[1] 4qyd.a 1.5
0
0.7 1.0 1.5 1.6 1.2 1.3 1.3 1.7 1.7 1.7 1.6 1.6 1.5 1.6 1.6 1.4 1.4 1.5 1.2 1.4 1.6 1.6 1.6 1.5 1.5 0.7 1.0 1.0 1.0 1.1 0.8 1.6 1.1 1.0 1.3 0.9 1.4 1.0
[1] 4qyl.a 1.2 0.7
0
1.1 1.3 1.4 1.0 1.2 1.2 1.5 1.5 1.4 1.3 1.3 1.3 1.4 1.4 1.2 1.2 1.3 1.1 1.2 1.4 1.4 1.4 1.2 1.2 0.7 1.0 1.0 1.0 1.1 1.0 1.5 1.1 1.0 1.2 1.1 1.3 1.0
[1] 4uye.a 1.6 1.0 1.1
0
1.4 1.5 1.2 1.4 1.5 1.6 1.7 1.6 1.6 1.6 1.6 1.6 1.6 1.4 1.6 1.6 1.2 1.5 1.5 1.6 1.6 1.4 1.5 1.1 0.7 0.7 0.7 0.7 0.7 1.7 0.9 0.9 1.5 1.0 1.4 0.7
[1] 5c7n.a 0.9 1.5 1.3 1.4
0
0.7 0.9 0.7 0.9 0.6 0.7 0.6 0.5 0.6 0.9 0.6 0.6 0.8 0.9 0.9 0.9 0.8 0.5 0.6 0.5 0.8 0.8 1.4 1.4 1.4 1.4 1.4 1.5 1.1 1.4 1.3 1.1 1.5 0.8 1.4
[1] 5c85.a 0.8 1.6 1.4 1.5 0.7
0
0.9 1.0 1.1 0.8 0.8 0.8 0.8 0.9 0.8 0.8 0.8 0.7 0.7 0.8 0.8 0.6 0.7 0.7 0.8 0.7 0.6 1.5 1.5 1.4 1.4 1.4 1.6 1.1 1.5 1.4 1.2 1.5 1.1 1.5
[1] 5c87.a 1.0 1.2 1.0 1.2 0.9 0.9
0
0.7 0.8 1.2 1.2 1.1 1.0 1.0 0.9 1.0 1.1 0.7 0.9 1.0 0.6 0.8 1.0 1.1 0.9 0.7 0.8 1.2 1.1 1.1 1.2 1.2 1.3 1.1 1.1 1.0 0.9 1.3 0.8 1.2
[1] 5c89.a 1.1 1.3 1.2 1.4 0.7 1.0 0.7
0
0.6 0.9 0.9 0.9 0.8 0.8 1.0 0.7 0.8 0.8 1.0 1.0 0.8 1.0 0.8 0.8 0.7 0.9 1.0 1.3 1.3 1.2 1.3 1.4 1.4 1.3 1.2 1.1 0.9 1.3 0.6 1.3
[1] 5d7x.a 1.2 1.3 1.2 1.5 0.9 1.1 0.8 0.6
0
1.1 1.0 1.1 1.0 0.9 1.0 0.9 0.9 0.9 1.0 1.0 0.9 1.1 0.9 0.9 0.8 1.0 1.1 1.2 1.4 1.4 1.4 1.5 1.5 1.3 1.4 1.2 0.8 1.3 0.6 1.4
[1] 5dy7.a 1.0 1.7 1.5 1.6 0.6 0.8 1.2 0.9 1.1
0
0.5 0.2 0.5 0.7 0.9 0.5 0.6 1.0 1.0 1.0 1.1 0.9 0.5 0.4 0.6 0.9 0.8 1.5 1.6 1.5 1.5 1.6 1.7 1.4 1.6 1.5 1.4 1.6 1.0 1.5
[1] 5dya.a 1.1 1.7 1.5 1.7 0.7 0.8 1.2 0.9 1.0 0.5
0
0.4 0.7 0.8 1.0 0.6 0.6 1.0 1.1 1.1 1.1 0.9 0.5 0.4 0.6 0.9 0.9 1.6 1.6 1.5 1.6 1.6 1.8 1.4 1.6 1.5 1.4 1.6 1.0 1.6
[1] 5dyc.a 1.0 1.7 1.4 1.6 0.6 0.8 1.1 0.9 1.1 0.2 0.4
0
0.5 0.7 0.9 0.5 0.5 0.9 1.0 1.0 1.1 0.9 0.5 0.3 0.5 0.9 0.9 1.5 1.6 1.4 1.5 1.6 1.7 1.4 1.5 1.4 1.4 1.5 1.0 1.5
[1] 5e3d.a 0.8 1.6 1.3 1.6 0.5 0.8 1.0 0.8 1.0 0.5 0.7 0.5
0
0.5 0.8 0.4 0.5 0.8 0.8 0.9 1.1 0.8 0.6 0.5 0.4 0.8 0.8 1.5 1.5 1.4 1.5 1.6 1.6 1.3 1.5 1.4 1.3 1.5 0.9 1.5
[1] 5e3g.a 0.8 1.6 1.3 1.6 0.6 0.9 1.0 0.8 0.9 0.7 0.8 0.7 0.5
0
0.9 0.6 0.6 0.9 0.9 0.9 1.1 0.8 0.7 0.6 0.5 0.8 0.8 1.5 1.6 1.5 1.6 1.6 1.6 1.2 1.5 1.4 1.2 1.6 0.9 1.6
[1] 5em3.a 0.6 1.5 1.3 1.6 0.9 0.8 0.9 1.0 1.0 0.9 1.0 0.9 0.8 0.9
0
0.8 0.8 0.6 0.4 0.4 0.9 0.6 0.9 0.9 0.8 0.5 0.6 1.3 1.6 1.4 1.5 1.5 1.6 1.1 1.5 1.3 1.0 1.5 1.0 1.5
[1] 5epr.a 0.9 1.6 1.4 1.6 0.6 0.8 1.0 0.7 0.9 0.5 0.6 0.5 0.4 0.6 0.8
0
0.5 0.7 0.8 0.8 1.0 0.8 0.5 0.4 0.5 0.8 0.9 1.5 1.5 1.4 1.5 1.6 1.7 1.3 1.5 1.4 1.2 1.5 0.9 1.5
[1] 5eps.a 0.9 1.6 1.4 1.6 0.6 0.8 1.1 0.8 0.9 0.6 0.6 0.5 0.5 0.6 0.8 0.5
0
0.8 0.8 0.8 1.0 0.8 0.6 0.4 0.4 0.8 0.8 1.5 1.6 1.5 1.6 1.6 1.7 1.3 1.5 1.4 1.2 1.6 0.9 1.6
[1] 5eq1.a 0.7 1.4 1.2 1.4 0.8 0.7 0.7 0.8 0.9 1.0 1.0 0.9 0.8 0.9 0.6 0.7 0.8
0
0.4 0.5 0.6 0.5 0.9 0.9 0.8 0.4 0.6 1.3 1.4 1.3 1.4 1.4 1.5 1.0 1.3 1.3 1.0 1.4 0.9 1.4
[1] 5etb.a 0.6 1.4 1.2 1.6 0.9 0.7 0.9 1.0 1.0 1.0 1.1 1.0 0.8 0.9 0.4 0.8 0.8 0.4
0
0.3 0.8 0.4 0.9 0.9 0.8 0.5 0.5 1.3 1.5 1.5 1.5 1.6 1.6 1.0 1.5 1.4 1.0 1.5 1.1 1.5
[1] 5etd.a 0.6 1.5 1.3 1.6 0.9 0.8 1.0 1.0 1.0 1.0 1.1 1.0 0.9 0.9 0.4 0.8 0.8 0.5 0.3
0
0.9 0.6 1.0 0.9 0.8 0.6 0.7 1.4 1.6 1.5 1.6 1.6 1.6 1.1 1.5 1.4 1.0 1.5 1.1 1.6
[1] 5ev9.a 1.0 1.2 1.1 1.2 0.9 0.8 0.6 0.8 0.9 1.1 1.1 1.1 1.1 1.1 0.9 1.0 1.0 0.6 0.8 0.9
0
0.8 1.0 1.0 1.0 0.7 0.8 1.2 1.1 1.0 1.1 1.2 1.2 1.1 1.1 1.1 1.0 1.2 0.8 1.1
[1] 5eva.a 0.6 1.4 1.2 1.5 0.8 0.6 0.8 1.0 1.1 0.9 0.9 0.9 0.8 0.8 0.6 0.8 0.8 0.5 0.4 0.6 0.8
0
0.8 0.8 0.7 0.4 0.5 1.4 1.4 1.4 1.4 1.5 1.5 1.0 1.4 1.3 1.1 1.5 1.1 1.4
[1] 5ewc.a 1.0 1.6 1.4 1.5 0.5 0.7 1.0 0.8 0.9 0.5 0.5 0.5 0.6 0.7 0.9 0.5 0.6 0.9 0.9 1.0 1.0 0.8
0
0.5 0.5 0.8 0.9 1.5 1.5 1.4 1.5 1.5 1.6 1.2 1.5 1.4 1.1 1.5 0.9 1.5
[1] 5ewd.a 1.0 1.6 1.4 1.6 0.6 0.7 1.1 0.8 0.9 0.4 0.4 0.3 0.5 0.6 0.9 0.4 0.4 0.9 0.9 0.9 1.0 0.8 0.5
0
0.4 0.8 0.8 1.6 1.6 1.4 1.5 1.6 1.7 1.3 1.5 1.4 1.3 1.5 0.9 1.5
[1] 5ewh.a 0.8 1.6 1.4 1.6 0.5 0.8 0.9 0.7 0.8 0.6 0.6 0.5 0.4 0.5 0.8 0.5 0.4 0.8 0.8 0.8 1.0 0.7 0.5 0.4
0
0.7 0.7 1.5 1.6 1.4 1.5 1.6 1.6 1.2 1.5 1.4 1.1 1.5 0.8 1.5
[1] 5ewv.a 0.6 1.5 1.2 1.4 0.8 0.7 0.7 0.9 1.0 0.9 0.9 0.9 0.8 0.8 0.5 0.8 0.8 0.4 0.5 0.6 0.7 0.4 0.8 0.8 0.7
0
0.5 1.4 1.4 1.3 1.4 1.4 1.5 1.0 1.4 1.3 1.1 1.4 0.9 1.4
[1] 5eww.a 0.6 1.5 1.2 1.5 0.8 0.6 0.8 1.0 1.1 0.8 0.9 0.9 0.8 0.8 0.6 0.9 0.8 0.6 0.5 0.7 0.8 0.5 0.9 0.8 0.7 0.5
0
1.3 1.5 1.4 1.5 1.4 1.5 1.0 1.4 1.3 1.1 1.5 1.0 1.5
[1] 5ffv.b 1.4 0.7 0.7 1.1 1.4 1.5 1.2 1.3 1.2 1.5 1.6 1.5 1.5 1.5 1.3 1.5 1.5 1.3 1.3 1.4 1.2 1.4 1.5 1.6 1.5 1.4 1.3
0
1.1 1.1 1.1 1.2 0.9 1.6 1.2 1.0 1.2 1.0 1.4 1.1
[1] 5ffw.a 1.6 1.0 1.0 0.7 1.4 1.5 1.1 1.3 1.4 1.6 1.6 1.6 1.5 1.6 1.6 1.5 1.6 1.4 1.5 1.6 1.1 1.4 1.5 1.6 1.6 1.4 1.5 1.1
0
0.7 0.6 0.9 0.7 1.7 0.8 0.8 1.4 0.9 1.4 0.6
[1] 5ffy.a 1.5 1.0 1.0 0.7 1.4 1.4 1.1 1.2 1.4 1.5 1.5 1.4 1.4 1.5 1.4 1.4 1.5 1.3 1.5 1.5 1.0 1.4 1.4 1.4 1.4 1.3 1.4 1.1 0.7
0
0.4 0.9 0.7 1.7 0.7 0.6 1.3 0.9 1.3 0.5
[1] 5fg4.a 1.5 1.0 1.0 0.7 1.4 1.4 1.2 1.3 1.4 1.5 1.6 1.5 1.5 1.6 1.5 1.5 1.6 1.4 1.5 1.6 1.1 1.4 1.5 1.5 1.5 1.4 1.5 1.1 0.6 0.4
0
0.8 0.7 1.8 0.7 0.7 1.4 0.9 1.4 0.3
[1] 5fg5.a 1.5 1.1 1.1 0.7 1.4 1.4 1.2 1.4 1.5 1.6 1.6 1.6 1.6 1.6 1.5 1.6 1.6 1.4 1.6 1.6 1.2 1.5 1.5 1.6 1.6 1.4 1.4 1.2 0.9 0.9 0.8
0
0.9 1.7 0.9 0.8 1.5 1.2 1.5 0.8
[1] 5g4r.c 1.6 0.8 1.0 0.7 1.5 1.6 1.3 1.4 1.5 1.7 1.8 1.7 1.6 1.6 1.6 1.7 1.7 1.5 1.6 1.6 1.2 1.5 1.6 1.7 1.6 1.5 1.5 0.9 0.7 0.7 0.7 0.9
0
1.7 0.9 0.8 1.4 1.0 1.5 0.7
[1] 5g4s.a 1.1 1.6 1.5 1.7 1.1 1.1 1.1 1.3 1.3 1.4 1.4 1.4 1.3 1.2 1.1 1.3 1.3 1.0 1.0 1.1 1.1 1.0 1.2 1.3 1.2 1.0 1.0 1.6 1.7 1.7 1.8 1.7 1.7
0
1.8 1.6 1.3 1.8 1.3 1.8
[1] 5mwg.a 1.5 1.1 1.1 0.9 1.4 1.5 1.1 1.2 1.4 1.6 1.6 1.5 1.5 1.5 1.5 1.5 1.5 1.3 1.5 1.5 1.1 1.4 1.5 1.5 1.5 1.4 1.4 1.2 0.8 0.7 0.7 0.9 0.9 1.8
0
0.7 1.3 1.0 1.3 0.7
[1] 5mwh.a 1.4 1.0 1.0 0.9 1.3 1.4 1.0 1.1 1.2 1.5 1.5 1.4 1.4 1.4 1.3 1.4 1.4 1.3 1.4 1.4 1.1 1.3 1.4 1.4 1.4 1.3 1.3 1.0 0.8 0.6 0.7 0.8 0.8 1.6 0.7
0
1.1 0.8 1.2 0.7
[1] 5mwz.a 1.2 1.3 1.2 1.5 1.1 1.2 0.9 0.9 0.8 1.4 1.4 1.4 1.3 1.2 1.0 1.2 1.2 1.0 1.0 1.0 1.0 1.1 1.1 1.3 1.1 1.1 1.1 1.2 1.4 1.3 1.4 1.5 1.4 1.3 1.3 1.1
0
1.3 1.0 1.4
[1] 5myg.b 1.6 0.9 1.1 1.0 1.5 1.5 1.3 1.3 1.3 1.6 1.6 1.5 1.5 1.6 1.5 1.5 1.6 1.4 1.5 1.5 1.2 1.5 1.5 1.5 1.5 1.4 1.5 1.0 0.9 0.9 0.9 1.2 1.0 1.8 1.0 0.8 1.3
0
1.3 0.9
[1] 5t4u.a 1.2 1.4 1.3 1.4 0.8 1.1 0.8 0.6 0.6 1.0 1.0 1.0 0.9 0.9 1.0 0.9 0.9 0.9 1.1 1.1 0.8 1.1 0.9 0.9 0.8 0.9 1.0 1.4 1.4 1.3 1.4 1.5 1.5 1.3 1.3 1.2 1.0 1.3
0
1.4
[1] 5t4v.a 1.5 1.0 1.0 0.7 1.4 1.5 1.2 1.3 1.4 1.5 1.6 1.5 1.5 1.6 1.5 1.5 1.6 1.4 1.5 1.6 1.1 1.4 1.5 1.5 1.5 1.4 1.5 1.1 0.6 0.5 0.3 0.8 0.7 1.8 0.7 0.7 1.4 0.9 1.4
0
[Binding site full-atom RMSD matrix]







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