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BRI1_ARATH_26_786

Protein BRASSINOSTEROID INSENSITIVE 1 [Protein kinase superfamily. Ser/Thr protein kinase family]

Composition of the binding site

Protein chains monomer
A1 (BRI1_ARATH):540, 563, 564, 590, 591, 597, 599, 601, 615, 641, 642, 646:648, 657, 681, 682, 705, 706, 729540, 563, 564, 590, 591, 597, 599, 601, 615, 641, 642, 646:648, 657, 681, 682, 705, 706, 729

Full PDB list

3rgx, 3rgz, 3riz, 3rj0, 4lsa, 4lsx (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
I
5
4
0
I
5
6
3
W
5
6
4
Y
5
9
7
Y
5
9
9
K
6
0
1
L
6
1
5
Y
6
4
2
T
6
4
6
S
6
4
7
P
6
4
8
M
6
5
7
F
6
8
1
I
6
8
2
N
7
0
5
T
7
2
9
[1]3rgx.a none . . . . . . . . - . . . . . . .
[1]4lsa.a bld34 . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

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PDB.ch
A1
I
5
4
0
I
5
6
3
W
5
6
4
N
5
9
0
F
5
9
1
Y
5
9
7
Y
5
9
9
K
6
0
1
L
6
1
5
V
6
4
1
Y
6
4
2
T
6
4
6
S
6
4
7
P
6
4
8
M
6
5
7
F
6
8
1
I
6
8
2
N
7
0
5
I
7
0
6
T
7
2
9
[1]3rgx.a . . . . . . . . . . . - . . . . . . . .
[1]4lsa.a . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
3rgx.a is apo
4lsa.a:bld
[1] 3rgx.a
-
1.0
[1] 4lsa.a -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
3rgx.a
4lsa.a
[1] 3rgx.a
0
.05
[1] 4lsa.a .05
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3rgx.a
4lsa.a
[1] 3rgx.a
0
2.7
[1] 4lsa.a 2.7
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 1.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3rgx.a
4lsa.a
[1] 3rgx.a
0
3.2
[1] 4lsa.a 3.2
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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