If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

BLA1_KLEPN_19_286_tazobactam

Beta-lactamase SHV-1 [Class-A beta-lactamase family]

Composition of the binding site

Protein chains homodimer
A1 (BLA1_KLEPN):100:103, 106, 212100:103, 106, 212
A2 (BLA1_KLEPN):34:36, 268, 27234:36, 268, 272

Full PDB list

1n9b, 1ong, 1q2p, 1rcj, 1shv, 1tdg, 1tdl, 1vm1, 2a3u, 2a49, 2g2u, 2g2w, 2h0t, 2h0y, 2h10, 2h5s, 2zd8, 3c4o, 3c4p, 3d4f, 3mke, 3mkf, 3mxr, 3mxs, 3n4i, 3oph, 3opl, 3opp, 3opr, 3v50, 3v5m, 4fcf, 4fd8, 4fh2, 4fh4, 4gd6, 4gd8, 4gdb, 4jpm, 4mbf, 4mbh, 4mbk, 4r3b, 4zam, 5ee8 (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 A2
D
1
0
0
Y
1
0
1
S
1
0
2
P
1
0
3
E
1
0
6
Q
3
5
E
2
6
8
[1]2g2u.a AY-E26 . . . . . - -
[1]2g2w.a YA-E26 K . . . . - -
[1]3c4o.a AY-M25 . . . . . - -
[1]3n4i.a YAY-E38 E . . . . - -
[2]1vm1.a taz20 . . . . . . .
[2]3d4f.a none . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 A2
D
1
0
0
Y
1
0
1
S
1
0
2
P
1
0
3
E
1
0
6
V
2
1
2
S
3
4
Q
3
5
L
3
6
E
2
6
8
Q
2
7
2
[1]2g2u.a . . . . . . - - - - -
[1]2g2w.a K . . . . . - - - - -
[1]3c4o.a . . . . . . - - - - -
[1]3n4i.a E . . . . . - - - - -
[2]1vm1.a . . . . . . . . . * .
[2]3d4f.a . . . . . . . . . * .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
2g2u.a:AY-E
2g2w.a:YA-E
3c4o.a:AY-M
3n4i.a:YAY-E
1vm1.a:taz
3d4f.a is apo
[1] 2g2u.a
0
0 0 0 0 -
[1] 2g2w.a 0
0
0.2 0 0 -
[1] 3c4o.a 0.3 0.2
0
0.3 0.1 -
[1] 3n4i.a 0 0 0.1
0
0 -
[2] 1vm1.a 2.8 1.9 2.8 3.0
0.1
-
[2] 3d4f.a 2.2 1.9 0.8 2.4 0.8
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (2 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
2g2u.a
2g2w.a
3c4o.a
3n4i.a
1vm1.a
3d4f.a
[1] 2g2u.a
0
.02 .03 .01 .37 .25
[1] 2g2w.a .02
0
.04 .01 .35 .23
[1] 3c4o.a .03 .04
0
.03 .36 .24
[1] 3n4i.a .01 .01 .03
0
.36 .24
[2] 1vm1.a .37 .35 .36 .36
0
.18
[2] 3d4f.a .25 .23 .24 .24 .18
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.6 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2g2u.a
2g2w.a
3c4o.a
3n4i.a
1vm1.a
3d4f.a
[1] 2g2u.a
0
0.4 0.3 0.2 0.7 1.0
[1] 2g2w.a 0.4
0
0.5 0.3 0.5 0.8
[1] 3c4o.a 0.3 0.5
0
0.3 0.7 0.9
[1] 3n4i.a 0.2 0.3 0.3
0
0.6 0.9
[2] 1vm1.a 0.7 0.5 0.7 0.6
0
0.5
[2] 3d4f.a 1.0 0.8 0.9 0.9 0.5
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
2g2u.a
2g2w.a
3c4o.a
3n4i.a
1vm1.a
3d4f.a
[1] 2g2u.a
0
1.9 1.3 0.4 2.3 2.3
[1] 2g2w.a 1.9
0
2.1 1.9 1.2 1.2
[1] 3c4o.a 1.3 2.1
0
1.1 2.0 2.1
[1] 3n4i.a 0.4 1.9 1.1
0
2.2 2.2
[2] 1vm1.a 2.3 1.2 2.0 2.2
0
0.9
[2] 3d4f.a 2.3 1.2 2.1 2.2 0.9
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...