BIOD_HELPY_1_218

ATP-dependent dethiobiotin synthetase BioD [Dethiobiotin synthetase family]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains homodimer
 • A1 (BIOD_HELPY):9,39,79,80,1239,39,79,80,123
 • A2 (BIOD_HELPY):150:154150:154
Cofactors (cF):gdp/gtp
Metals (Me):Mg

Full PDB list

2qmo,3mle,3qxc,3qxh,3qxj,3qxs,3qxx,3qy0 (redundant pocketome entry)

Contact map

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ligand
A1 A2 cF Me
T
9
T
3
9
S
7
9
A
8
0
V
1
2
3
L
1
5
0
G
1
5
1
L
1
5
2
I
1
5
3
N
1
5
4
[1]3qxx.a 8ac 11 . . . . . . . . . . gdp Mg
[1]3qxj.a none . . . . . . . . . . gtp Mg

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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