BIOD1_ECOLI_2_225

ATP-dependent dethiobiotin synthetase BioD 1 [Dethiobiotin synthetase family]

ActiveICM:

L C E

Composition of the binding pockets

Protein chains homodimer
 • A1 (BIOD1_ECOLI):12:18,38,41,42,55,80:82,116,118,119,123,124,176,177,204:207,211,21212:18,38,41,42,55,80:82,116,118,119,123,124,176,177,204:207,211,212
 • A2 (BIOD1_ECOLI):150:154,188150:154,188

Full PDB list

1a82,1bs1,1byi,1dad,1dae,1daf,1dag,1dah,1dai,1dak,1dam,1dbs,1dts (redundant pocketome entry)

Contact map

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ligand
A1 A2
T
1
2
E
1
3
V
1
4
G
1
5
K
1
6
T
1
7
V
1
8
K
3
8
A
4
1
S
4
2
D
5
5
P
8
0
T
8
1
S
8
2
E
1
1
6
A
1
1
8
G
1
1
9
T
1
2
3
P
1
2
4
N
1
7
6
D
1
7
7
I
2
0
4
P
2
0
5
W
2
0
6
L
2
0
7
P
2
1
1
E
2
1
2
L
1
5
0
G
1
5
1
C
1
5
2
I
1
5
3
N
1
5
4
Y
1
8
8
[1]1dak.a adp,dpu,mg,mg 49 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1dae.a ikt 16 . . . . . . . . . . . . . . . . . . . . . . . . . - - . . . . . .
[1]1a82.a atp,dnn,mg 45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1daf.a adp,ca,dsd 44 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1dam.a adp,dtb,mg,mg 44 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1bs1.a adp,daa,mg,mg 49 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1byi.a none . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1dah.a acp,dnn,mn 45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1dag.a acp,dsd 47 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1dad.a adp 27 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1dai.a dsd 16 . . . . . . . . . . . . . . . . . . . . . . . . . - - . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)
[icb] Download ICM binary file
[xml] Download XML file
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