If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

BACR1_HALMA_1_250

Bacteriorhodopsin-I [Archaeal/bacterial/fungal opsin family]

Composition of the binding site

Protein chains monomer
A1 (BACR1_HALMA):93, 101:103, 106, 10793, 101:103, 106, 107

Full PDB list

4jr8, 4l35, 4pxk (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
Y
9
3
A
1
0
1
R
1
0
3
I
1
0
6
Y
1
0
7
[1]4l35.a none . . . . S
[1]4pxk.a lfa10 . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
Y
9
3
A
1
0
1
D
1
0
2
R
1
0
3
I
1
0
6
Y
1
0
7
[1]4l35.a . . . . . S
[1]4pxk.a . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4l35.a is apo
4pxk.a:lfa
[1] 4l35.a
-
0
[1] 4pxk.a -
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4l35.a
4pxk.a
[1] 4l35.a
0
0
[1] 4pxk.a 0
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4l35.a
4pxk.a
[1] 4l35.a
0
0.3
[1] 4pxk.a 0.3
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.1 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4l35.a
4pxk.a
[1] 4l35.a
0
0.9
[1] 4pxk.a 0.9
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...