If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

AVID_CHICK_25_150

Avidin [Avidin/streptavidin family]

Composition of the binding site

Protein chains homotrimer [domain annotation]
A1 (AVID_CHICK):D: Avidin-like (36:40, 57, 59:66, 68, 94, 96:99, 101, 103, 121, 123, 125, 126, 135, 138, 141:143)36:40, 57, 59:66, 68, 94, 96:99, 101, 103, 121, 123, 125, 126, 135, 138, 141:143
A2 (AVID_CHICK):D: Avidin-like (63, 131, 134, 135, 138)63, 131, 134, 135, 138
A4 (AVID_CHICK):D: Avidin-like (111)111

Full PDB list

1avd, 1ave, 1ij8, 1ldo, 1ldq, 1lel, 1nqn, 1rav, 1vyo, 2a5b, 2a5c, 2a8g, 2avi, 2cam, 3fdc, 3vgw, 3vhh, 3vhi, 3vhm, 4i60, 4jhq, 4u46, 5chk, 5hlm, 5iru, 5irw, 5lur, 5myq (redundant Pocketome entry); 2c4i (unprocessed)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 A2
N
3
6
D
3
7
L
3
8
S
4
0
Y
5
7
T
5
9
A
6
0
V
6
1
T
6
2
A
6
3
T
6
4
N
6
6
W
9
4
F
9
6
S
9
7
S
9
9
T
1
0
1
F
1
0
3
W
1
2
1
L
1
2
3
S
1
2
5
K
1
3
5
R
1
3
8
I
1
4
1
N
1
4
2
I
1
4
3
A
6
3
W
1
3
4
K
1
3
5
R
1
3
8
[1]1ldo.a snr15 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]1vyo.a none . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]2avi.b btn16 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3fdc.a btf23 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3vgw.a nvz19 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3vhh.b vhh18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3vhi.a vhi26 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]3vhm.d npk33 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4i60.a b1r26 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4jhq.a b6f41 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5hlm.d b9f26 . . . . . . . . . . . . . . . . . . . . . . . . . . - . . .
[1]5iru.c b9p31 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5irw.a d9p16 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5myq.c hbf26 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]1ij8.a bni25 . . . . . . . . . - - . . . . . . . . . . . . . . . - . . .
[2]1ldq.a shm17 . . . . . . . - - - - - . . . . . . . . . . . . . . - . . .
[2]1lel.b bh724 . . . . . . . - - - - - . . . . . . . . . . . . . . - . . .
[2]1nqn.a none . . . . . . . . - - - . . . . . . . . . . . . . . . - K . .
[2]2a5b.a 8hg20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2a5c.b 8da19 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2a8g.b gng19 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]2cam.b none . . . . . . . A - - - - . . . . . . . . . . . . . . - . . .
[2]4jhq.b b6f,fe42 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]4u46.a none . R M H . A T . - - - - . . . . . . . . . . . Y . . - . . .
[2]5chk.a 55r18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[2]5lur.a str23 . R M H . A T . - - - . . . . . . . . . . . . Y . . - . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 A2 A4
N
3
6
D
3
7
L
3
8
G
3
9
S
4
0
Y
5
7
T
5
9
A
6
0
V
6
1
T
6
2
A
6
3
T
6
4
S
6
5
N
6
6
I
6
8
W
9
4
F
9
6
S
9
7
E
9
8
S
9
9
T
1
0
1
F
1
0
3
W
1
2
1
L
1
2
3
S
1
2
5
S
1
2
6
K
1
3
5
R
1
3
8
I
1
4
1
N
1
4
2
I
1
4
3
A
6
3
G
1
3
1
W
1
3
4
K
1
3
5
R
1
3
8
R
1
1
1
[1]1ldo.a . * * . . . . * * * * * . . . . . . . . . . . . . . . . . * . . . . . . .
[1]1vyo.a . * * . . . * * * * * * . . . . . . . . . . . . . . . . . * . . . . . . .
[1]2avi.b . * * . . . . * * * * * * . . . . . . . . . . . . . . . . * . . . . . . .
[1]3fdc.a . * * . . . . * * * * . - . . . . . . . . . . . . . . . . * . . . . . . .
[1]3vgw.a . * * . . . . * * * * * . . . . . . . . . . . . . . . * . * . . . . . . .
[1]3vhh.b . * * . . . . * * * * * . . . . . . . . . . . . . . . * . * . . . . . . .
[1]3vhi.a . . . . . . * * * * * * . . . . . . . . . . . . . . . * . . . . . . . . .
[1]3vhm.d . . . . . . . * * * * * . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4i60.a . * * . . . * * * * * * . . . . . . . . . . . . . . . . . * . . . . . . -
[1]4jhq.a . * * . . . * * * * * * . . . . . . . . . . . . . . . . . * . . . . . . .
[1]5hlm.d . * * . . . . * * * . . . . . . . . . . . . . . . . . . . * . - . . . . -
[1]5iru.c . * * . . . * * * * * * . . . . . . . . . . . . . . . . . * . . . . . . .
[1]5irw.a . * * . . . * * * * * * . . . . . . . . . . . . . . . . . * . . . . . . .
[1]5myq.c . * * . . . * * * * * * . . . . . . . . . . . . . . . . . * . . . . . . .
[2]1ij8.a . * * . . . . . . . - - - . . . . . . . . . . . . . . . . * . - . . . . .
[2]1ldq.a . * * . . . . . - - - - - - . . . . . . . . . . . . . . . * . - . . . . -
[2]1lel.b . * * . . . . * - - - - - - . . . . . . . . . . . . * . . * . - . . . . .
[2]1nqn.a . * * . . . . . . - - - - . . . . . . . . . . . . . . * . * . - . K * . -
[2]2a5b.a . * * . . . . * . . . . . . . . . . . . . . . . . . . . . * . . . . . . .
[2]2a5c.b . * * . . . . * . . . . . . . . * . . . . . . . . . . . . * . . . . . . .
[2]2a8g.b . * * . . . * . . . . . . . . . . . . . . . . . . . . . . * . . . . . . .
[2]2cam.b . * * . . . . * A - - - - - . . . . . . . . . . . . . . . * . - . . . . -
[2]4jhq.b . * * . . . . . . . . . . . . . . . . . . . . . . . . . . * . . . . . . .
[2]4u46.a . R M N H . A T . - - - - - . . . . . . . . . . . . . . Y * . - . . . . .
[2]5chk.a . * * . . . . * * . . . . . . . . . . . . . . . . . . . . * . . . . . . -
[2]5lur.a . R M N H . A T . - - - - . . . . . . . . . . . . . . . Y * . - . . . . -

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1ldo.a:snr
1vyo.a is apo
2avi.b:btn
3fdc.a:btf
3vgw.a:nvz
3vhh.b:vhh
3vhi.a:vhi
3vhm.d:npk
4i60.a:b1r
4jhq.a:b6f
5hlm.d:b9f
5iru.c:b9p
5irw.a:d9p
5myq.c:hbf
1ij8.a:bni
1ldq.a:shm
1lel.b:bh7
1nqn.a is apo
2a5b.a:8hg
2a5c.b:8da
2a8g.b:gng
2cam.b is apo
4jhq.b:b6f,fe
4u46.a is apo
5chk.a:55r
5lur.a:str
[1] 1ldo.a
0.1
- 0 0.3 0.9 0.8 3.4 4.7 2.0 0.1 3.4 1.1 0.1 3.2 3.7 2.2 4.1 - 2.1 3.9 0.6 - 16 - 1.5 5.1
[1] 1vyo.a 0.3
-
0.1 0.6 1.1 1.0 3.5 5.9 3.5 0.2 4.2 1.8 0.1 3.9 4.6 2.5 4.5 - 3.3 5.4 0.8 - 17 - 1.7 6.1
[1] 2avi.b 0.2 -
0
0.3 0.8 0.9 2.8 5.3 2.7 0.4 3.8 1.8 0.1 3.2 3.8 3.1 3.8 - 2.6 4.6 0.6 - 16 - 1.3 5.2
[1] 3fdc.a 0.2 - 0.1
0.3
1.0 1.2 2.5 3.7 1.1 0.2 1.9 0.2 0.1 1.2 4.3 2.0 1.6 - 2.5 4.4 0.6 - 13 - 0.9 5.0
[1] 3vgw.a 0.1 - 0 0.3
0.1
0.8 2.2 4.9 2.0 0.1 3.1 1.6 0.1 3.1 3.1 2.5 3.8 - 2.2 4.4 0.5 - 15 - 0.8 5.3
[1] 3vhh.b 0.1 - 0 0.4 0.9
0
3.2 5.1 1.9 0.2 3.7 1.6 0.2 3.7 3.4 2.7 3.9 - 1.1 2.3 0.4 - 14 - 1.0 5.1
[1] 3vhi.a 0.1 - 0.1 0.5 0.1 0.6
0
0.6 1.8 0.2 3.1 1.8 0.1 3.1 3.3 2.5 3.8 - 2.1 3.9 0.4 - 16 - 1.2 5.4
[1] 3vhm.d 0.3 - 0.1 0.6 0.1 0.7 0.2
0
2.2 0.3 3.8 2.1 0.1 3.3 3.5 2.7 4.0 - 2.6 3.7 0.4 - 16 - 1.3 5.0
[1] 4i60.a 0.1 - 0 0.4 0.9 1.0 3.3 5.8
0.3
0.3 0.7 0.7 0.1 0.5 2.0 0.4 1.9 - 1.7 3.3 0.8 - 13 - 1.5 5.4
[1] 4jhq.a 0.5 - 0.1 0.6 0.9 1.1 3.3 5.3 3.1
0.4
4.0 1.9 0.1 3.4 4.6 2.5 4.3 - 3.1 5.2 0.9 - 18 - 1.6 5.5
[1] 5hlm.d 0 - 0 0.4 0.5 0.9 2.6 4.9 0.3 0.3
0
0.1 0.2 0.1 1.0 0.6 0.8 - 1.0 2.3 0.3 - 11 - 1.2 4.4
[1] 5iru.c 0 - 0 0.4 1.1 0.8 3.0 5.7 0.5 0.5 1.7
0
0.1 1.1 3.6 1.3 2.7 - 1.9 3.7 0.7 - 14 - 1.2 4.9
[1] 5irw.a 0.1 - 0.1 0.6 0.9 0.9 3.4 5.6 2.9 0.4 4.0 2.3
0.2
3.3 3.5 2.5 3.9 - 2.3 4.2 0.9 - 16 - 1.6 6.1
[1] 5myq.c 0 - 0.1 0.4 0.8 1.0 3.3 5.3 0 0.2 0.1 0.4 0.1
0.1
1.4 0.1 1.0 - 1.2 2.7 0.7 - 12 - 1.4 4.9
[2] 1ij8.a 0 - 0 0.3 0.7 0.6 2.8 5.1 0.3 0.2 0.1 0.1 0.1 0.6
0
0 0.1 - 0.1 0 0.5 - 0.4 - 0.7 0.7
[2] 1ldq.a 0 - 0 0.4 0.6 0.4 2.8 4.7 0.1 0.1 0 0.1 0.1 0.1 0
0
0 - 0.2 0 0.4 - 0 - 0.7 0.4
[2] 1lel.b 0 - 0 0.4 0.8 0.4 2.3 4.0 0.2 0.8 0.1 0 0.1 0.5 0 0
0
- 0.2 0 0.4 - 2.1 - 0.9 0.5
[2] 1nqn.a 0.5 - 0.3 0.4 0.4 0.7 3.4 3.8 1.1 0 0.5 0.3 0.3 1.5 0.2 0.2 0.3
-
0.8 0.4 0.5 - 1.2 - 0.8 0.7
[2] 2a5b.a 0 - 0 0.3 0.8 0.5 3.0 5.3 0.4 0.1 0.1 0.2 0.1 0.6 0 0 0 -
0.1
0 0.6 - 2.1 - 0.8 0.7
[2] 2a5c.b 0 - 0 0.4 0.8 0.9 2.8 5.0 0.6 0.4 0.2 0.2 0.1 0.8 0.4 0 0.3 - 0.2
0
0.8 - 2.0 - 1.5 1.1
[2] 2a8g.b 0 - 0 0.4 0.6 0.4 3.0 5.5 0.4 0.3 0.1 0.1 0.1 0.6 0.1 0 0 - 0.2 0
0.7
- 1.2 - 0.7 0.4
[2] 2cam.b 0.1 - 0 0.3 0.2 0.7 2.1 3.6 0.7 0.1 1.0 0.3 0.1 0.6 1.7 1.1 0.6 - 0.3 0.1 0.6
-
2.0 - 0.6 0.7
[2] 4jhq.b 0 - 0 0.3 0.4 0.4 3.3 5.2 0.3 0.2 0 0 0.1 0.4 0.1 0 0.1 - 0.2 0 0.7 -
0.2
- 0.7 0.5
[2] 4u46.a 1.4 - 1.2 0.9 1.7 1.8 2.8 3.7 1.5 1.4 1.2 1.3 1.2 1.6 1.2 1.2 1.4 - 0.4 0.3 2.4 - 4.0
-
2.4 0.2
[2] 5chk.a 0.1 - 0.1 0.3 0.9 0.9 3.0 4.9 0.5 0.2 0.2 0.1 0.2 0.6 0 0.1 0.2 - 1.5 2.4 0.3 - 6.3 -
0
3.0
[2] 5lur.a 0.3 - 0.3 0.3 0.8 0.9 2.0 2.4 0.6 0.3 0.4 0.4 0.3 0.9 0.5 0.2 0.4 - 0.1 0 1.0 - 1.4 - 1.3
0.1
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (2 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1ldo.a
1vyo.a
2avi.b
3fdc.a
3vgw.a
3vhh.b
3vhi.a
3vhm.d
4i60.a
4jhq.a
5hlm.d
5iru.c
5irw.a
5myq.c
1ij8.a
1ldq.a
1lel.b
1nqn.a
2a5b.a
2a5c.b
2a8g.b
2cam.b
4jhq.b
4u46.a
5chk.a
5lur.a
[1] 1ldo.a
0
.10 .07 .16 .13 .12 .22 .20 .15 .08 .19 .11 .08 .19 .46 .48 .44 .59 .43 .46 .45 .42 .47 .65 .34 .55
[1] 1vyo.a .10
0
.08 .20 .15 .18 .25 .25 .15 .04 .23 .10 .06 .19 .52 .55 .51 .66 .45 .49 .48 .49 .52 .72 .37 .63
[1] 2avi.b .07 .08
0
.20 .13 .15 .23 .21 .14 .08 .20 .09 .05 .18 .47 .51 .47 .63 .42 .45 .45 .45 .49 .68 .34 .59
[1] 3fdc.a .16 .20 .20
0
.16 .22 .27 .28 .19 .18 .19 .15 .20 .19 .43 .45 .41 .53 .42 .44 .43 .36 .44 .59 .28 .50
[1] 3vgw.a .13 .15 .13 .16
0
.14 .18 .21 .14 .14 .17 .11 .12 .18 .48 .47 .45 .54 .41 .44 .45 .42 .46 .65 .30 .56
[1] 3vhh.b .12 .18 .15 .22 .14
0
.22 .23 .24 .16 .24 .19 .15 .25 .44 .46 .45 .52 .44 .47 .44 .38 .45 .61 .36 .52
[1] 3vhi.a .22 .25 .23 .27 .18 .22
0
.05 .27 .23 .32 .24 .22 .31 .60 .60 .55 .59 .56 .58 .59 .50 .61 .60 .45 .54
[1] 3vhm.d .20 .25 .21 .28 .21 .23 .05
0
.28 .22 .32 .24 .19 .32 .60 .60 .53 .61 .55 .56 .58 .49 .61 .60 .46 .54
[1] 4i60.a .15 .15 .14 .19 .14 .24 .27 .28
0
.18 .13 .09 .11 .10 .41 .44 .40 .55 .36 .38 .37 .39 .42 .60 .27 .51
[1] 4jhq.a .08 .04 .08 .18 .14 .16 .23 .22 .18
0
.22 .12 .08 .20 .51 .53 .49 .64 .46 .49 .48 .48 .50 .70 .37 .62
[1] 5hlm.d .19 .23 .20 .19 .17 .24 .32 .32 .13 .22
0
.17 .19 .07 .33 .33 .31 .46 .28 .31 .31 .28 .31 .50 .19 .42
[1] 5iru.c .11 .10 .09 .15 .11 .19 .24 .24 .09 .12 .17
0
.07 .14 .45 .48 .44 .60 .39 .41 .41 .42 .45 .65 .31 .56
[1] 5irw.a .08 .06 .05 .20 .12 .15 .22 .19 .11 .08 .19 .07
0
.16 .47 .50 .45 .62 .41 .43 .43 .45 .48 .67 .33 .58
[1] 5myq.c .19 .19 .18 .19 .18 .25 .31 .32 .10 .20 .07 .14 .16
0
.37 .38 .36 .51 .31 .34 .33 .33 .36 .55 .23 .48
[2] 1ij8.a .46 .52 .47 .43 .48 .44 .60 .60 .41 .51 .33 .45 .47 .37
0
.05 .12 .17 .09 .11 .05 .14 .03 .26 .21 .14
[2] 1ldq.a .48 .55 .51 .45 .47 .46 .60 .60 .44 .53 .33 .48 .50 .38 .05
0
.12 .15 .10 .13 .08 .13 .04 .24 .24 .13
[2] 1lel.b .44 .51 .47 .41 .45 .45 .55 .53 .40 .49 .31 .44 .45 .36 .12 .12
0
.21 .09 .10 .13 .14 .13 .26 .20 .18
[2] 1nqn.a .59 .66 .63 .53 .54 .52 .59 .61 .55 .64 .46 .60 .62 .51 .17 .15 .21
0
.22 .23 .19 .21 .16 .29 .35 .18
[2] 2a5b.a .43 .45 .42 .42 .41 .44 .56 .55 .36 .46 .28 .39 .41 .31 .09 .10 .09 .22
0
.05 .08 .15 .09 .28 .17 .19
[2] 2a5c.b .46 .49 .45 .44 .44 .47 .58 .56 .38 .49 .31 .41 .43 .34 .11 .13 .10 .23 .05
0
.09 .18 .12 .31 .20 .22
[2] 2a8g.b .45 .48 .45 .43 .45 .44 .59 .58 .37 .48 .31 .41 .43 .33 .05 .08 .13 .19 .08 .09
0
.14 .05 .26 .21 .16
[2] 2cam.b .42 .49 .45 .36 .42 .38 .50 .49 .39 .48 .28 .42 .45 .33 .14 .13 .14 .21 .15 .18 .14
0
.14 .24 .18 .19
[2] 4jhq.b .47 .52 .49 .44 .46 .45 .61 .61 .42 .50 .31 .45 .48 .36 .03 .04 .13 .16 .09 .12 .05 .14
0
.24 .23 .14
[2] 4u46.a .65 .72 .68 .59 .65 .61 .60 .60 .60 .70 .50 .65 .67 .55 .26 .24 .26 .29 .28 .31 .26 .24 .24
0
.41 .12
[2] 5chk.a .34 .37 .34 .28 .30 .36 .45 .46 .27 .37 .19 .31 .33 .23 .21 .24 .20 .35 .17 .20 .21 .18 .23 .41
0
.32
[2] 5lur.a .55 .63 .59 .50 .56 .52 .54 .54 .51 .62 .42 .56 .58 .48 .14 .13 .18 .18 .19 .22 .16 .19 .14 .12 .32
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 1.7 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1ldo.a
1vyo.a
2avi.b
3fdc.a
3vgw.a
3vhh.b
3vhi.a
3vhm.d
4i60.a
4jhq.a
5hlm.d
5iru.c
5irw.a
5myq.c
1ij8.a
1ldq.a
1lel.b
1nqn.a
2a5b.a
2a5c.b
2a8g.b
2cam.b
4jhq.b
4u46.a
5chk.a
5lur.a
[1] 1ldo.a
0
0.3 0.4 1.0 1.3 0.8 1.2 0.7 0.7 0.3 0.9 1.2 0.6 0.8 2.5 1.1 1.0 2.8 5.5 4.6 5.6 1.2 5.3 1.8 4.0 2.6
[1] 1vyo.a 0.3
0
0.4 1.0 1.2 0.8 1.2 0.8 0.8 0.3 1.1 1.2 0.6 1.0 2.7 1.1 1.0 2.9 5.7 4.8 5.8 1.2 5.5 1.9 4.2 2.7
[1] 2avi.b 0.4 0.4
0
1.0 1.2 0.8 1.1 0.8 0.8 0.5 1.1 1.1 0.6 1.0 2.6 1.1 1.0 2.9 5.6 4.7 5.7 1.3 5.3 1.8 4.2 2.7
[1] 3fdc.a 1.0 1.0 1.0
0
1.5 1.3 1.5 1.3 1.1 1.1 1.2 1.2 1.1 1.2 2.7 1.3 1.2 3.0 4.8 4.1 5.0 1.4 4.6 1.9 3.7 2.8
[1] 3vgw.a 1.3 1.2 1.2 1.5
0
1.4 0.6 1.4 0.6 1.4 0.8 0.7 1.0 1.4 2.7 1.0 1.6 2.7 5.7 4.6 5.6 1.2 5.2 1.9 3.8 2.5
[1] 3vhh.b 0.8 0.8 0.8 1.3 1.4
0
1.3 0.8 0.9 0.8 1.1 1.5 0.8 1.1 2.5 1.0 1.1 2.8 5.7 4.7 5.7 1.4 5.4 1.7 4.0 2.6
[1] 3vhi.a 1.2 1.2 1.1 1.5 0.6 1.3
0
1.2 0.8 1.3 1.0 0.9 1.0 1.4 2.7 1.1 1.6 2.7 5.8 4.7 5.7 1.3 5.4 1.8 4.0 2.5
[1] 3vhm.d 0.7 0.8 0.8 1.3 1.4 0.8 1.2
0
0.9 0.7 1.1 1.5 0.8 1.1 2.6 1.2 1.1 2.8 5.7 4.8 5.7 1.4 5.5 1.6 4.1 2.6
[1] 4i60.a 0.7 0.8 0.8 1.1 0.6 0.9 0.8 0.9
0
0.8 0.8 0.7 0.7 0.5 2.5 1.1 1.0 2.8 5.5 4.3 5.4 1.3 5.2 1.8 3.7 2.6
[1] 4jhq.a 0.3 0.3 0.5 1.1 1.4 0.8 1.3 0.7 0.8
0
1.1 1.3 0.7 1.0 2.7 1.1 1.0 2.9 5.7 4.7 5.7 1.2 5.4 1.8 4.2 2.7
[1] 5hlm.d 0.9 1.1 1.1 1.2 0.8 1.1 1.0 1.1 0.8 1.1
0
0.8 1.0 0.7 2.3 1.0 0.9 2.5 4.6 3.6 4.6 1.2 4.4 1.7 3.1 2.3
[1] 5iru.c 1.2 1.2 1.1 1.2 0.7 1.5 0.9 1.5 0.7 1.3 0.8
0
1.1 1.3 2.7 1.1 1.6 2.8 5.4 4.3 5.4 1.2 4.9 2.0 3.8 2.6
[1] 5irw.a 0.6 0.6 0.6 1.1 1.0 0.8 1.0 0.8 0.7 0.7 1.0 1.1
0
0.9 2.6 1.1 1.1 2.8 5.7 4.7 5.7 1.2 5.4 1.8 4.0 2.6
[1] 5myq.c 0.8 1.0 1.0 1.2 1.4 1.1 1.4 1.1 0.5 1.0 0.7 1.3 0.9
0
2.4 1.1 0.9 2.9 5.3 4.1 5.2 1.2 5.1 1.8 3.6 2.7
[2] 1ij8.a 2.5 2.7 2.6 2.7 2.7 2.5 2.7 2.6 2.5 2.7 2.3 2.7 2.6 2.4
0
0.3 0.7 1.4 1.3 1.1 1.4 1.2 1.6 1.1 1.8 1.3
[2] 1ldq.a 1.1 1.1 1.1 1.3 1.0 1.0 1.1 1.2 1.1 1.1 1.0 1.1 1.1 1.1 0.3
0
0.8 0.7 0.6 0.6 0.4 0.5 0.4 1.0 1.1 0.7
[2] 1lel.b 1.0 1.0 1.0 1.2 1.6 1.1 1.6 1.1 1.0 1.0 0.9 1.6 1.1 0.9 0.7 0.8
0
0.8 0.5 0.8 0.7 0.4 1.4 1.1 0.9 0.7
[2] 1nqn.a 2.8 2.9 2.9 3.0 2.7 2.8 2.7 2.8 2.8 2.9 2.5 2.8 2.8 2.9 1.4 0.7 0.8
0
0.8 1.3 0.9 1.3 0.7 0.8 1.9 0.7
[2] 2a5b.a 5.5 5.7 5.6 4.8 5.7 5.7 5.8 5.7 5.5 5.7 4.6 5.4 5.7 5.3 1.3 0.6 0.5 0.8
0
2.4 2.4 1.1 1.5 1.1 3.4 0.9
[2] 2a5c.b 4.6 4.8 4.7 4.1 4.6 4.7 4.7 4.8 4.3 4.7 3.6 4.3 4.7 4.1 1.1 0.6 0.8 1.3 2.4
0
2.1 1.1 2.3 1.2 2.5 1.2
[2] 2a8g.b 5.6 5.8 5.7 5.0 5.6 5.7 5.7 5.7 5.4 5.7 4.6 5.4 5.7 5.2 1.4 0.4 0.7 0.9 2.4 2.1
0
1.2 2.7 1.2 2.5 1.1
[2] 2cam.b 1.2 1.2 1.3 1.4 1.2 1.4 1.3 1.4 1.3 1.2 1.2 1.2 1.2 1.2 1.2 0.5 0.4 1.3 1.1 1.1 1.2
0
1.2 1.5 1.1 1.3
[2] 4jhq.b 5.3 5.5 5.3 4.6 5.2 5.4 5.4 5.5 5.2 5.4 4.4 4.9 5.4 5.1 1.6 0.4 1.4 0.7 1.5 2.3 2.7 1.2
0
1.3 3.3 0.7
[2] 4u46.a 1.8 1.9 1.8 1.9 1.9 1.7 1.8 1.6 1.8 1.8 1.7 2.0 1.8 1.8 1.1 1.0 1.1 0.8 1.1 1.2 1.2 1.5 1.3
0
1.6 0.9
[2] 5chk.a 4.0 4.2 4.2 3.7 3.8 4.0 4.0 4.1 3.7 4.2 3.1 3.8 4.0 3.6 1.8 1.1 0.9 1.9 3.4 2.5 2.5 1.1 3.3 1.6
0
1.9
[2] 5lur.a 2.6 2.7 2.7 2.8 2.5 2.6 2.5 2.6 2.6 2.7 2.3 2.6 2.6 2.7 1.3 0.7 0.7 0.7 0.9 1.2 1.1 1.3 0.7 0.9 1.9
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 1.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1ldo.a
1vyo.a
2avi.b
3fdc.a
3vgw.a
3vhh.b
3vhi.a
3vhm.d
4i60.a
4jhq.a
5hlm.d
5iru.c
5irw.a
5myq.c
1ij8.a
1ldq.a
1lel.b
1nqn.a
2a5b.a
2a5c.b
2a8g.b
2cam.b
4jhq.b
4u46.a
5chk.a
5lur.a
[1] 1ldo.a
0
0.5 1.1 1.2 1.6 1.1 1.7 1.1 0.9 0.6 1.3 1.8 1.2 1.0 2.8 1.4 1.6 3.3 5.1 4.3 5.2 1.2 5.2 2.0 4.2 3.1
[1] 1vyo.a 0.5
0
1.1 1.3 1.5 1.1 1.6 1.2 0.9 0.4 1.4 1.8 1.1 1.0 2.9 1.4 1.6 3.4 5.3 4.5 5.4 1.2 5.3 2.1 4.3 3.2
[1] 2avi.b 1.1 1.1
0
1.3 1.6 1.2 1.7 1.3 1.1 1.2 1.4 2.0 1.2 1.4 2.9 1.3 1.4 3.3 5.3 4.5 5.3 1.3 5.4 2.1 4.2 3.2
[1] 3fdc.a 1.2 1.3 1.3
0
1.7 1.6 1.8 1.6 1.2 1.4 1.5 1.8 1.4 1.4 2.8 1.5 1.6 3.4 4.5 3.8 4.6 1.3 4.7 2.1 3.8 3.2
[1] 3vgw.a 1.6 1.5 1.6 1.7
0
1.7 0.9 1.9 0.9 1.7 1.2 1.1 1.2 1.7 3.0 1.4 2.2 3.2 5.4 4.4 5.3 1.2 5.0 2.2 4.0 3.1
[1] 3vhh.b 1.1 1.1 1.2 1.6 1.7
0
1.8 1.2 1.1 1.1 1.5 2.1 1.4 1.3 2.8 1.4 1.6 3.3 5.3 4.5 5.3 1.4 5.4 2.0 4.2 3.2
[1] 3vhi.a 1.7 1.6 1.7 1.8 0.9 1.8
0
1.6 1.1 1.8 1.4 1.3 1.3 1.8 3.0 1.5 2.2 3.2 5.5 4.5 5.3 1.4 5.1 2.1 4.1 3.1
[1] 3vhm.d 1.1 1.2 1.3 1.6 1.9 1.2 1.6
0
1.2 1.1 1.6 2.2 1.4 1.4 2.9 1.6 1.6 3.3 5.3 4.5 5.4 1.5 5.5 1.9 4.3 3.2
[1] 4i60.a 0.9 0.9 1.1 1.2 0.9 1.1 1.1 1.2
0
0.9 1.2 0.9 0.8 0.9 2.7 1.4 1.4 3.3 5.1 4.2 5.1 1.3 4.9 2.0 3.8 3.2
[1] 4jhq.a 0.6 0.4 1.2 1.4 1.7 1.1 1.8 1.1 0.9
0
1.4 1.9 1.3 1.1 2.9 1.4 1.7 3.4 5.3 4.5 5.4 1.2 5.4 2.1 4.3 3.2
[1] 5hlm.d 1.3 1.4 1.4 1.5 1.2 1.5 1.4 1.6 1.2 1.4
0
1.2 1.2 1.2 2.3 1.3 1.3 2.7 4.3 3.4 4.3 1.2 4.1 1.9 3.2 2.5
[1] 5iru.c 1.8 1.8 2.0 1.8 1.1 2.1 1.3 2.2 0.9 1.9 1.2
0
1.4 1.8 3.1 1.4 2.4 3.3 5.3 4.2 5.3 1.3 4.8 2.5 4.0 3.1
[1] 5irw.a 1.2 1.1 1.2 1.4 1.2 1.4 1.3 1.4 0.8 1.3 1.2 1.4
0
1.4 2.7 1.4 1.7 3.3 5.3 4.4 5.2 1.2 5.2 2.1 4.0 3.1
[1] 5myq.c 1.0 1.0 1.4 1.4 1.7 1.3 1.8 1.4 0.9 1.1 1.2 1.8 1.4
0
2.7 1.4 1.6 3.3 5.0 4.1 4.9 1.3 5.1 2.0 3.9 3.1
[2] 1ij8.a 2.8 2.9 2.9 2.8 3.0 2.8 3.0 2.9 2.7 2.9 2.3 3.1 2.7 2.7
0
0.7 1.1 1.8 1.5 1.3 1.9 1.2 2.2 1.2 2.3 1.6
[2] 1ldq.a 1.4 1.4 1.3 1.5 1.4 1.4 1.5 1.6 1.4 1.4 1.3 1.4 1.4 1.4 0.7
0
0.8 1.4 0.8 0.8 0.7 0.8 0.7 1.2 1.7 0.9
[2] 1lel.b 1.6 1.6 1.4 1.6 2.2 1.6 2.2 1.6 1.4 1.7 1.3 2.4 1.7 1.6 1.1 0.8
0
1.4 1.1 1.1 1.1 0.8 2.4 1.4 1.7 1.0
[2] 1nqn.a 3.3 3.4 3.3 3.4 3.2 3.3 3.2 3.3 3.3 3.4 2.7 3.3 3.3 3.3 1.8 1.4 1.4
0
1.4 2.0 1.8 1.6 1.4 1.4 2.5 1.3
[2] 2a5b.a 5.1 5.3 5.3 4.5 5.4 5.3 5.5 5.3 5.1 5.3 4.3 5.3 5.3 5.0 1.5 0.8 1.1 1.4
0
2.5 2.6 1.0 2.3 1.2 3.4 1.0
[2] 2a5c.b 4.3 4.5 4.5 3.8 4.4 4.5 4.5 4.5 4.2 4.5 3.4 4.2 4.4 4.1 1.3 0.8 1.1 2.0 2.5
0
2.2 1.2 2.8 1.5 2.7 1.9
[2] 2a8g.b 5.2 5.4 5.3 4.6 5.3 5.3 5.3 5.4 5.1 5.4 4.3 5.3 5.2 4.9 1.9 0.7 1.1 1.8 2.6 2.2
0
1.3 3.2 1.6 2.7 1.6
[2] 2cam.b 1.2 1.2 1.3 1.3 1.2 1.4 1.4 1.5 1.3 1.2 1.2 1.3 1.2 1.3 1.2 0.8 0.8 1.6 1.0 1.2 1.3
0
1.2 1.5 1.6 1.2
[2] 4jhq.b 5.2 5.3 5.4 4.7 5.0 5.4 5.1 5.5 4.9 5.4 4.1 4.8 5.2 5.1 2.2 0.7 2.4 1.4 2.3 2.8 3.2 1.2
0
2.0 3.3 1.1
[2] 4u46.a 2.0 2.1 2.1 2.1 2.2 2.0 2.1 1.9 2.0 2.1 1.9 2.5 2.1 2.0 1.2 1.2 1.4 1.4 1.2 1.5 1.6 1.5 2.0
0
2.1 1.5
[2] 5chk.a 4.2 4.3 4.2 3.8 4.0 4.2 4.1 4.3 3.8 4.3 3.2 4.0 4.0 3.9 2.3 1.7 1.7 2.5 3.4 2.7 2.7 1.6 3.3 2.1
0
2.5
[2] 5lur.a 3.1 3.2 3.2 3.2 3.1 3.2 3.1 3.2 3.2 3.2 2.5 3.1 3.1 3.1 1.6 0.9 1.0 1.3 1.0 1.9 1.6 1.2 1.1 1.5 2.5
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...