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ATPA_SPIOL_1_507

ATP synthase subunit alpha, chloroplastic [ATPase alpha/beta chains family]

Composition of the binding site

Protein chains monomer
A1 (ATPA_SPIOL):51, 63, 65, 75, 96, 131, 238, 274, 29751, 63, 65, 75, 96, 131, 238, 274, 297

Full PDB list

1fx0, 1kmh

Pocket contact map

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PDB.ch
   
ligand
A1
G
5
1
I
6
3
L
6
5
V
7
5
A
9
6
E
1
3
1
L
2
3
8
M
2
7
4
R
2
9
7
[1]1kmh.a ttx30 . . . . . . . . .
[2]1fx0.a none . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
G
5
1
I
6
3
L
6
5
V
7
5
A
9
6
E
1
3
1
L
2
3
8
M
2
7
4
R
2
9
7
[1]1kmh.a . . . . . . . . .
[2]1fx0.a . . . . . . . * *

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

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pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
1kmh.a:ttx
1fx0.a is apo
[1] 1kmh.a
0.1
-
[2] 1fx0.a 2.7
-
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (2 clusters)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

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pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
1kmh.a
1fx0.a
[1] 1kmh.a
0
.29
[2] 1fx0.a .29
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

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pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1kmh.a
1fx0.a
[1] 1kmh.a
0
0.7
[2] 1fx0.a 0.7
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.3 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
1kmh.a
1fx0.a
[1] 1kmh.a
0
1.1
[2] 1fx0.a 1.1
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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