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ATAD2_HUMAN_980_1108

ATPase family AAA domain-containing protein 2 [AAA ATPase family]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (ATAD2_HUMAN):D: Bromo (1007:1014, 1017:1021, 1024, 1029, 1030, 1056, 1059, 1060, 1062:1068, 1070, 1071)
1073, 1074, 1077
1007:1014, 1017:1021, 1024, 1029, 1030, 1056, 1059, 1060, 1062:1068, 1070, 1071, 1073, 1074, 1077

Full PDB list

3dai, 4qsp, 4qsq, 4qsr, 4qss, 4qst, 4qsu, 4qsv, 4qsw, 4qsx, 4qut, 4quu, 4tt2, 4tt4, 4tt6, 4tte, 4tu4, 4tu6, 4tyl, 4tz2, 4tz8, 5a5n, 5a5o, 5a5p, 5a5q, 5a5r, 5a81, 5a82, 5a83, 5epb, 5f36, 5f3a, 5lj0 (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1
R
1
0
0
7
V
1
0
0
8
F
1
0
0
9
T
1
0
1
0
K
1
0
1
1
P
1
0
1
2
V
1
0
1
3
D
1
0
1
4
E
1
0
1
7
V
1
0
1
8
P
1
0
1
9
D
1
0
2
0
Y
1
0
2
1
M
1
0
2
9
D
1
0
3
0
I
1
0
5
6
N
1
0
5
9
A
1
0
6
0
E
1
0
6
2
Y
1
0
6
3
N
1
0
6
4
P
1
0
6
5
D
1
0
6
6
R
1
0
6
7
D
1
0
6
8
G
1
0
7
0
D
1
0
7
1
L
1
0
7
3
I
1
0
7
4
R
1
0
7
7
[1]4qsp.a aly8 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qsr.a none . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qss.a mb37 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qst.a 12q12 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qsu.a tdr9 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qsv.a thm17 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qsw.a 38t18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qsx.a 38s16 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qut.a GLGalyG32 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4quu.a RGalyGG35 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tt2.a SGRGalyG41 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tt6.a none . . . . . . . . . . . . . . . . . . . A A . . . . . . . . .
[1]4tte.a 36z18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tu4.a 37n26 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tyl.a 39o14 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tz2.a 39r18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tz8.a 39u14 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5n.a 8ws17 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5o.a j5i12 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5p.a jtf18 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5q.a 6xc19 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5r.a np827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a81.a 78j27 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a82.a yej29 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a83.a yd336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5epb.a 5qw,5qw48 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5f36.a 5ue14 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5f3a.a 5u915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5lj0.a 6xx38 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1
R
1
0
0
7
V
1
0
0
8
F
1
0
0
9
T
1
0
1
0
K
1
0
1
1
P
1
0
1
2
V
1
0
1
3
D
1
0
1
4
E
1
0
1
7
V
1
0
1
8
P
1
0
1
9
D
1
0
2
0
Y
1
0
2
1
V
1
0
2
4
M
1
0
2
9
D
1
0
3
0
I
1
0
5
6
N
1
0
5
9
A
1
0
6
0
E
1
0
6
2
Y
1
0
6
3
N
1
0
6
4
P
1
0
6
5
D
1
0
6
6
R
1
0
6
7
D
1
0
6
8
G
1
0
7
0
D
1
0
7
1
L
1
0
7
3
I
1
0
7
4
R
1
0
7
7
[1]4qsp.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qsr.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qss.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qst.a . . . . . . . . * . . . . . . . . . . . . . . . . . . . . . .
[1]4qsu.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qsv.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qsw.a . . . . . . . . . . . * . . . . . . . . . . . . . . . . . . .
[1]4qsx.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4qut.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4quu.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tt2.a . . . . * . . . . . . * . . . . . . . . . . * . . . . . . . .
[1]4tt6.a . . . . . . . . . . . . . . . . . . . . A A . . . . . . . . .
[1]4tte.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tu4.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tyl.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tz2.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]4tz8.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5n.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5o.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5p.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a5q.a . . . . . . . . * . . . . . . . . . . . . . . . . . . . . . .
[1]5a5r.a . . . . . . . . * . . * . . . . . . . . . . . . . . . . . . .
[1]5a81.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5a82.a . . . . . . . . * . . . . . . . . . . . . . . . . . . . . . .
[1]5a83.a . . . . . . . . * . . * . . . . . . . . . . . . . . . . . . .
[1]5epb.a . . . . . . . . . . . * . . . . . . . . . . . . . . . . . * .
[1]5f36.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5f3a.a . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
[1]5lj0.a . . . . . . . . * . . . . . . . . . . . . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
4qsp.a:aly
4qsr.a is apo
4qss.a:mb3
4qst.a:12q
4qsu.a:tdr
4qsv.a:thm
4qsw.a:38t
4qsx.a:38s
4qut.a:GLGalyG
4quu.a:RGalyGG
4tt2.a:SGRGalyG
4tt6.a is apo
4tte.a:36z
4tu4.a:37n
4tyl.a:39o
4tz2.a:39r
4tz8.a:39u
5a5n.a:8ws
5a5o.a:j5i
5a5p.a:jtf
5a5q.a:6xc
5a5r.a:np8
5a81.a:78j
5a82.a:yej
5a83.a:yd3
5epb.a:5qw
5f36.a:5ue
5f3a.a:5u9
5lj0.a:6xx
[1] 4qsp.a
0
- 0 0.1 0.1 0 0 0.1 0.8 0 0.1 - 0.1 0.1 0 0.1 0.1 0 0 0.2 0.1 0.2 0.2 0.2 0.1 0.4 0.1 0.2 0.4
[1] 4qsr.a 0.1
-
0 0 0 0 0.1 0 0.5 0 0.1 - 0 0 0.2 0.1 0 0 0 0.1 0 0.1 0.2 0.3 0.3 0.2 0.1 0.2 0.3
[1] 4qss.a 0 -
0
0.1 0 0.1 0.1 0.1 0.5 0 0.2 - 0.1 0.1 0.1 0.2 0.1 0.2 0 0 0 0.2 0 0.1 0.1 0.7 0.1 0.2 0.2
[1] 4qst.a 0 - 0
0
0 1.0 0.3 0.5 0.9 0 0.1 - 0.1 0.3 0.4 0.2 0.2 0.2 0 0.1 0 0.8 0.1 0.1 0.8 1.5 0.1 0.2 0.9
[1] 4qsu.a 0 - 0 0.1
0
0.1 0.1 0.1 0.4 0 0.1 - 0.1 0 0.1 0 0.1 0.2 0 0 0 0.1 0 0 0.1 0.5 0.1 0.2 0.2
[1] 4qsv.a 0 - 0 0.1 0
0
0 0 0.4 0 0.1 - 0.1 0.1 0.2 0 0 0 0 0 0 0 0 0 0 0.5 0.1 0.2 0.1
[1] 4qsw.a 0 - 0 0.1 0 0.4
0
0 0.9 0.1 0.1 - 0.1 0.4 0.1 0 0 0.5 0 0 0 0.1 0 0.1 0 1.0 0.1 0.2 0.1
[1] 4qsx.a 0 - 0 0.1 0 0 0.1
0
0.1 0 0.1 - 0.1 0 0.2 0 0 0 0 0 0 0 0 0 0 0.4 0.1 0.2 0.1
[1] 4qut.a 0 - 0 0 0.1 0 0.1 0.1
0.1
0 0.1 - 0.1 0 0 0.2 0.1 0 0 0.3 0 0.3 0.1 0.1 0.1 0.3 0.1 0.2 0.4
[1] 4quu.a 0.1 - 0 0.1 0.2 0.1 0.2 0.1 0.4
0
0.2 - 0.1 0.2 0.1 0.1 0.1 0 0.1 0.2 0.2 0.3 0.5 0.7 0.6 0.5 0.1 0.5 0.9
[1] 4tt2.a 0.3 - 0 0 0.1 0.2 0.2 0.2 3.4 1.1
0
- 0.2 1.9 0 0 0.2 1.9 0.1 0.3 0.1 0.3 0.1 0.1 0.2 3.3 0.1 0.2 0.7
[1] 4tt6.a 0 - 0 0 0 0 0 0 0.4 0 0.1
-
0 0 0 0 0.1 0.4 0 0 0 0 0.1 0.2 0.1 0.1 0 0.1 0.3
[1] 4tte.a 0 - 0 0 0.1 0 0.1 0.1 0.4 0 0.1 -
0
0 0 0 0.1 0.1 0 0.2 0 0.1 0 0.1 0.1 0.2 0.1 0.2 0.3
[1] 4tu4.a 0 - 0 0 0.1 0.2 0.2 0.2 0.6 0 0.2 - 0
0
0 0.1 0.2 0.4 0 0.1 0 0.1 0 0.1 0.1 0.2 0.1 0.1 0.3
[1] 4tyl.a 0 - 0 0 0.1 0 0.1 0.1 0.4 0 0.2 - 0.1 0
0
0 0.1 0.1 0 0 0 0.1 0 0 0 0.5 0.1 0.2 0.2
[1] 4tz2.a 0 - 0 0.1 0 0 0 0 0.5 0 0.1 - 0.1 0.1 0.1
0.1
0 0.4 0 0.1 0 0.1 0.1 0.1 0.1 0.7 0.1 0.2 0.3
[1] 4tz8.a 0 - 0 0.1 0 0 0 0 0.6 0 0.1 - 0.1 0 0.1 0
0
0 0 0 0 0 0 0 0 0.5 0.1 0.2 0.1
[1] 5a5n.a 0 - 0 0 0 0 0 0 0.3 0 0.1 - 0.1 0 0 0.2 0.1
0
0 0.1 0 0.1 0 0.1 0.1 0.5 0.1 0.2 0.3
[1] 5a5o.a 0 - 0 0.1 0 0.1 0.1 0 0.7 0 0.1 - 0.1 0.2 0.1 0.1 0 0.1
0
0 0 0.1 0 0.1 0 0.7 0.1 0.3 0.1
[1] 5a5p.a 0 - 0 0.1 0 0 0.1 0 0.5 0 0.1 - 0.1 0.2 0.3 0 0 0 0
0
0.1 0 0.1 0.1 0.1 0.5 0.1 0.2 0.1
[1] 5a5q.a 0 - 0 0.1 0 1.7 0.4 0.8 0.9 0 0.1 - 0.1 0.5 0.7 0.1 0.2 0.3 0 0
0.1
0.4 0 0 0.4 1.4 0.1 0.3 0.5
[1] 5a5r.a 0.3 - 0 0.1 0 0.5 0.1 0 2.1 0.1 0.1 - 0.1 0.4 0.2 0 0.1 1.6 0.1 0 0.1
0.1
0.2 0.5 0.5 0.4 0.1 0.2 0.5
[1] 5a81.a 0 - 0 0.1 0 0.1 0.1 0 0.7 0 0.1 - 0.1 0.2 0.1 0 0 0.2 0 0 0.1 0.1
0.1
0.1 0 0.3 0.1 0.2 0.1
[1] 5a82.a 0.1 - 0 0.1 0 1.6 0.5 0.6 1.4 0 0.1 - 0.1 0.4 0.8 0.1 0 0.4 0 0 0 0.5 0
0
0.5 1.5 0.1 0.2 0.6
[1] 5a83.a 0.1 - 0 0.1 0 0.5 0.1 0 2.0 0 0.1 - 0.1 0.3 0.1 0.1 0.2 1.5 0 0 0 0 0 0
0
1.0 0.1 0.2 0.1
[1] 5epb.a 0.1 - 0 0 0 0 0 0 1.4 0.1 0.2 - 0 0 0.2 0 0.1 0.7 0 0 0 0 0.1 0.6 0.6
0
0.1 0.1 0.7
[1] 5f36.a 0 - 0 0.1 0 0.1 0.1 0.1 0.9 0 0.1 - 0.1 0.1 0.3 0 0.2 0.5 0 0 0 0 0.1 0.4 0.4 0.5
0.1
0.2 0.4
[1] 5f3a.a 0 - 0 0.1 0 0 0.1 0 0.8 0 0.1 - 0.1 0.1 0.2 0 0 0.1 0 0 0 0 0.1 0.4 0.4 0.4 0.1
0.2
0.4
[1] 5lj0.a 0.3 - 0 0.1 0 0.4 0.1 0 1.7 0 0.1 - 0.1 0.4 0.2 0 0 1.4 0 0 0 0 0 0 0 0.7 0.1 0.2
0
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
4qsp.a
4qsr.a
4qss.a
4qst.a
4qsu.a
4qsv.a
4qsw.a
4qsx.a
4qut.a
4quu.a
4tt2.a
4tt6.a
4tte.a
4tu4.a
4tyl.a
4tz2.a
4tz8.a
5a5n.a
5a5o.a
5a5p.a
5a5q.a
5a5r.a
5a81.a
5a82.a
5a83.a
5epb.a
5f36.a
5f3a.a
5lj0.a
[1] 4qsp.a
0
.02 .02 .04 .02 .03 .04 .04 .02 .04 .23 .03 .01 .03 .03 .05 .03 .03 .03 .04 .07 .07 .02 .07 .07 .06 .05 .04 .06
[1] 4qsr.a .02
0
.03 .05 .02 .02 .05 .02 .03 .05 .23 .03 .02 .02 .03 .04 .02 .03 .03 .02 .08 .08 .02 .08 .08 .05 .05 .03 .06
[1] 4qss.a .02 .03
0
.05 .03 .04 .05 .04 .03 .03 .23 .03 .03 .02 .01 .05 .04 .02 .02 .04 .07 .08 .02 .07 .08 .04 .05 .03 .07
[1] 4qst.a .04 .05 .05
0
.05 .06 .05 .06 .06 .07 .19 .05 .05 .04 .05 .07 .05 .05 .05 .06 .04 .04 .04 .04 .04 .07 .06 .06 .03
[1] 4qsu.a .02 .02 .03 .05
0
.04 .05 .02 .02 .05 .24 .02 .01 .03 .02 .03 .03 .02 .03 .02 .07 .08 .02 .07 .08 .06 .05 .04 .07
[1] 4qsv.a .03 .02 .04 .06 .04
0
.05 .02 .04 .04 .23 .05 .04 .04 .05 .04 .01 .04 .03 .03 .09 .09 .03 .09 .09 .06 .05 .04 .07
[1] 4qsw.a .04 .05 .05 .05 .05 .05
0
.06 .06 .07 .19 .06 .05 .04 .06 .07 .05 .06 .06 .06 .07 .06 .04 .07 .05 .05 .06 .07 .05
[1] 4qsx.a .04 .02 .04 .06 .02 .02 .06
0
.02 .05 .25 .03 .02 .04 .03 .03 .02 .03 .03 .01 .09 .10 .03 .09 .10 .07 .05 .03 .08
[1] 4qut.a .02 .03 .03 .06 .02 .04 .06 .02
0
.05 .24 .03 .02 .03 .03 .04 .04 .02 .04 .03 .09 .10 .03 .09 .10 .07 .06 .05 .08
[1] 4quu.a .04 .05 .03 .07 .05 .04 .07 .05 .05
0
.23 .06 .05 .04 .04 .06 .05 .05 .04 .05 .09 .09 .04 .09 .10 .05 .05 .04 .09
[1] 4tt2.a .23 .23 .23 .19 .24 .23 .19 .25 .24 .23
0
.23 .24 .22 .24 .24 .24 .25 .25 .24 .22 .18 .23 .22 .17 .20 .23 .25 .17
[1] 4tt6.a .03 .03 .03 .05 .02 .05 .06 .03 .03 .06 .23
0
.02 .03 .02 .02 .04 .02 .04 .03 .08 .08 .03 .09 .08 .05 .05 .05 .06
[1] 4tte.a .01 .02 .03 .05 .01 .04 .05 .02 .02 .05 .24 .02
0
.03 .02 .03 .03 .01 .03 .02 .07 .08 .03 .08 .08 .06 .05 .04 .07
[1] 4tu4.a .03 .02 .02 .04 .03 .04 .04 .04 .03 .04 .22 .03 .03
0
.02 .05 .03 .03 .03 .04 .06 .07 .02 .07 .07 .04 .04 .04 .05
[1] 4tyl.a .03 .03 .01 .05 .02 .05 .06 .03 .03 .04 .24 .02 .02 .02
0
.04 .04 .01 .02 .03 .07 .08 .03 .07 .08 .05 .05 .03 .08
[1] 4tz2.a .05 .04 .05 .07 .03 .04 .07 .03 .04 .06 .24 .02 .03 .05 .04
0
.03 .04 .03 .02 .10 .09 .04 .10 .09 .07 .05 .04 .08
[1] 4tz8.a .03 .02 .04 .05 .03 .01 .05 .02 .04 .05 .24 .04 .03 .03 .04 .03
0
.03 .02 .02 .08 .09 .03 .08 .09 .07 .05 .03 .08
[1] 5a5n.a .03 .03 .02 .05 .02 .04 .06 .03 .02 .05 .25 .02 .01 .03 .01 .04 .03
0
.03 .03 .06 .08 .03 .08 .08 .06 .05 .04 .08
[1] 5a5o.a .03 .03 .02 .05 .03 .03 .06 .03 .04 .04 .25 .04 .03 .03 .02 .03 .02 .03
0
.02 .07 .08 .02 .06 .08 .06 .04 .02 .08
[1] 5a5p.a .04 .02 .04 .06 .02 .03 .06 .01 .03 .05 .24 .03 .02 .04 .03 .02 .02 .03 .02
0
.09 .09 .03 .09 .09 .06 .04 .03 .08
[1] 5a5q.a .07 .08 .07 .04 .07 .09 .07 .09 .09 .09 .22 .08 .07 .06 .07 .10 .08 .06 .07 .09
0
.04 .08 .03 .05 .09 .07 .08 .05
[1] 5a5r.a .07 .08 .08 .04 .08 .09 .06 .10 .10 .09 .18 .08 .08 .07 .08 .09 .09 .08 .08 .09 .04
0
.08 .04 .01 .05 .06 .08 .03
[1] 5a81.a .02 .02 .02 .04 .02 .03 .04 .03 .03 .04 .23 .03 .03 .02 .03 .04 .03 .03 .02 .03 .08 .08
0
.06 .08 .05 .05 .04 .06
[1] 5a82.a .07 .08 .07 .04 .07 .09 .07 .09 .09 .09 .22 .09 .08 .07 .07 .10 .08 .08 .06 .09 .03 .04 .06
0
.05 .09 .07 .07 .05
[1] 5a83.a .07 .08 .08 .04 .08 .09 .05 .10 .10 .10 .17 .08 .08 .07 .08 .09 .09 .08 .08 .09 .05 .01 .08 .05
0
.06 .07 .08 .02
[1] 5epb.a .06 .05 .04 .07 .06 .06 .05 .07 .07 .05 .20 .05 .06 .04 .05 .07 .07 .06 .06 .06 .09 .05 .05 .09 .06
0
.04 .05 .07
[1] 5f36.a .05 .05 .05 .06 .05 .05 .06 .05 .06 .05 .23 .05 .05 .04 .05 .05 .05 .05 .04 .04 .07 .06 .05 .07 .07 .04
0
.02 .07
[1] 5f3a.a .04 .03 .03 .06 .04 .04 .07 .03 .05 .04 .25 .05 .04 .04 .03 .04 .03 .04 .02 .03 .08 .08 .04 .07 .08 .05 .02
0
.08
[1] 5lj0.a .06 .06 .07 .03 .07 .07 .05 .08 .08 .09 .17 .06 .07 .05 .08 .08 .08 .08 .08 .08 .05 .03 .06 .05 .02 .07 .07 .08
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.9 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4qsp.a
4qsr.a
4qss.a
4qst.a
4qsu.a
4qsv.a
4qsw.a
4qsx.a
4qut.a
4quu.a
4tt2.a
4tt6.a
4tte.a
4tu4.a
4tyl.a
4tz2.a
4tz8.a
5a5n.a
5a5o.a
5a5p.a
5a5q.a
5a5r.a
5a81.a
5a82.a
5a83.a
5epb.a
5f36.a
5f3a.a
5lj0.a
[1] 4qsp.a
0
0.4 0.3 0.3 0.4 0.2 0.3 0.4 0.5 0.5 1.0 0.3 0.2 0.4 0.3 0.5 0.3 0.4 0.3 0.4 0.3 0.5 0.2 0.3 0.5 0.4 0.5 0.3 0.5
[1] 4qsr.a 0.4
0
0.2 0.3 0.3 0.4 0.5 0.3 0.4 0.4 1.2 0.4 0.3 0.3 0.3 0.4 0.3 0.3 0.2 0.2 0.3 0.6 0.4 0.4 0.6 0.5 0.4 0.3 0.6
[1] 4qss.a 0.3 0.2
0
0.2 0.2 0.3 0.5 0.4 0.5 0.4 1.1 0.4 0.2 0.2 0.2 0.4 0.3 0.4 0.2 0.2 0.3 0.5 0.3 0.3 0.5 0.4 0.3 0.3 0.4
[1] 4qst.a 0.3 0.3 0.2
0
0.2 0.3 0.4 0.4 0.5 0.5 1.0 0.4 0.2 0.2 0.2 0.4 0.3 0.4 0.2 0.3 0.2 0.5 0.2 0.2 0.4 0.4 0.3 0.3 0.4
[1] 4qsu.a 0.4 0.3 0.2 0.2
0
0.4 0.4 0.5 0.6 0.6 1.1 0.4 0.3 0.2 0.2 0.3 0.4 0.5 0.2 0.2 0.2 0.4 0.3 0.2 0.4 0.5 0.2 0.2 0.4
[1] 4qsv.a 0.2 0.4 0.3 0.3 0.4
0
0.3 0.3 0.5 0.5 1.0 0.3 0.3 0.4 0.3 0.5 0.3 0.4 0.3 0.3 0.3 0.5 0.2 0.3 0.5 0.4 0.4 0.3 0.5
[1] 4qsw.a 0.3 0.5 0.5 0.4 0.4 0.3
0
0.6 0.7 0.7 0.9 0.3 0.4 0.5 0.5 0.6 0.5 0.6 0.4 0.5 0.3 0.4 0.3 0.3 0.3 0.4 0.5 0.4 0.4
[1] 4qsx.a 0.4 0.3 0.4 0.4 0.5 0.3 0.6
0
0.3 0.3 1.2 0.4 0.4 0.5 0.4 0.5 0.3 0.3 0.3 0.3 0.5 0.7 0.4 0.5 0.7 0.6 0.5 0.4 0.7
[1] 4qut.a 0.5 0.4 0.5 0.5 0.6 0.5 0.7 0.3
0
0.3 1.3 0.6 0.5 0.6 0.4 0.6 0.4 0.2 0.5 0.5 0.6 0.9 0.6 0.6 0.8 0.7 0.7 0.5 0.8
[1] 4quu.a 0.5 0.4 0.4 0.5 0.6 0.5 0.7 0.3 0.3
0
1.2 0.5 0.5 0.5 0.4 0.6 0.4 0.3 0.4 0.4 0.6 0.8 0.6 0.6 0.8 0.6 0.6 0.5 0.8
[1] 4tt2.a 1.0 1.2 1.1 1.0 1.1 1.0 0.9 1.2 1.3 1.2
0
1.0 1.1 1.1 1.1 1.2 1.1 1.2 1.1 1.1 1.0 0.9 1.0 1.0 0.9 1.0 1.1 1.1 1.0
[1] 4tt6.a 0.3 0.4 0.4 0.4 0.4 0.3 0.3 0.4 0.6 0.5 1.0
0
0.3 0.5 0.4 0.5 0.4 0.5 0.3 0.4 0.3 0.5 0.3 0.3 0.5 0.4 0.4 0.3 0.5
[1] 4tte.a 0.2 0.3 0.2 0.2 0.3 0.3 0.4 0.4 0.5 0.5 1.1 0.3
0
0.3 0.2 0.4 0.3 0.4 0.2 0.3 0.2 0.5 0.3 0.2 0.5 0.4 0.4 0.2 0.5
[1] 4tu4.a 0.4 0.3 0.2 0.2 0.2 0.4 0.5 0.5 0.6 0.5 1.1 0.5 0.3
0
0.2 0.4 0.4 0.5 0.3 0.3 0.3 0.5 0.3 0.3 0.4 0.4 0.3 0.3 0.4
[1] 4tyl.a 0.3 0.3 0.2 0.2 0.2 0.3 0.5 0.4 0.4 0.4 1.1 0.4 0.2 0.2
0
0.3 0.2 0.3 0.2 0.3 0.3 0.5 0.3 0.3 0.5 0.4 0.4 0.3 0.5
[1] 4tz2.a 0.5 0.4 0.4 0.4 0.3 0.5 0.6 0.5 0.6 0.6 1.2 0.5 0.4 0.4 0.3
0
0.4 0.5 0.3 0.4 0.4 0.6 0.5 0.4 0.6 0.7 0.5 0.3 0.6
[1] 4tz8.a 0.3 0.3 0.3 0.3 0.4 0.3 0.5 0.3 0.4 0.4 1.1 0.4 0.3 0.4 0.2 0.4
0
0.3 0.2 0.3 0.3 0.6 0.3 0.4 0.6 0.5 0.5 0.3 0.6
[1] 5a5n.a 0.4 0.3 0.4 0.4 0.5 0.4 0.6 0.3 0.2 0.3 1.2 0.5 0.4 0.5 0.3 0.5 0.3
0
0.4 0.4 0.5 0.8 0.5 0.5 0.8 0.7 0.6 0.4 0.8
[1] 5a5o.a 0.3 0.2 0.2 0.2 0.2 0.3 0.4 0.3 0.5 0.4 1.1 0.3 0.2 0.3 0.2 0.3 0.2 0.4
0
0.2 0.2 0.5 0.2 0.2 0.5 0.5 0.3 0.2 0.5
[1] 5a5p.a 0.4 0.2 0.2 0.3 0.2 0.3 0.5 0.3 0.5 0.4 1.1 0.4 0.3 0.3 0.3 0.4 0.3 0.4 0.2
0
0.3 0.6 0.3 0.3 0.6 0.5 0.3 0.2 0.5
[1] 5a5q.a 0.3 0.3 0.3 0.2 0.2 0.3 0.3 0.5 0.6 0.6 1.0 0.3 0.2 0.3 0.3 0.4 0.3 0.5 0.2 0.3
0
0.4 0.2 0.2 0.4 0.4 0.3 0.2 0.4
[1] 5a5r.a 0.5 0.6 0.5 0.5 0.4 0.5 0.4 0.7 0.9 0.8 0.9 0.5 0.5 0.5 0.5 0.6 0.6 0.8 0.5 0.6 0.4
0
0.4 0.3 0.1 0.4 0.5 0.5 0.2
[1] 5a81.a 0.2 0.4 0.3 0.2 0.3 0.2 0.3 0.4 0.6 0.6 1.0 0.3 0.3 0.3 0.3 0.5 0.3 0.5 0.2 0.3 0.2 0.4
0
0.1 0.4 0.3 0.3 0.2 0.4
[1] 5a82.a 0.3 0.4 0.3 0.2 0.2 0.3 0.3 0.5 0.6 0.6 1.0 0.3 0.2 0.3 0.3 0.4 0.4 0.5 0.2 0.3 0.2 0.3 0.1
0
0.3 0.3 0.3 0.3 0.3
[1] 5a83.a 0.5 0.6 0.5 0.4 0.4 0.5 0.3 0.7 0.8 0.8 0.9 0.5 0.5 0.4 0.5 0.6 0.6 0.8 0.5 0.6 0.4 0.1 0.4 0.3
0
0.4 0.5 0.5 0.1
[1] 5epb.a 0.4 0.5 0.4 0.4 0.5 0.4 0.4 0.6 0.7 0.6 1.0 0.4 0.4 0.4 0.4 0.7 0.5 0.7 0.5 0.5 0.4 0.4 0.3 0.3 0.4
0
0.5 0.5 0.5
[1] 5f36.a 0.5 0.4 0.3 0.3 0.2 0.4 0.5 0.5 0.7 0.6 1.1 0.4 0.4 0.3 0.4 0.5 0.5 0.6 0.3 0.3 0.3 0.5 0.3 0.3 0.5 0.5
0
0.3 0.5
[1] 5f3a.a 0.3 0.3 0.3 0.3 0.2 0.3 0.4 0.4 0.5 0.5 1.1 0.3 0.2 0.3 0.3 0.3 0.3 0.4 0.2 0.2 0.2 0.5 0.2 0.3 0.5 0.5 0.3
0
0.5
[1] 5lj0.a 0.5 0.6 0.4 0.4 0.4 0.5 0.4 0.7 0.8 0.8 1.0 0.5 0.5 0.4 0.5 0.6 0.6 0.8 0.5 0.5 0.4 0.2 0.4 0.3 0.1 0.5 0.5 0.5
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.4 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
4qsp.a
4qsr.a
4qss.a
4qst.a
4qsu.a
4qsv.a
4qsw.a
4qsx.a
4qut.a
4quu.a
4tt2.a
4tt6.a
4tte.a
4tu4.a
4tyl.a
4tz2.a
4tz8.a
5a5n.a
5a5o.a
5a5p.a
5a5q.a
5a5r.a
5a81.a
5a82.a
5a83.a
5epb.a
5f36.a
5f3a.a
5lj0.a
[1] 4qsp.a
0
0.8 0.8 0.6 0.6 0.7 0.7 0.7 0.8 0.8 2.3 0.7 0.9 0.9 0.6 1.0 0.9 0.9 0.8 0.8 0.8 0.9 0.8 0.9 0.8 1.0 0.8 0.7 0.8
[1] 4qsr.a 0.8
0
0.7 0.7 0.8 0.9 1.0 0.8 0.9 0.8 2.3 0.9 1.1 1.0 0.7 0.9 0.9 0.9 1.0 0.9 1.0 1.0 1.0 1.1 1.0 1.1 0.8 0.7 1.0
[1] 4qss.a 0.8 0.7
0
0.7 0.8 0.9 0.8 0.8 0.9 0.9 2.2 0.9 1.0 0.9 0.6 0.9 0.9 0.8 0.9 0.8 0.8 0.9 0.9 1.0 0.9 1.1 0.8 0.7 0.9
[1] 4qst.a 0.6 0.7 0.7
0
0.6 0.8 0.8 0.7 1.0 0.8 2.3 0.9 1.1 1.0 0.6 1.1 0.9 1.1 1.0 0.8 0.7 0.9 0.9 0.9 0.9 1.1 0.9 0.8 0.8
[1] 4qsu.a 0.6 0.8 0.8 0.6
0
0.6 0.8 0.6 0.9 0.8 2.3 1.0 1.0 0.9 0.7 1.0 1.0 1.0 0.9 0.7 0.8 0.9 0.9 1.0 0.9 1.0 0.8 0.8 0.8
[1] 4qsv.a 0.7 0.9 0.9 0.8 0.6
0
0.8 0.6 0.9 0.9 2.3 0.8 1.1 1.0 0.7 1.1 0.9 1.0 1.0 0.8 0.9 1.0 0.9 1.1 1.0 1.0 0.9 0.8 0.9
[1] 4qsw.a 0.7 1.0 0.8 0.8 0.8 0.8
0
0.9 1.1 1.0 2.2 0.8 1.0 1.0 0.7 1.1 0.9 1.1 0.9 0.9 0.6 0.7 0.9 0.9 0.7 1.0 0.8 0.7 0.6
[1] 4qsx.a 0.7 0.8 0.8 0.7 0.6 0.6 0.9
0
0.8 0.8 2.4 1.0 1.1 1.0 0.7 1.1 1.0 0.9 1.0 0.7 0.9 1.0 1.0 1.1 1.1 1.0 0.9 0.8 1.0
[1] 4qut.a 0.8 0.9 0.9 1.0 0.9 0.9 1.1 0.8
0
0.7 2.5 1.0 1.2 1.1 0.7 1.2 1.1 0.9 1.1 0.9 1.1 1.3 1.1 1.3 1.3 1.3 1.1 0.9 1.2
[1] 4quu.a 0.8 0.8 0.9 0.8 0.8 0.9 1.0 0.8 0.7
0
2.5 1.0 1.2 1.1 0.7 1.1 1.0 0.9 1.1 0.9 1.0 1.1 1.1 1.2 1.2 1.2 1.0 0.8 1.2
[1] 4tt2.a 2.3 2.3 2.2 2.3 2.3 2.3 2.2 2.4 2.5 2.5
0
2.3 2.2 2.2 2.2 2.3 2.2 2.3 2.3 2.2 2.2 2.1 2.2 2.3 2.1 2.3 2.3 2.2 2.1
[1] 4tt6.a 0.7 0.9 0.9 0.9 1.0 0.8 0.8 1.0 1.0 1.0 2.3
0
0.9 1.0 0.7 1.1 1.0 1.1 1.0 1.0 0.8 0.9 1.0 1.1 1.0 1.0 0.8 0.7 0.9
[1] 4tte.a 0.9 1.1 1.0 1.1 1.0 1.1 1.0 1.1 1.2 1.2 2.2 0.9
0
0.4 0.8 1.0 0.6 0.9 0.5 0.9 1.0 1.0 0.6 0.7 0.9 0.7 0.9 0.8 1.0
[1] 4tu4.a 0.9 1.0 0.9 1.0 0.9 1.0 1.0 1.0 1.1 1.1 2.2 1.0 0.4
0
0.7 0.9 0.7 0.8 0.5 0.8 0.9 0.9 0.6 0.7 0.8 0.7 0.8 0.8 0.9
[1] 4tyl.a 0.6 0.7 0.6 0.6 0.7 0.7 0.7 0.7 0.7 0.7 2.2 0.7 0.8 0.7
0
0.7 0.7 0.6 0.8 0.7 0.5 0.7 0.8 0.8 0.7 0.9 0.6 0.5 0.7
[1] 4tz2.a 1.0 0.9 0.9 1.1 1.0 1.1 1.1 1.1 1.2 1.1 2.3 1.1 1.0 0.9 0.7
0
0.7 0.7 0.8 1.0 1.1 1.1 0.9 1.0 1.0 1.0 0.9 0.6 1.1
[1] 4tz8.a 0.9 0.9 0.9 0.9 1.0 0.9 0.9 1.0 1.1 1.0 2.2 1.0 0.6 0.7 0.7 0.7
0
0.6 0.5 0.8 0.9 1.0 0.6 0.6 0.9 0.8 0.8 0.7 1.0
[1] 5a5n.a 0.9 0.9 0.8 1.1 1.0 1.0 1.1 0.9 0.9 0.9 2.3 1.1 0.9 0.8 0.6 0.7 0.6
0
0.7 0.9 1.1 1.2 0.8 1.0 1.0 1.1 0.9 0.7 1.2
[1] 5a5o.a 0.8 1.0 0.9 1.0 0.9 1.0 0.9 1.0 1.1 1.1 2.3 1.0 0.5 0.5 0.8 0.8 0.5 0.7
0
0.8 1.0 1.0 0.5 0.6 0.8 0.8 0.8 0.7 0.9
[1] 5a5p.a 0.8 0.9 0.8 0.8 0.7 0.8 0.9 0.7 0.9 0.9 2.2 1.0 0.9 0.8 0.7 1.0 0.8 0.9 0.8
0
0.8 0.9 0.8 0.9 0.9 0.9 0.8 0.7 0.9
[1] 5a5q.a 0.8 1.0 0.8 0.7 0.8 0.9 0.6 0.9 1.1 1.0 2.2 0.8 1.0 0.9 0.5 1.1 0.9 1.1 1.0 0.8
0
0.6 0.9 0.8 0.7 1.0 0.9 0.7 0.6
[1] 5a5r.a 0.9 1.0 0.9 0.9 0.9 1.0 0.7 1.0 1.3 1.1 2.1 0.9 1.0 0.9 0.7 1.1 1.0 1.2 1.0 0.9 0.6
0
0.9 0.9 0.6 0.9 0.8 0.7 0.5
[1] 5a81.a 0.8 1.0 0.9 0.9 0.9 0.9 0.9 1.0 1.1 1.1 2.2 1.0 0.6 0.6 0.8 0.9 0.6 0.8 0.5 0.8 0.9 0.9
0
0.5 0.8 0.7 0.8 0.8 0.9
[1] 5a82.a 0.9 1.1 1.0 0.9 1.0 1.1 0.9 1.1 1.3 1.2 2.3 1.1 0.7 0.7 0.8 1.0 0.6 1.0 0.6 0.9 0.8 0.9 0.5
0
0.7 0.8 1.0 0.8 0.8
[1] 5a83.a 0.8 1.0 0.9 0.9 0.9 1.0 0.7 1.1 1.3 1.2 2.1 1.0 0.9 0.8 0.7 1.0 0.9 1.0 0.8 0.9 0.7 0.6 0.8 0.7
0
0.9 0.9 0.7 0.5
[1] 5epb.a 1.0 1.1 1.1 1.1 1.0 1.0 1.0 1.0 1.3 1.2 2.3 1.0 0.7 0.7 0.9 1.0 0.8 1.1 0.8 0.9 1.0 0.9 0.7 0.8 0.9
0
0.9 0.9 1.0
[1] 5f36.a 0.8 0.8 0.8 0.9 0.8 0.9 0.8 0.9 1.1 1.0 2.3 0.8 0.9 0.8 0.6 0.9 0.8 0.9 0.8 0.8 0.9 0.8 0.8 1.0 0.9 0.9
0
0.4 0.9
[1] 5f3a.a 0.7 0.7 0.7 0.8 0.8 0.8 0.7 0.8 0.9 0.8 2.2 0.7 0.8 0.8 0.5 0.6 0.7 0.7 0.7 0.7 0.7 0.7 0.8 0.8 0.7 0.9 0.4
0
0.8
[1] 5lj0.a 0.8 1.0 0.9 0.8 0.8 0.9 0.6 1.0 1.2 1.2 2.1 0.9 1.0 0.9 0.7 1.1 1.0 1.2 0.9 0.9 0.6 0.5 0.9 0.8 0.5 1.0 0.9 0.8
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

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