If you see this message after the page is completely loaded, then JavaScript is not supported or disabled in your browser. Please consider enabling JavaScript for this site.

AROE_LISMO_1_291

Shikimate dehydrogenase (NADP(+)) [Shikimate dehydrogenase family]

Composition of the binding site

Protein chains monomer [domain annotation]
A1 (AROE_LISMO):R: Shikimate binding (26, 28)
18, 23, 71, 73, 77, 98, 113, 265, 268
18, 23, 26, 28, 71, 73, 77, 98, 113, 265, 268
Cofactors (cF):nad

Full PDB list

3tnl, 3toz (redundant Pocketome entry)

Pocket contact map

[download in TSV format]
   
PDB.ch
   
ligand
A1 cF
L
1
8
I
2
3
S
2
6
S
2
8
N
7
1
S
7
3
K
7
7
N
9
8
D
1
1
3
M
2
6
5
Q
2
6
8
[1]3tnl.b none . . . . . . . . . . . nad
[1]3tnl.c skm12 . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Site contact map

[download in TSV format]
   
PDB.ch
A1 cF
L
1
8
I
2
3
S
2
6
S
2
8
N
7
1
S
7
3
K
7
7
N
9
8
D
1
1
3
M
2
6
5
Q
2
6
8
[1]3tnl.b . . . . . . . . . . . nad
[1]3tnl.c . . . . . . . . . . .

Legend

B backbone contact  S side chain contact  F BB + SCh
.
 no contact C covalent bond
X X X X X  clash
X mutation to X * complex cases - deletion
M contact with cofactors/metals (if any)

Pocket-ligand steric compatibility

Ligands (x) vs pockets (y) colored by number of steric clashes

zoom: [−] [+]; [view as image]; [download as text]

pocketligand
≥10
9
8
7
6
5
4
3
2
1
0
3tnl.b is apo
3tnl.c:skm
[1] 3tnl.b
-
0.2
[1] 3tnl.c -
0.1
[Pocket-ligand steric clashes matrix]

Pocket clash dissimilarity (1 cluster)

Pockets (x) vs pockets (y) colored by ligand clash profile difference

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥1.
.9
.8
.7
.6
.5
.4
.3
.2
.1
.0
3tnl.b
3tnl.c
[1] 3tnl.b
0
.01
[1] 3tnl.c .01
0
[Pocket clash dissimilarity matrix]

Site backbone RMSD (median 0.5 Å)

Pockets (x) vs pockets (y) colored by RMSD of site residue backbone atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3tnl.b
3tnl.c
[1] 3tnl.b
0
0.4
[1] 3tnl.c 0.4
0
[Binding site backbone RMSD matrix]

Site full-atom RMSD (median 0.2 Å)

Pockets (x) vs pockets (y) colored by RMSD of all site residue atoms

zoom: [−] [+]; [view as image]; [download as text]

pocketpocket
≥10 Å
9 Å
8 Å
7 Å
6 Å
5 Å
4 Å
3 Å
2 Å
1 Å
0 Å
3tnl.b
3tnl.c
[1] 3tnl.b
0
1.1
[1] 3tnl.c 1.1
0
[Binding site full-atom RMSD matrix]







[show 3D visualization]

[ENTRY 2D visualization]

L C X E | Background Color: | Anaglyph Stereo:

loading...